Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 1.5e-130 469.5 243 100.0
MD13G1190800 Malus domestica HOM05D002407 ORTHO05D002476 1.1e-56 224.2 136 88.2
MD16G1191200 Malus domestica HOM05D002407 ORTHO05D002476 3.3e-45 186.0 145 74.5
Prupe.1G011200 Prunus persica HOM05D002407 ORTHO05D002476 2.8e-36 156.4 137 63.5
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 1.0e-30 137.9 83 88.0
Manes.15G026500 Manihot esculenta HOM05D002407 ORTHO05D002476 8.3e-28 128.3 142 56.3
GSVIVG01017938001 Vitis vinifera HOM05D002407 ORTHO05D002476 1.8e-27 127.1 137 58.4
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 5.9e-26 122.1 83 79.5
Manes.15G027400 Manihot esculenta HOM05D002407 ORTHO05D002476 2.9e-25 119.8 143 54.5
RcHm_v2.0_Chr4g0416621 Rosa chinensis HOM05D002407 ORTHO05D002476 6.6e-25 118.6 140 52.9
Haze_00920 Corylus avellana HOM05D002407 ORTHO05D002476 1.5e-24 117.5 132 56.1
MELO3C014484.2 Cucumis melo HOM05D002407 ORTHO05D002476 1.9e-24 117.1 186 44.6
ClCG06G006080 Citrullus lanatus HOM05D002407 ORTHO05D002476 2.5e-24 116.7 186 44.6
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 4.2e-24 115.9 120 60.8
Sabra08G0115000 Salix brachista HOM05D002407 ORTHO05D002476 7.2e-24 115.2 137 54.0
Cpa.g.sc58.130 Carica papaya HOM05D002407 ORTHO05D002476 2.8e-23 113.2 141 55.3
CiPaw.02G096000 Carya illinoinensis HOM05D002407 ORTHO05D002476 3.6e-23 112.8 137 51.1
FvH4_4g15230 Fragaria vesca HOM05D002407 ORTHO05D002476 8.0e-23 111.7 141 51.1
FAN12G3852 Fragaria x ananassa HOM05D002407 ORTHO05D002476 8.0e-23 111.7 141 51.1
CsaV3_6G038190 Cucumis sativus L. HOM05D002407 ORTHO05D002476 1.0e-22 111.3 186 43.5
FAN17G1063 Fragaria x ananassa HOM05D002407 ORTHO05D002476 1.0e-22 111.3 142 51.4
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 2.3e-22 110.2 116 57.8
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.3e-22 110.2 116 57.8
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.3e-22 110.2 116 57.8
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.0e-22 109.4 83 69.9
TAR365G0729 Trochodendron aralioides HOM05D002407 ORTHO05D002476 4.0e-22 109.4 138 52.2
Thecc.04G228600 Theobroma cacao HOM05D002407 ORTHO05D002476 1.2e-21 107.8 156 51.9
FAN07G2387 Fragaria x ananassa HOM05D002407 ORTHO05D002476 2.6e-21 106.7 142 50.0
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.4e-21 106.3 116 56.0
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 5.7e-21 105.5 84 67.9
FAN22G1385 Fragaria x ananassa HOM05D002407 ORTHO05D002476 9.8e-21 104.8 142 50.7
CiPaw.01G164400 Carya illinoinensis HOM05D002407 ORTHO05D002476 1.3e-20 104.4 153 43.8
Dinv38434 Davidia involucrata HOM05D002407 ORTHO05D002476 2.2e-20 103.6 135 48.9
Eucgr.H03537 Eucalyptus grandis HOM05D002407 ORTHO05D002476 2.2e-20 103.6 211 38.9
Potri.010G089700 Populus trichocarpa HOM05D002407 ORTHO05D002476 7.0e-19 98.6 140 48.6
Sabra10G0053600 Salix brachista HOM05D002407 ORTHO05D002476 7.0e-19 98.6 144 47.9
Ciclev10004136m.g Citrus clementina HOM05D002407 ORTHO05D002476 9.2e-19 98.2 133 54.1
QL06p003139 Quercus lobata HOM05D002407 ORTHO05D002476 1.6e-18 97.4 145 46.2
Dinv44512 Davidia involucrata HOM05D002407 ORTHO05D002476 2.0e-18 97.1 179 43.0
Duzib151G0448 Durio zibethinus HOM05D002407 ORTHO05D002476 2.7e-18 96.7 154 49.4
TWI09G0219 Tripterygium wilfordii HOM05D002407 ORTHO05D002476 7.8e-18 95.1 141 48.2
PGR004G2462 Punica granatum HOM05D002407 ORTHO05D002476 6.6e-17 92.0 140 47.9
Duzib052G1002 Durio zibethinus HOM05D002407 ORTHO05D002476 1.1e-16 91.3 155 47.7
Phvul.007G055400 Phaseolus vulgaris HOM05D002407 ORTHO05D002476 3.3e-16 89.7 141 46.1
Sed0021914 Sechium edule HOM05D002407 ORTHO05D002476 7.3e-16 88.6 200 36.0
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 7.3e-16 88.6 83 59.0
Potri.008G151200 Populus trichocarpa HOM05D002407 ORTHO05D002476 1.2e-15 87.8 140 47.1
TAR362G1005 Trochodendron aralioides HOM05D002407 ORTHO05D002476 1.2e-15 87.8 141 44.7
Nn1g02265 Nelumbo nucifera HOM05D002407 ORTHO05D002476 1.6e-15 87.4 154 43.5
TWI53G2093 Tripterygium wilfordii HOM05D002407 ORTHO05D002476 1.6e-15 87.4 143 44.1
Hma1.2p1_3606F.1_g337000 Hydrangea macrophylla HOM05D002407 ORTHO05D002476 6.1e-15 85.5 136 45.6
Gohir.A09G214700 Gossypium hirsutum HOM05D002407 ORTHO05D002476 8.0e-15 85.1 157 45.2
Gohir.D09G217200 Gossypium hirsutum HOM05D002407 ORTHO05D002476 8.0e-15 85.1 158 45.6
Gorai.006G237700 Gossypium raimondii HOM05D002407 ORTHO05D002476 8.0e-15 85.1 158 45.6
Gorai.011G169000 Gossypium raimondii HOM05D002407 ORTHO05D002476 8.0e-15 85.1 151 48.3
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.0e-14 84.7 145 42.1
Duzib212G0865 Durio zibethinus HOM05D002407 ORTHO05D002476 1.4e-14 84.3 144 48.6
TWI73G0052 Tripterygium wilfordii HOM05D002407 ORTHO05D002476 1.8e-14 84.0 150 40.7
Glyma.20G144400 Glycine max HOM05D002407 ORTHO05D002476 3.1e-14 83.2 140 44.3
VMungo0720G1158 Vigna mungo HOM05D002407 ORTHO05D002476 5.2e-14 82.4 140 45.7
TAR636G3152 Trochodendron aralioides HOM05D002407 ORTHO05D002476 1.2e-13 81.3 127 46.5
Psat6g208200 Pisum sativum HOM05D002407 ORTHO05D002476 2.0e-13 80.5 138 43.5
Lalb_Chr09g0319791 Lupinus albus HOM05D002407 ORTHO05D002476 2.6e-13 80.1 144 45.1
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 2.6e-13 80.1 83 55.4
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 2.6e-13 80.1 95 50.5
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 2.6e-13 80.1 95 50.5
Lalb_Chr05g0210931 Lupinus albus HOM05D002407 ORTHO05D002476 1.3e-12 77.8 177 36.2
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 1.7e-12 77.4 95 46.3
Glyma.10G249300 Glycine max HOM05D002407 ORTHO05D002476 1.7e-12 77.4 143 42.7
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 2.2e-12 77.0 83 49.4
Lj5g0016334 Lotus japonicus HOM05D002407 ORTHO05D002476 2.9e-12 76.6 156 39.7
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 4.9e-12 75.9 92 50.0
TAR633G0416 Trochodendron aralioides HOM05D002407 ORTHO05D002476 1.4e-11 74.3 148 38.5
Ca_10916_v3 Cicer arietinum L. HOM05D002407 ORTHO05D002476 2.4e-11 73.6 138 39.9
arahy.Tifrunner.gnm1.ann1.C339P9 Arachis hypogaea HOM05D002407 ORTHO05D002476 3.2e-11 73.2 151 38.4
arahy.Tifrunner.gnm1.ann1.GGU5D9 Arachis hypogaea HOM05D002407 ORTHO05D002476 3.2e-11 73.2 151 38.4
TPR.G5532 Trifolium pratense HOM05D002407 ORTHO05D002476 4.1e-11 72.8 141 38.3
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 5.4e-11 72.4 92 51.1
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 9.2e-11 71.6 148 41.2
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 9.2e-11 71.6 148 41.2
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 9.2e-11 71.6 83 50.6
Medtr1g104710 Medicago truncatula HOM05D002407 ORTHO05D002476 1.6e-10 70.9 148 37.8
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 2.0e-10 70.5 100 45.0
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 2.7e-10 70.1 92 47.8
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 3.5e-10 69.7 146 39.0
Gohir.A10G117100 Gossypium hirsutum HOM05D002407 ORTHO05D002476 3.5e-10 69.7 150 44.7
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 3.5e-10 69.7 146 39.0
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 6.0e-10 68.9 97 49.5
COL.COLO4_10231 Corchorus olitorius HOM05D002407 ORTHO05D002476 7.8e-10 68.6 240 34.6
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 7.8e-10 68.6 84 51.2
Actinidia23483 Actinidia chinensis HOM05D002407 ORTHO05D002476 1.3e-09 67.8 205 34.1
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.3e-09 67.8 64 57.8
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 1.3e-09 67.8 106 45.3
MBI04_g44890_MAGBIO Magnolia biondii HOM05D002407 ORTHO05D002476 2.3e-09 67.0 139 35.3
Actinidia08503 Actinidia chinensis HOM05D002407 ORTHO05D002476 3.0e-09 66.6 135 42.2
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 3.0e-09 66.6 86 50.0
Sopen09g030650 Solanum pennellii HOM05D002407 ORTHO05D002476 3.9e-09 66.2 136 45.6
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 5.0e-09 65.9 148 41.9
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 5.0e-09 65.9 86 50.0
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 5.0e-09 65.9 86 50.0
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 5.0e-09 65.9 136 39.0
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 6.6e-09 65.5 133 41.4
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.1e-08 64.7 86 51.2
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 1.5e-08 64.3 94 48.9
Cc03_g03560 Coffea canephora HOM05D002407 ORTHO05D002476 1.9e-08 63.9 223 35.4
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 2.5e-08 63.5 103 44.7
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 2.5e-08 63.5 88 47.7
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 2.5e-08 63.5 93 43.0
Nn4g26275 Nelumbo nucifera HOM05D002407 ORTHO05D002476 4.3e-08 62.8 204 33.8
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 4.3e-08 62.8 96 49.0
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 7.3e-08 62.0 64 56.2
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 7.3e-08 62.0 89 46.1
Solyc09g075830.3 Solanum lycopersicum HOM05D002407 ORTHO05D002476 7.3e-08 62.0 136 43.4
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 9.5e-08 61.6 149 39.6
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.2e-07 61.2 97 45.4
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.6e-07 60.8 88 45.5
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 1.6e-07 60.8 85 47.1
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 2.8e-07 60.1 95 44.2
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 3.6e-07 59.7 94 46.8
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 3.6e-07 59.7 84 50.0
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 3.6e-07 59.7 87 49.4
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 4.7e-07 59.3 81 48.1
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 4.7e-07 59.3 88 44.3
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 4.7e-07 59.3 84 48.8
Aqoxy2G03363 Aquilegia oxysepala HOM05D002407 ORTHO05D002476 6.2e-07 58.9 122 39.3
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 6.2e-07 58.9 139 39.6
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 6.2e-07 58.9 134 38.1
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 8.0e-07 58.5 157 35.0
Actinidia36978 Actinidia chinensis HOM05D002407 ORTHO05D002476 8.0e-07 58.5 138 38.4
Peaxi162Scf00437g00026 Petunia axillaris HOM05D002407 ORTHO05D002476 8.0e-07 58.5 125 38.4
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 1.4e-06 57.8 94 45.7
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 2.3e-06 57.0 89 47.2
Gohir.D10G151700 Gossypium hirsutum HOM05D002407 ORTHO05D002476 2.3e-06 57.0 191 36.1
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 3.1e-06 56.6 84 45.2
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 3.1e-06 56.6 85 45.9
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 5.2e-06 55.8 93 44.1
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 5.2e-06 55.8 122 36.1
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 5.2e-06 55.8 122 36.1
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 6.8e-06 55.5 141 36.9
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 8.9e-06 55.1 94 44.7
THA.LOC104822274 Tarenaya hassleriana HOM05D002407 ORTHO05D002476 8.9e-06 55.1 126 39.7


User provided reference genes

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