Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 1.0e-35 152.9 81 100.0
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 1.6e-28 129.0 79 87.3
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 2.0e-23 112.1 78 78.2
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 2.6e-18 95.1 78 66.7
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 2.6e-18 95.1 78 66.7
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 3.4e-18 94.7 78 65.4
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 3.4e-18 94.7 78 65.4
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 1.3e-17 92.8 78 67.9
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 3.7e-17 91.3 79 67.1
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 3.7e-17 91.3 79 67.1
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 3.7e-17 91.3 79 67.1
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 1.1e-16 89.7 60 68.3
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 1.4e-16 89.4 78 62.8
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 1.9e-16 89.0 78 60.3
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 4.1e-16 87.8 79 65.8
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 1.2e-15 86.3 61 65.6
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 2.7e-15 85.1 78 60.3
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 3.5e-15 84.7 78 60.3
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 1.3e-14 82.8 76 53.9
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.7e-14 82.4 76 60.5
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 1.7e-14 82.4 46 80.4
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 2.3e-14 82.0 81 59.3
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 2.3e-14 82.0 79 58.2
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 3.0e-14 81.6 77 58.4
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 3.9e-14 81.3 78 57.7
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 8.6e-14 80.1 65 60.0
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 8.6e-14 80.1 78 56.4
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 8.6e-14 80.1 46 76.1
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 1.1e-13 79.7 78 53.8
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 1.5e-13 79.3 77 54.5
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 1.5e-13 79.3 76 61.8
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 1.5e-13 79.3 60 63.3
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.5e-13 79.3 76 57.9
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 1.9e-13 79.0 76 56.6
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 1.9e-13 79.0 77 57.1
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 2.5e-13 78.6 66 54.5
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 2.5e-13 78.6 66 54.5
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 2.5e-13 78.6 65 58.5
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 2.5e-13 78.6 55 70.9
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 3.3e-13 78.2 77 57.1
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 3.3e-13 78.2 48 75.0
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 4.3e-13 77.8 45 77.8
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 4.3e-13 77.8 45 77.8
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 4.3e-13 77.8 45 77.8
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 4.3e-13 77.8 60 63.3
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 5.6e-13 77.4 78 53.8
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 5.6e-13 77.4 46 76.1
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 5.6e-13 77.4 78 53.8
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 5.6e-13 77.4 76 55.3
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 5.6e-13 77.4 77 53.2
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 5.6e-13 77.4 77 53.2
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 5.6e-13 77.4 77 57.1
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 7.3e-13 77.0 78 57.7
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 7.3e-13 77.0 77 55.8
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 7.3e-13 77.0 48 72.9
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 7.3e-13 77.0 76 53.9
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 1.2e-12 76.3 67 56.7
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 1.2e-12 76.3 44 75.0
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 1.2e-12 76.3 76 55.3
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 1.2e-12 76.3 76 55.3
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 1.2e-12 76.3 76 55.3
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 1.6e-12 75.9 64 60.9
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 1.6e-12 75.9 43 81.4
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 1.6e-12 75.9 48 72.9
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.6e-12 75.9 79 55.7
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 2.1e-12 75.5 77 54.5
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 2.1e-12 75.5 77 54.5
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 2.1e-12 75.5 46 71.7
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 3.6e-12 74.7 78 53.8
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 3.6e-12 74.7 73 56.2
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 3.6e-12 74.7 43 76.7
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 3.6e-12 74.7 43 76.7
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 3.6e-12 74.7 78 52.6
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 3.6e-12 74.7 77 54.5
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 4.7e-12 74.3 77 53.2
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 4.7e-12 74.3 76 53.9
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 6.2e-12 73.9 80 52.5
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 8.1e-12 73.6 77 53.2
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 8.1e-12 73.6 77 53.2
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 8.1e-12 73.6 77 54.5
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 8.1e-12 73.6 72 54.2
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 1.1e-11 73.2 76 53.9
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 1.1e-11 73.2 67 56.7
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 1.1e-11 73.2 76 53.9
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 1.4e-11 72.8 77 54.5
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 1.4e-11 72.8 43 76.7
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.4e-11 72.8 76 55.3
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 1.8e-11 72.4 77 54.5
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 1.8e-11 72.4 68 54.4
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 1.8e-11 72.4 47 74.5
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 1.8e-11 72.4 77 55.8
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 2.3e-11 72.0 57 64.9
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 2.3e-11 72.0 76 53.9
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 2.3e-11 72.0 76 53.9
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 3.1e-11 71.6 38 81.6
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 3.1e-11 71.6 60 56.7
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 4.0e-11 71.2 75 54.7
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 5.2e-11 70.9 77 51.9
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 5.2e-11 70.9 77 51.9
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 5.2e-11 70.9 72 55.6
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 6.8e-11 70.5 77 51.9
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 8.9e-11 70.1 76 53.9
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 8.9e-11 70.1 61 59.0
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 8.9e-11 70.1 77 53.2
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 8.9e-11 70.1 77 53.2
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 1.2e-10 69.7 77 51.9
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 1.2e-10 69.7 62 58.1
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 1.5e-10 69.3 51 72.5
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 1.5e-10 69.3 76 51.3
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 2.0e-10 68.9 67 55.2
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 2.6e-10 68.6 77 51.9
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 2.6e-10 68.6 77 51.9
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 2.6e-10 68.6 60 56.7
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 2.6e-10 68.6 76 52.6
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 1.3e-09 66.2 77 51.9
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.2e-09 65.5 67 47.8
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 2.2e-09 65.5 77 45.5
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 2.9e-09 65.1 73 52.1
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 2.9e-09 65.1 76 50.0
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 4.9e-09 64.3 75 50.7
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 6.4e-09 63.9 76 44.7
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 6.4e-09 63.9 76 51.3
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 1.1e-08 63.2 54 55.6
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 4.1e-08 61.2 61 52.5
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 5.4e-08 60.8 45 62.2
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 7.1e-08 60.5 36 72.2
CAN.G530.9 Capsicum annuum HOM05D000115 ORTHO05D000645 7.8e-07 57.0 38 68.4
Psat1g082200 Pisum sativum HOM05D004585 ORTHO05D005640 1.0e-06 56.6 43 62.8
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 3.0e-06 55.1 70 44.3


User provided reference genes

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