Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 1.3e-45 186.0 94 100.0
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 7.4e-33 143.7 83 88.0
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 5.8e-30 134.0 79 81.0
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 1.7e-21 105.9 73 71.2
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 8.4e-21 103.6 73 71.2
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 8.4e-21 103.6 73 71.2
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 8.4e-21 103.6 73 71.2
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 8.4e-21 103.6 73 69.9
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 3.2e-20 101.7 76 65.8
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 5.5e-20 100.9 76 65.8
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 7.1e-20 100.5 76 63.2
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 9.3e-20 100.1 76 64.5
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 2.1e-19 99.0 75 65.3
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 2.1e-19 99.0 73 65.8
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 2.7e-19 98.6 71 69.0
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 2.7e-19 98.6 76 60.5
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 4.6e-19 97.8 77 64.9
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 4.6e-19 97.8 76 64.5
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 4.6e-19 97.8 76 64.5
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 6.0e-19 97.4 78 59.0
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 6.0e-19 97.4 75 64.0
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 7.9e-19 97.1 77 64.9
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 1.3e-18 96.3 76 60.5
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 1.3e-18 96.3 77 62.3
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 1.3e-18 96.3 76 57.9
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 2.3e-18 95.5 77 63.6
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 2.3e-18 95.5 76 64.5
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 2.3e-18 95.5 73 64.4
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 2.3e-18 95.5 73 64.4
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 3.0e-18 95.1 73 68.5
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 3.9e-18 94.7 77 61.0
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 3.9e-18 94.7 73 64.4
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 5.1e-18 94.4 77 61.0
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 5.1e-18 94.4 76 63.2
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 5.1e-18 94.4 77 63.6
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 5.1e-18 94.4 71 67.6
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 6.7e-18 94.0 73 61.6
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 6.7e-18 94.0 71 64.8
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 6.7e-18 94.0 77 57.1
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 6.7e-18 94.0 73 64.4
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 6.7e-18 94.0 77 59.7
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 8.7e-18 93.6 76 59.2
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 8.7e-18 93.6 73 64.4
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 1.1e-17 93.2 75 62.7
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 1.1e-17 93.2 77 59.7
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 1.5e-17 92.8 75 61.3
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 1.9e-17 92.4 73 60.3
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 1.9e-17 92.4 73 60.3
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 1.9e-17 92.4 73 60.3
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 1.9e-17 92.4 73 60.3
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 1.9e-17 92.4 73 60.3
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 1.9e-17 92.4 73 60.3
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 1.9e-17 92.4 73 60.3
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 1.9e-17 92.4 73 61.6
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 1.9e-17 92.4 76 63.2
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 2.5e-17 92.0 76 55.3
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 3.3e-17 91.7 77 59.7
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 3.3e-17 91.7 71 60.6
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 3.3e-17 91.7 73 61.6
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 4.3e-17 91.3 73 58.9
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 4.3e-17 91.3 73 61.6
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 4.3e-17 91.3 73 61.6
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 4.3e-17 91.3 74 60.8
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 5.7e-17 90.9 76 61.8
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 5.7e-17 90.9 73 58.9
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 7.4e-17 90.5 73 61.6
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 7.4e-17 90.5 73 61.6
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 9.7e-17 90.1 73 63.0
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 9.7e-17 90.1 77 61.0
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 9.7e-17 90.1 71 63.4
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 1.3e-16 89.7 73 63.0
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 1.3e-16 89.7 75 61.3
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 1.6e-16 89.4 76 61.8
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 1.6e-16 89.4 73 57.5
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.6e-16 89.4 76 61.8
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 1.6e-16 89.4 60 70.0
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 1.6e-16 89.4 73 63.0
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 2.2e-16 89.0 77 57.1
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 2.2e-16 89.0 71 62.0
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 2.8e-16 88.6 76 60.5
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 3.7e-16 88.2 61 62.3
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 6.3e-16 87.4 73 61.6
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 6.3e-16 87.4 71 60.6
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 8.2e-16 87.0 73 63.0
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.1e-15 86.7 77 54.5
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 1.4e-15 86.3 76 59.2
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.4e-15 86.3 73 61.6
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 1.4e-15 86.3 75 58.7
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 1.4e-15 86.3 75 58.7
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 1.8e-15 85.9 76 55.3
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 2.4e-15 85.5 71 62.0
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 4.1e-15 84.7 75 58.7
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 4.1e-15 84.7 60 65.0
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 5.3e-15 84.3 76 59.2
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 5.3e-15 84.3 73 60.3
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 5.3e-15 84.3 73 60.3
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 5.3e-15 84.3 73 60.3
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 5.3e-15 84.3 75 57.3
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 6.9e-15 84.0 76 59.2
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 9.0e-15 83.6 81 56.8
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 1.2e-14 83.2 73 54.8
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.2e-14 83.2 79 55.7
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 1.2e-14 83.2 73 60.3
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 1.2e-14 83.2 76 55.3
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 1.5e-14 82.8 76 56.6
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 1.5e-14 82.8 75 60.0
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 2.0e-14 82.4 75 56.0
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 2.0e-14 82.4 71 60.6
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 2.6e-14 82.0 77 55.8
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 2.6e-14 82.0 76 52.6
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 3.4e-14 81.6 73 58.9
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 4.5e-14 81.3 62 64.5
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 5.9e-14 80.9 77 58.4
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 7.7e-14 80.5 76 56.6
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 7.7e-14 80.5 74 56.8
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 1.0e-13 80.1 76 51.3
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 1.3e-13 79.7 77 50.6
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 1.3e-13 79.7 76 55.3
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 1.3e-13 79.7 79 53.2
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 2.2e-13 79.0 60 61.7
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 8.5e-13 77.0 75 56.0
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 4.2e-12 74.7 71 52.1
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 5.5e-12 74.3 61 59.0
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 2.1e-11 72.4 79 51.9
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 4.6e-11 71.2 61 57.4
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 2.3e-10 68.9 77 48.1
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 2.3e-10 68.9 73 50.7
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 5.7e-09 64.3 75 49.3
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 7.4e-09 63.9 54 64.8
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 7.4e-09 63.9 60 51.7
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 2.8e-08 62.0 73 47.9
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 8.2e-08 60.5 43 60.5
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 3.1e-07 58.5 61 42.6
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 5.3e-07 57.8 54 53.7
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 2.6e-06 55.5 75 44.0
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 3.4e-06 55.1 61 39.3


User provided reference genes

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