Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 7.2e-187 657.1 344 100.0
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 1.9e-158 562.8 352 87.5
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 3.9e-148 528.5 343 84.3
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 1.9e-126 456.4 338 74.6
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 1.0e-124 450.7 337 74.5
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.1e-122 443.0 337 73.6
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.2e-120 437.2 337 72.4
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 9.3e-118 427.6 322 72.7
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 2.1e-117 426.4 342 69.9
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 2.1e-117 426.4 337 69.4
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 2.1e-117 426.4 311 73.0
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 6.1e-117 424.9 376 65.2
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 1.3e-116 423.7 262 82.8
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 2.3e-116 422.9 290 76.9
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 3.0e-116 422.5 262 82.8
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 1.9e-115 419.9 339 68.7
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 1.9e-115 419.9 316 69.9
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 3.3e-115 419.1 330 68.5
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.2e-114 416.4 260 81.9
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 6.3e-114 414.8 341 65.4
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 6.3e-114 414.8 272 76.5
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 8.2e-114 414.5 338 68.0
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 1.1e-113 414.1 275 78.9
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 1.4e-113 413.7 252 81.0
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 1.8e-113 413.3 344 66.6
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 4.1e-113 412.1 256 82.0
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 9.0e-113 411.0 262 77.9
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 2.0e-112 409.8 318 67.6
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 2.0e-112 409.8 258 81.0
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 2.0e-112 409.8 314 71.0
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 3.4e-112 409.1 308 72.1
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 4.5e-112 408.7 308 69.8
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 2.2e-111 406.4 251 79.7
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 2.9e-111 406.0 344 63.4
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.4e-110 403.7 255 78.4
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.4e-110 403.7 255 78.4
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 1.4e-110 403.7 251 78.5
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 1.4e-110 403.7 353 65.2
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 2.5e-110 402.9 325 66.8
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 2.5e-110 402.9 333 64.6
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 2.5e-110 402.9 253 78.7
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 4.2e-110 402.1 350 63.1
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 5.5e-110 401.7 342 64.0
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 5.5e-110 401.7 346 63.9
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 1.2e-109 400.6 310 67.1
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 2.1e-109 399.8 255 78.4
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 2.1e-109 399.8 256 78.9
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 2.7e-109 399.4 310 68.7
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 2.7e-109 399.4 301 69.8
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 2.7e-109 399.4 340 64.7
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 2.7e-109 399.4 249 79.1
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 4.6e-109 398.7 248 79.0
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 1.4e-108 397.1 254 78.0
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 3.9e-108 395.6 249 77.9
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 1.5e-107 393.7 263 76.4
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 1.5e-107 393.7 261 75.9
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 3.3e-107 392.5 314 65.0
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 3.3e-107 392.5 252 76.2
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 5.7e-107 391.7 274 71.5
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 5.7e-107 391.7 283 71.4
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 1.3e-106 390.6 279 70.6
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 3.7e-106 389.0 245 77.1
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 1.8e-105 386.7 291 68.7
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 2.0e-104 383.3 299 66.9
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 2.6e-104 382.9 302 67.2
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 4.5e-104 382.1 327 63.3
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 4.5e-104 382.1 256 74.2
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.0e-103 380.9 294 68.4
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 2.2e-103 379.8 324 64.2
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 6.5e-103 378.3 324 63.0
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 4.2e-102 375.6 255 71.8
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 7.2e-102 374.8 260 71.5
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 7.2e-102 374.8 321 62.9
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 1.2e-101 374.0 302 64.9
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 3.6e-101 372.5 296 65.2
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 4.7e-101 372.1 347 62.2
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 4.7e-101 372.1 251 72.9
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 1.0e-100 370.9 288 68.4
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 1.8e-100 370.2 251 73.7
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 1.8e-100 370.2 325 63.4
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 3.0e-100 369.4 293 66.2
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 3.9e-100 369.0 288 66.7
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 3.9e-100 369.0 293 66.6
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 3.9e-100 369.0 344 58.7
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 1.1e-99 367.5 329 60.5
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 1.5e-99 367.1 250 74.0
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 1.5e-99 367.1 250 73.2
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 1.5e-99 367.1 250 73.2
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 5.7e-99 365.2 325 60.3
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 7.4e-99 364.8 330 61.2
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 8.2e-98 361.3 322 61.2
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 2.4e-97 359.8 303 63.4
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 1.5e-91 340.5 250 68.4
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 7.5e-91 338.2 250 67.6
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 3.7e-90 335.9 250 67.2
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 3.1e-89 332.8 244 67.6
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 3.1e-89 332.8 331 56.2
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 7.0e-89 331.6 265 67.5
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 9.4e-86 321.2 218 74.8
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 8.5e-79 298.1 200 72.5
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 3.6e-77 292.7 293 56.7
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 4.7e-77 292.4 302 53.6
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 2.0e-75 287.0 195 76.9
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.1e-70 271.2 265 50.9
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 4.3e-70 269.2 274 51.5
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 9.5e-70 268.1 277 48.7
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 4.0e-68 262.7 204 71.1
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.1e-62 244.6 226 63.7
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 2.2e-58 230.3 238 50.4
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.9e-57 227.3 139 78.4
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 2.8e-53 213.4 208 51.9
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 3.9e-47 193.0 181 63.5
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 5.1e-47 192.6 180 58.3
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 5.1e-47 192.6 207 53.1
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.5e-46 191.0 125 75.2
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 2.2e-42 177.2 163 60.7
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 9.2e-41 171.8 114 76.3
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 6.6e-39 165.6 120 69.2
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 8.6e-39 165.2 184 52.2
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 2.5e-38 163.7 114 72.8
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 3.2e-33 146.7 104 66.3
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.6e-32 144.4 98 73.5
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 3.9e-31 139.8 109 64.2
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 4.3e-30 136.3 120 58.3
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 5.6e-30 136.0 80 82.5
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 1.3e-29 134.8 168 54.2
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.1e-29 134.0 75 86.7
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 3.4e-27 126.7 101 67.3
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 6.0e-24 115.9 259 31.7
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 7.9e-24 115.5 116 56.0
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 1.5e-22 111.3 82 65.9
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 2.1e-21 107.5 83 65.1
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 3.4e-19 100.1 153 41.8
Cre09.g402950 Chlamydomonas reinhardtii HOM05D005205 ORTHO05D006155 8.4e-18 95.5 228 29.8
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 1.4e-17 94.7 56 82.1
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 3.2e-17 93.6 99 58.6
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 7.1e-17 92.4 50 86.0
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.1e-16 90.9 56 78.6
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.0e-15 88.6 147 36.1
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.5e-14 84.7 183 29.5
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 1.2e-11 75.1 62 61.3
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.0e-11 74.3 296 27.4
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 1.3e-10 71.6 48 62.5
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 7.1e-09 65.9 80 50.0
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 9.3e-09 65.5 74 40.5


User provided reference genes

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