Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1267400 Malus domestica HOM05D003410 ORTHO05D003881 4.7e-59 231.1 125 100.0
MD15G1267500 Malus domestica HOM05D003410 ORTHO05D003881 1.8e-31 139.4 93 82.8
MD00G1060300 Malus domestica HOM05D003410 ORTHO05D003881 8.6e-29 130.6 84 82.1
Prupe.8G216100 Prunus persica HOM05D003410 ORTHO05D003881 5.6e-28 127.9 84 78.6
CANSAT01G0813 Cannabis sativa HOM05D003410 ORTHO05D003881 1.3e-21 106.7 85 65.9
RcHm_v2.0_Chr6g0286751 Rosa chinensis HOM05D003410 ORTHO05D003881 5.0e-21 104.8 84 66.7
FAN27G2598 Fragaria x ananassa HOM05D003410 ORTHO05D003881 9.5e-20 100.5 82 64.6
FvH4_2g20580 Fragaria vesca HOM05D003410 ORTHO05D003881 2.1e-19 99.4 82 64.6
FAN24G0274 Fragaria x ananassa HOM05D003410 ORTHO05D003881 2.1e-19 99.4 82 64.6
FAN15G2918 Fragaria x ananassa HOM05D003410 ORTHO05D003881 3.6e-19 98.6 82 63.4
Thecc.01G251100 Theobroma cacao HOM05D003410 ORTHO05D003881 1.4e-18 96.7 84 59.5
PGR031G2487 Punica granatum HOM05D003410 ORTHO05D003881 1.8e-18 96.3 87 56.3
Duzib138G1667 Durio zibethinus HOM05D003410 ORTHO05D003881 3.1e-18 95.5 84 60.7
Cfa002479 Carpinus fangiana HOM05D003410 ORTHO05D003881 4.0e-18 95.1 86 60.5
Eucgr.K01430 Eucalyptus grandis HOM05D003410 ORTHO05D003881 4.0e-18 95.1 88 58.0
Haze_24698 Corylus avellana HOM05D003410 ORTHO05D003881 5.2e-18 94.7 86 60.5
Duzib133G1351 Durio zibethinus HOM05D003410 ORTHO05D003881 5.2e-18 94.7 84 58.3
Gorai.004G222400 Gossypium raimondii HOM05D003410 ORTHO05D003881 1.5e-17 93.2 84 57.1
Gohir.D08G210000 Gossypium hirsutum HOM05D003410 ORTHO05D003881 2.0e-17 92.8 84 56.0
Potri.014G192601 Populus trichocarpa HOM05D003410 ORTHO05D003881 2.0e-17 92.8 84 54.8
Gohir.A08G192000 Gossypium hirsutum HOM05D003410 ORTHO05D003881 3.4e-17 92.0 84 57.1
Gohir.D07G210200 Gossypium hirsutum HOM05D003410 ORTHO05D003881 4.4e-17 91.7 84 57.1
CiPaw.03G270300 Carya illinoinensis HOM05D003410 ORTHO05D003881 5.8e-17 91.3 85 56.5
Gohir.A07G204200 Gossypium hirsutum HOM05D003410 ORTHO05D003881 5.8e-17 91.3 84 57.1
Sabra14G0143300 Salix brachista HOM05D003410 ORTHO05D003881 1.3e-16 90.1 84 53.6
CSS0004045 Camellia sinensis var. sinensis HOM05D003410 ORTHO05D003881 1.7e-16 89.7 86 55.8
Gorai.001G237600 Gossypium raimondii HOM05D003410 ORTHO05D003881 2.2e-16 89.4 84 56.0
Sabra02G0195600 Salix brachista HOM05D003410 ORTHO05D003881 2.2e-16 89.4 86 57.0
Manes.12G036200 Manihot esculenta HOM05D003410 ORTHO05D003881 2.9e-16 89.0 91 53.8
Atru.chr5.1834 Acer truncatum HOM05D003410 ORTHO05D003881 3.7e-16 88.6 85 58.8
Lalb_Chr21g0314111 Lupinus albus HOM05D003410 ORTHO05D003881 3.7e-16 88.6 86 55.8
Potri.002G257200 Populus trichocarpa HOM05D003410 ORTHO05D003881 6.4e-16 87.8 86 54.7
CSS0024044 Camellia sinensis var. sinensis HOM05D003410 ORTHO05D003881 8.3e-16 87.4 86 54.7
Sed0017794 Sechium edule HOM05D003410 ORTHO05D003881 8.3e-16 87.4 84 53.6
COL.COLO4_10574 Corchorus olitorius HOM05D003410 ORTHO05D003881 1.4e-15 86.7 83 53.0
Sed0016490 Sechium edule HOM05D003410 ORTHO05D003881 1.4e-15 86.7 84 52.4
Gohir.D07G158100 Gossypium hirsutum HOM05D003410 ORTHO05D003881 1.9e-15 86.3 84 52.4
Glyma.13G126900 Glycine max HOM05D003410 ORTHO05D003881 2.4e-15 85.9 82 52.4
Gohir.A07G151800 Gossypium hirsutum HOM05D003410 ORTHO05D003881 2.4e-15 85.9 84 52.4
Phvul.007G189500 Phaseolus vulgaris HOM05D003410 ORTHO05D003881 3.2e-15 85.5 84 52.4
Glyma.10G040200 Glycine max HOM05D003410 ORTHO05D003881 4.1e-15 85.1 82 52.4
Gorai.001G181300 Gossypium raimondii HOM05D003410 ORTHO05D003881 7.0e-15 84.3 84 51.2
Glyma.11G168500 Glycine max HOM05D003410 ORTHO05D003881 9.2e-15 84.0 82 52.4
Cpa.g.sc87.22 Carica papaya HOM05D003410 ORTHO05D003881 1.2e-14 83.6 73 57.5
Rhsim01G0260900 Rhododendron simsii HOM05D000074 ORTHO05D011471 3.5e-14 82.0 86 50.0
TAR365G0976 Trochodendron aralioides HOM05D003410 ORTHO05D003881 4.6e-14 81.6 88 52.3
GSVIVG01028415001 Vitis vinifera HOM05D003410 ORTHO05D003881 6.0e-14 81.3 86 54.7
Nn1g02957 Nelumbo nucifera HOM05D003410 ORTHO05D003881 1.3e-13 80.1 88 53.4
Nitab4.5_0000592g0420 Nicotiana tabacum HOM05D003410 ORTHO05D003881 1.3e-13 80.1 74 52.7
Nitab4.5_0002210g0040 Nicotiana tabacum HOM05D003410 ORTHO05D003881 1.3e-13 80.1 74 52.7
TAR633G0988 Trochodendron aralioides HOM05D003410 ORTHO05D003881 1.7e-13 79.7 88 50.0
Actinidia09517 Actinidia chinensis HOM05D003410 ORTHO05D003881 2.3e-13 79.3 86 52.3
Ca_09650_v3 Cicer arietinum L. HOM05D003410 ORTHO05D003881 2.3e-13 79.3 83 50.6
Glyma.11G177400 Glycine max HOM05D003410 ORTHO05D003881 2.3e-13 79.3 82 46.3
Peaxi162Scf01157g00006 Petunia axillaris HOM05D003410 ORTHO05D003881 3.0e-13 79.0 86 53.5
Actinidia39930 Actinidia chinensis HOM05D003410 ORTHO05D003881 3.9e-13 78.6 86 50.0
Dinv27112 Davidia involucrata HOM05D006857 ORTHO05D008679 3.9e-13 78.6 81 53.1
Nn3g19777 Nelumbo nucifera HOM05D003410 ORTHO05D003881 5.1e-13 78.2 88 54.5
Nitab4.5_0000326g0310 Nicotiana tabacum HOM05D003410 ORTHO05D003881 5.1e-13 78.2 86 54.7
Nitab4.5_0009671g0040 Nicotiana tabacum HOM05D003410 ORTHO05D003881 8.6e-13 77.4 112 47.3
CSS0029259 Camellia sinensis var. sinensis HOM05D003410 ORTHO05D003881 1.1e-12 77.0 86 50.0
Lalb_Chr03g0036961 Lupinus albus HOM05D003410 ORTHO05D003881 1.1e-12 77.0 74 50.0
TAR362G0673 Trochodendron aralioides HOM05D003410 ORTHO05D003881 1.1e-12 77.0 88 52.3
CDE01G0063 Ceratophyllum demersum HOM05D003410 ORTHO05D003881 1.9e-12 76.3 73 56.2
Dinv29803 Davidia involucrata HOM05D000001 ORTHO05D011120 1.9e-12 76.3 70 58.6
Peaxi162Scf00319g00058 Petunia axillaris HOM05D003410 ORTHO05D003881 2.5e-12 75.9 66 54.5
Psat6g062760 Pisum sativum HOM05D003410 ORTHO05D003881 2.5e-12 75.9 84 47.6
Manes.03G159000 Manihot esculenta HOM05D003410 ORTHO05D003881 4.3e-12 75.1 98 48.0
Prupe.1G047800 Prunus persica HOM05D003410 ORTHO05D003881 4.3e-12 75.1 66 57.6
Solyc03g005700.1 Solanum lycopersicum HOM05D003410 ORTHO05D003881 4.3e-12 75.1 66 56.1
Sopen03g001710 Solanum pennellii HOM05D003410 ORTHO05D003881 4.3e-12 75.1 66 56.1
CARHR179430 Cardamine hirsuta HOM05D003410 ORTHO05D003881 5.6e-12 74.7 65 55.4
Ca_11898_v3 Cicer arietinum L. HOM05D003410 ORTHO05D003881 5.6e-12 74.7 61 60.7
Lj5g0002672 Lotus japonicus HOM05D003410 ORTHO05D003881 5.6e-12 74.7 87 49.4
TWI53G1829 Tripterygium wilfordii HOM05D003410 ORTHO05D003881 5.6e-12 74.7 90 51.1
vmacro15478 Vaccinium macrocarpon HOM05D003410 ORTHO05D003881 5.6e-12 74.7 86 47.7
AT5G43970 Arabidopsis thaliana HOM05D003410 ORTHO05D003881 7.3e-12 74.3 65 53.8
Solyc06g008120.1 Solanum lycopersicum HOM05D003410 ORTHO05D003881 7.3e-12 74.3 87 50.6
Sopen06g002930 Solanum pennellii HOM05D003410 ORTHO05D003881 7.3e-12 74.3 87 50.6
THA.LOC104801123 Tarenaya hassleriana HOM05D003410 ORTHO05D003881 9.5e-12 73.9 65 55.4
BcaB07g30549 Brassica carinata HOM05D003410 ORTHO05D003881 1.6e-11 73.2 65 55.4
BolC7t43180H Brassica oleracea HOM05D003410 ORTHO05D003881 1.6e-11 73.2 88 46.6
Sp2g08800 Schrenkiella parvula HOM05D003410 ORTHO05D003881 1.6e-11 73.2 65 55.4
Sed0015699 Sechium edule HOM05D003410 ORTHO05D003881 1.6e-11 73.2 70 58.6
Aa31LG5G3300 Aethionema arabicum HOM05D003410 ORTHO05D003881 2.1e-11 72.8 65 52.3
AL8G16140 Arabidopsis lyrata HOM05D003410 ORTHO05D003881 2.1e-11 72.8 83 44.6
BcaC06g34608 Brassica carinata HOM05D003410 ORTHO05D003881 2.1e-11 72.8 80 48.8
BcaC06g34614 Brassica carinata HOM05D003410 ORTHO05D003881 2.1e-11 72.8 80 48.8
C07p26430 Brassica napus HOM05D003410 ORTHO05D003881 2.1e-11 72.8 80 48.8
C07p26530 Brassica napus HOM05D003410 ORTHO05D003881 2.1e-11 72.8 80 48.8
BolC7t43173H Brassica oleracea HOM05D003410 ORTHO05D003881 2.1e-11 72.8 80 48.8
HanXRQChr05g0147801 Helianthus annuus HOM05D003410 ORTHO05D003881 2.1e-11 72.8 72 55.6
Lalb_Chr19g0128521 Lupinus albus HOM05D003410 ORTHO05D003881 2.1e-11 72.8 73 50.7
MBI10_g35429_MAGBIO Magnolia biondii HOM05D003410 ORTHO05D003881 2.1e-11 72.8 69 55.1
PGSC0003DMG400013457 Solanum tuberosum HOM05D003410 ORTHO05D003881 2.1e-11 72.8 66 54.5
MD13G1221200 Malus domestica HOM05D003410 ORTHO05D003881 2.8e-11 72.4 66 56.1
Rhsim02G0043700 Rhododendron simsii HOM05D003410 ORTHO05D003881 2.8e-11 72.4 75 49.3
TWI73G1070 Tripterygium wilfordii HOM05D003410 ORTHO05D003881 2.8e-11 72.4 80 52.5
Migut.D00472 Erythranthe guttata HOM05D003410 ORTHO05D003881 3.6e-11 72.0 77 48.1
Thhalv10003294m.g Eutrema salsugineum HOM05D003410 ORTHO05D003881 3.6e-11 72.0 65 53.8
Lsat_1_v5_gn_2_104281 Lactuca sativa HOM05D003410 ORTHO05D003881 4.7e-11 71.6 72 52.8
Medtr1g045505 Medicago truncatula HOM05D003410 ORTHO05D003881 4.7e-11 71.6 67 53.7
Sc13g0003120 Simmondsia chinensis HOM05D003410 ORTHO05D003881 4.7e-11 71.6 67 56.7
GSVIVG01027914001 Vitis vinifera HOM05D003410 ORTHO05D003881 4.7e-11 71.6 71 53.5
BcaC03g16619 Brassica carinata HOM05D003410 ORTHO05D003881 6.2e-11 71.2 65 53.8
C02p44520 Brassica napus HOM05D003410 ORTHO05D003881 6.2e-11 71.2 65 53.8
Carub.0008s0458 Capsella rubella HOM05D003410 ORTHO05D003881 8.1e-11 70.9 65 52.3
CiPaw.01G178000 Carya illinoinensis HOM05D003410 ORTHO05D003881 8.1e-11 70.9 77 51.9
A06p47590 Brassica napus HOM05D003410 ORTHO05D003881 1.1e-10 70.5 80 48.8
A09p20730 Brassica napus HOM05D003410 ORTHO05D003881 1.1e-10 70.5 86 43.0
BraA06t27627Z Brassica rapa HOM05D003410 ORTHO05D003881 1.1e-10 70.5 80 48.8
BraA09t37677Z Brassica rapa HOM05D003410 ORTHO05D003881 1.1e-10 70.5 86 43.0
Duzib151G0669 Durio zibethinus HOM05D003410 ORTHO05D003881 1.1e-10 70.5 70 58.6
Duzib212G0034 Durio zibethinus HOM05D003410 ORTHO05D003881 1.4e-10 70.1 84 52.4
Atru.chr4.1916 Acer truncatum HOM05D003410 ORTHO05D003881 1.8e-10 69.7 72 55.6
BcaC04g21879 Brassica carinata HOM05D003410 ORTHO05D003881 1.8e-10 69.7 83 44.6
C09p26240 Brassica napus HOM05D003410 ORTHO05D003881 1.8e-10 69.7 83 44.6
BolC9t55525H Brassica oleracea HOM05D003410 ORTHO05D003881 1.8e-10 69.7 83 44.6
QL06p020998 Quercus lobata HOM05D003410 ORTHO05D003881 1.8e-10 69.7 72 51.4
MELO3C023044.2 Cucumis melo HOM05D003410 ORTHO05D003881 2.3e-10 69.3 79 51.9
CsaV3_2G012420 Cucumis sativus L. HOM05D003410 ORTHO05D003881 2.3e-10 69.3 79 51.9
ECA232G0562 Erigeron canadensis HOM05D003410 ORTHO05D003881 2.3e-10 69.3 71 50.7
CAN.G941.30 Capsicum annuum HOM05D003410 ORTHO05D003881 3.1e-10 68.9 62 56.5
THA.LOC104815972 Tarenaya hassleriana HOM05D003410 ORTHO05D003881 3.1e-10 68.9 65 50.8
Lsat_1_v5_gn_0_8120 Lactuca sativa HOM05D003410 ORTHO05D003881 4.0e-10 68.6 72 50.0
Lj6E621T0 Lonicera japonica HOM05D003410 ORTHO05D003881 4.0e-10 68.6 62 54.8
unitig_0.g2245 Utricularia gibba HOM05D003410 ORTHO05D003881 4.0e-10 68.6 80 45.0
BcaB07g30984 Brassica carinata HOM05D003410 ORTHO05D003881 5.2e-10 68.2 83 43.4
Sed0011790 Sechium edule HOM05D003410 ORTHO05D003881 5.2e-10 68.2 70 52.9
HPP92_025323 Vanilla planifolia HOM05D003410 ORTHO05D003881 5.2e-10 68.2 69 43.5
AL1G13670 Arabidopsis lyrata HOM05D003410 ORTHO05D003881 6.8e-10 67.8 74 47.3
Manes.15G045700 Manihot esculenta HOM05D003410 ORTHO05D003881 6.8e-10 67.8 86 46.5
Zm00001eb038560 Zea mays HOM05D003410 ORTHO05D003881 6.8e-10 67.8 64 53.1
Lj6g0010954 Lotus japonicus HOM05D003410 ORTHO05D003881 8.9e-10 67.4 61 49.2
SalBow4G2851 Salvia bowleyana HOM05D003410 ORTHO05D003881 8.9e-10 67.4 69 50.7
CAN.G638.38 Capsicum annuum HOM05D003410 ORTHO05D003881 1.2e-09 67.0 72 48.6
Cfa014780 Carpinus fangiana HOM05D003410 ORTHO05D003881 1.2e-09 67.0 77 50.6
Cfa021012 Carpinus fangiana HOM05D003410 ORTHO05D003881 1.2e-09 67.0 77 50.6
RcHm_v2.0_Chr4g0395371 Rosa chinensis HOM05D003410 ORTHO05D003881 1.2e-09 67.0 67 49.3
Migut.N00301 Erythranthe guttata HOM05D003410 ORTHO05D003881 2.0e-09 66.2 83 43.4
Thhalv10009189m.g Eutrema salsugineum HOM05D003410 ORTHO05D003881 2.0e-09 66.2 65 49.2
Os02g0496900 Oryza sativa ssp. japonica HOM05D003410 ORTHO05D003881 2.0e-09 66.2 76 47.4
CARHR003410 Cardamine hirsuta HOM05D003410 ORTHO05D003881 2.6e-09 65.9 73 43.8
Ciclev10006291m.g Citrus clementina HOM05D003410 ORTHO05D003881 2.6e-09 65.9 62 56.5
SHI01392 Sapria himalayana HOM05D003410 ORTHO05D003881 2.6e-09 65.9 81 44.4
Carub.0001s0322 Capsella rubella HOM05D003410 ORTHO05D003881 3.4e-09 65.5 74 50.0
ClCG05G004000 Citrullus lanatus HOM05D006857 ORTHO05D008679 3.4e-09 65.5 69 52.2
Medtr1g069560 Medicago truncatula HOM05D003410 ORTHO05D003881 3.4e-09 65.5 82 42.7
Thecc.04G263900 Theobroma cacao HOM05D003410 ORTHO05D003881 3.4e-09 65.5 70 52.9
unitig_52.g17406 Utricularia gibba HOM05D003410 ORTHO05D003881 3.4e-09 65.5 99 39.4
COL.COLO4_28885 Corchorus olitorius HOM05D003410 ORTHO05D003881 5.8e-09 64.7 76 46.1
DCAR_000567 Daucus carota HOM05D003410 ORTHO05D003881 5.8e-09 64.7 62 54.8
HanXRQChr11g0321361 Helianthus annuus HOM05D003410 ORTHO05D003881 5.8e-09 64.7 72 45.8
SEGI_13440 Sequoiadendron giganteum HOM05D003410 ORTHO05D003881 5.8e-09 64.7 89 43.8
Rhsim04G0172400 Rhododendron simsii HOM05D003410 ORTHO05D003881 7.5e-09 64.3 80 43.8
TAR636G2865 Trochodendron aralioides HOM05D003410 ORTHO05D003881 7.5e-09 64.3 88 46.6
AT1G04070 Arabidopsis thaliana HOM05D003410 ORTHO05D003881 9.9e-09 63.9 73 43.8
QL12p002452 Quercus lobata HOM05D003410 ORTHO05D003881 9.9e-09 63.9 72 50.0
Aa31LG1G20770 Aethionema arabicum HOM05D003410 ORTHO05D003881 1.7e-08 63.2 66 45.5
Sp1g02890 Schrenkiella parvula HOM05D003410 ORTHO05D003881 1.7e-08 63.2 65 49.2
CsaV3_3G011700 Cucumis sativus L. HOM05D003410 ORTHO05D003881 2.9e-08 62.4 69 52.2
Oeu011221.1 Olea europaea HOM05D003410 ORTHO05D003881 3.7e-08 62.0 61 50.8
BcaC05g24474 Brassica carinata HOM05D003410 ORTHO05D003881 4.9e-08 61.6 65 46.2
A10p02530 Brassica napus HOM05D003410 ORTHO05D003881 4.9e-08 61.6 65 46.2
BolC5t29012H Brassica oleracea HOM05D003410 ORTHO05D003881 4.9e-08 61.6 65 46.2
Sed0022275 Sechium edule HOM05D006857 ORTHO05D008679 4.9e-08 61.6 67 50.7
Gohir.A10G107800 Gossypium hirsutum HOM05D003410 ORTHO05D003881 6.4e-08 61.2 67 53.7
PSO013G0207 Papaver somniferum HOM05D003410 ORTHO05D003881 1.1e-07 60.5 88 39.8
PSO832G0849 Papaver somniferum HOM05D003410 ORTHO05D003881 1.1e-07 60.5 88 39.8
CANSAT78G1185 Cannabis sativa HOM05D003410 ORTHO05D003881 1.4e-07 60.1 70 44.3
CiPaw.02G107100 Carya illinoinensis HOM05D003410 ORTHO05D003881 1.4e-07 60.1 77 46.8
TAR688G0001 Trochodendron aralioides HOM05D003410 ORTHO05D003881 1.4e-07 60.1 50 58.0
EL10Ac3g06578 Beta vulgaris HOM05D003410 ORTHO05D003881 1.9e-07 59.7 66 51.5
Gohir.D10G158500 Gossypium hirsutum HOM05D003410 ORTHO05D003881 1.9e-07 59.7 67 52.2
Gorai.011G178100 Gossypium raimondii HOM05D003410 ORTHO05D003881 1.9e-07 59.7 67 52.2
BraA10t42522Z Brassica rapa HOM05D003410 ORTHO05D003881 2.4e-07 59.3 65 44.6
TAR633G0085 Trochodendron aralioides HOM05D003410 ORTHO05D003881 2.4e-07 59.3 60 53.3
TAR633G1475 Trochodendron aralioides HOM05D003410 ORTHO05D003881 2.4e-07 59.3 60 53.3
Ah.10g030800 Amaranthus hybridus HOM05D003410 ORTHO05D003881 7.1e-07 57.8 60 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1763 Anthoceros agrestis HOM05D003410 ORTHO05D003881 7.1e-07 57.8 69 47.8
Os02g0131600 Oryza sativa ssp. japonica HOM05D003410 ORTHO05D003881 7.1e-07 57.8 76 47.4
Aqoxy2G00979 Aquilegia oxysepala HOM05D003410 ORTHO05D003881 3.5e-06 55.5 69 43.5


User provided reference genes

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