Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1230600 Malus domestica HOM05D004017 ORTHO05D004612 0.0e+00 1838.9 903 100.0
MD02G1114700 Malus domestica HOM05D004017 ORTHO05D004612 0.0e+00 1331.6 984 71.5
Prupe.7G183500 Prunus persica HOM05D004017 ORTHO05D004612 0.0e+00 1105.9 1000 61.7
RcHm_v2.0_Chr2g0097091 Rosa chinensis HOM05D004017 ORTHO05D004612 2.1e-257 892.9 1004 52.0
FAN26G0543 Fragaria x ananassa HOM05D004017 ORTHO05D004612 1.3e-240 837.0 1011 50.0
FAN28G2227 Fragaria x ananassa HOM05D004017 ORTHO05D004612 1.3e-240 837.0 1002 50.1
FAN23G1226 Fragaria x ananassa HOM05D004017 ORTHO05D004612 3.0e-240 835.9 1025 49.6
FvH4_1g10270 Fragaria vesca HOM05D004017 ORTHO05D004612 6.7e-240 834.7 1002 50.6
FAN19G1215 Fragaria x ananassa HOM05D004017 ORTHO05D004612 5.7e-215 751.9 954 49.0
QL06p053019 Quercus lobata HOM05D004017 ORTHO05D004612 9.7e-191 671.4 1048 43.1
Atru.chr3.129 Acer truncatum HOM05D004017 ORTHO05D004612 3.2e-173 613.2 1008 39.9
Sabra05G0084300 Salix brachista HOM05D004017 ORTHO05D004612 5.8e-159 565.8 998 40.2
GSVIVG01026635001 Vitis vinifera HOM05D004017 ORTHO05D004612 2.4e-157 560.5 990 39.8
Potri.005G101900 Populus trichocarpa HOM05D004017 ORTHO05D004612 1.2e-156 558.1 1001 38.9
TWI09G1144 Tripterygium wilfordii HOM05D004017 ORTHO05D004612 1.3e-155 554.7 990 38.5
Duzib147G1448 Durio zibethinus HOM05D004017 ORTHO05D004612 1.3e-150 538.1 982 38.1
Thecc.01G005000 Theobroma cacao HOM05D004017 ORTHO05D004612 1.6e-145 521.2 987 37.0
Manes.02G114300 Manihot esculenta HOM05D004017 ORTHO05D004612 8.4e-142 508.8 959 38.0
Actinidia22894 Actinidia chinensis HOM05D004017 ORTHO05D004612 1.9e-141 507.7 1107 34.8
Gohir.A02G178100 Gossypium hirsutum HOM05D004017 ORTHO05D004612 1.6e-140 504.6 993 37.4
Gorai.003G002000 Gossypium raimondii HOM05D004017 ORTHO05D004612 6.6e-139 499.2 986 37.0
Dinv28321 Davidia involucrata HOM05D004017 ORTHO05D004612 1.9e-133 481.1 790 40.3
COL.COLO4_22554 Corchorus olitorius HOM05D004017 ORTHO05D004612 2.7e-132 477.2 985 35.6
Glyma.01G158400 Glycine max HOM05D004017 ORTHO05D004612 2.3e-131 474.2 990 36.4
Rhsim10G0195200 Rhododendron simsii HOM05D004017 ORTHO05D004612 2.3e-131 474.2 964 36.5
Gohir.D03G001700 Gossypium hirsutum HOM05D004017 ORTHO05D004612 2.8e-129 467.2 969 36.3
CANSAT25G1082 Cannabis sativa HOM05D004017 ORTHO05D004612 6.9e-128 462.6 877 38.0
Lj2g0020546 Lotus japonicus HOM05D004017 ORTHO05D004612 1.5e-127 461.5 980 36.4
Cpa.g.sc6.367 Carica papaya HOM05D004017 ORTHO05D004612 3.4e-127 460.3 935 36.1
Sed0025898 Sechium edule HOM05D004017 ORTHO05D004612 5.8e-127 459.5 999 37.0
Phvul.002G116900 Phaseolus vulgaris HOM05D004017 ORTHO05D004612 1.3e-126 458.4 1077 34.1
Ciclev10024702m.g Citrus clementina HOM05D004017 ORTHO05D004612 4.2e-125 453.4 1190 32.8
Eucgr.J02538 Eucalyptus grandis HOM05D004017 ORTHO05D004612 4.2e-125 453.4 997 35.9
TPR.G33889 Trifolium pratense HOM05D004017 ORTHO05D004612 2.7e-124 450.7 1031 34.3
Ca_24985_v3 Cicer arietinum L. HOM05D004017 ORTHO05D004612 1.6e-121 441.4 1000 34.7
Medtr5g024250 Medicago truncatula HOM05D004017 ORTHO05D004612 9.0e-120 435.6 1024 34.4
Nn6g31689 Nelumbo nucifera HOM05D004017 ORTHO05D004612 6.5e-118 429.5 1032 33.5
Hma1.2p1_0300F.1_g117960 Hydrangea macrophylla HOM05D004017 ORTHO05D004612 4.2e-117 426.8 1003 33.9
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 1.0e-115 422.2 1069 33.2
CiPaw.07G002300 Carya illinoinensis HOM05D004017 ORTHO05D004612 2.8e-113 414.1 505 48.1
PGR142G4352 Punica granatum HOM05D004017 ORTHO05D004612 1.4e-112 411.8 923 34.9
Psat2g148040 Pisum sativum HOM05D004017 ORTHO05D004612 4.1e-112 410.2 1020 33.4
HanXRQChr14g0442551 Helianthus annuus HOM05D004017 ORTHO05D004612 2.9e-110 404.1 939 34.7
MELO3C013715.2 Cucumis melo HOM05D004017 ORTHO05D004612 1.4e-109 401.7 1000 33.9
PSO541G0703 Papaver somniferum HOM05D004017 ORTHO05D004612 3.2e-109 400.6 1048 32.8
TAR628G0231 Trochodendron aralioides HOM05D004017 ORTHO05D004612 1.2e-108 398.7 925 33.2
Cc07_g11910 Coffea canephora HOM05D004017 ORTHO05D004612 2.1e-108 397.9 978 34.3
CARHR243850 Cardamine hirsuta HOM05D004017 ORTHO05D004612 1.9e-106 391.3 998 33.7
Sopen02g027400 Solanum pennellii HOM05D004017 ORTHO05D004612 7.4e-106 389.4 1016 32.0
Aqoxy6G01621 Aquilegia oxysepala HOM05D004017 ORTHO05D004612 1.8e-104 384.8 1082 31.1
Peaxi162Scf00121g02447 Petunia axillaris HOM05D004017 ORTHO05D004612 2.4e-104 384.4 1002 32.4
Solyc02g082660.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 5.3e-104 383.3 1017 30.8
Thhalv10024245m.g Eutrema salsugineum HOM05D004017 ORTHO05D004612 1.3e-102 378.6 1024 31.9
Migut.L00849 Erythranthe guttata HOM05D004017 ORTHO05D004612 1.7e-102 378.3 982 33.5
AT4G35520 Arabidopsis thaliana HOM05D004017 ORTHO05D004612 2.9e-102 377.5 966 34.1
Lalb_Chr16g0380061 Lupinus albus HOM05D004017 ORTHO05D004612 3.2e-101 374.0 848 35.6
C07p61210 Brassica napus HOM05D004017 ORTHO05D004612 2.1e-100 371.3 992 33.2
AL7G15650 Arabidopsis lyrata HOM05D004017 ORTHO05D004612 3.6e-100 370.5 993 32.6
BraA03t15435Z Brassica rapa HOM05D004017 ORTHO05D004612 6.1e-100 369.8 995 32.5
A03p63640 Brassica napus HOM05D004017 ORTHO05D004612 7.9e-100 369.4 982 32.6
BolC7t46547H Brassica oleracea HOM05D004017 ORTHO05D004612 1.8e-99 368.2 989 32.4
THA.LOC104819715 Tarenaya hassleriana HOM05D004017 ORTHO05D004612 1.8e-99 368.2 981 32.6
DCAR_016694 Daucus carota HOM05D004017 ORTHO05D004612 4.8e-97 360.1 1004 31.8
CAN.G1238.14 Capsicum annuum HOM05D004017 ORTHO05D004612 6.9e-96 356.3 1034 30.6
ECA238G2486 Erigeron canadensis HOM05D004017 ORTHO05D004612 2.9e-94 350.9 800 34.5
Aa31LG6G12480 Aethionema arabicum HOM05D004017 ORTHO05D004612 5.1e-91 340.1 1017 30.6
AUR62002051 Chenopodium quinoa HOM05D004017 ORTHO05D004612 2.4e-88 331.3 1051 29.2
Carub.0007s0480 Capsella rubella HOM05D004017 ORTHO05D004612 7.0e-88 329.7 452 44.0
SGA_v2.0_scaffold61G21182 Striga asiatica HOM05D004017 ORTHO05D004612 1.5e-87 328.6 1029 30.5
vmacro20628 Vaccinium macrocarpon HOM05D004017 ORTHO05D004612 7.7e-87 326.2 973 30.5
Lsat_1_v5_gn_2_73681 Lactuca sativa HOM05D004017 ORTHO05D004612 1.9e-85 321.6 911 32.4
AUR62003744 Chenopodium quinoa HOM05D004017 ORTHO05D004612 4.7e-84 317.0 503 41.4
Migut.L00851 Erythranthe guttata HOM05D004017 ORTHO05D004612 1.0e-83 315.8 913 31.5
Hund03598 Selenicereus undatus HOM05D004017 ORTHO05D004612 5.2e-83 313.5 313 54.0
Nitab4.5_0004608g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 6.7e-83 313.2 273 58.2
ATR0807G175 Amborella trichopoda HOM05D004017 ORTHO05D004612 1.7e-81 308.5 432 44.2
Nitab4.5_0001467g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 3.7e-81 307.4 504 38.5
Sp7g33300 Schrenkiella parvula HOM05D004017 ORTHO05D004612 1.1e-80 305.8 959 31.0
Os09g0551900 Oryza sativa ssp. japonica HOM05D004017 ORTHO05D004612 9.4e-77 292.7 963 27.7
HPP92_020507 Vanilla planifolia HOM05D004017 ORTHO05D004612 9.4e-77 292.7 1016 28.6
Zm00001eb104330 Zea mays HOM05D004017 ORTHO05D004612 8.8e-75 286.2 963 28.5
Zm00001eb104360 Zea mays HOM05D004017 ORTHO05D004612 8.8e-75 286.2 963 28.5
CSS0034748 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 5.0e-70 270.4 217 65.9
CSS0022647 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.1e-69 269.2 217 65.9
CSS0019676 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.5e-69 268.9 216 65.7
CSS0031153 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.5e-69 268.9 217 65.4
CSS0016610 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.5e-69 268.1 217 65.0
unitig_747.g21784 Utricularia gibba HOM05D004017 ORTHO05D004612 2.1e-68 265.0 400 42.2
Oeu045735.2 Olea europaea HOM05D004017 ORTHO05D004612 3.4e-66 257.7 877 29.9
CsaV3_3G000200 Cucumis sativus L. HOM05D004017 ORTHO05D004612 1.5e-61 242.3 863 28.5
Zm00001eb104340 Zea mays HOM05D004017 ORTHO05D004612 5.6e-53 213.8 261 43.7
Sc03g0003980 Simmondsia chinensis HOM05D004017 ORTHO05D004612 4.1e-48 197.6 941 27.0
SHI29525 Sapria himalayana HOM05D004017 ORTHO05D004612 6.2e-44 183.7 209 47.8
Pp3c13_10410 Physcomitrium patens HOM05D004017 ORTHO05D004612 3.4e-42 177.9 265 38.5
Mapoly0006s0222 Marchantia polymorpha HOM05D004017 ORTHO05D004612 7.5e-42 176.8 292 40.1
arahy.Tifrunner.gnm1.ann1.IMTK78 Arachis hypogaea HOM05D004017 ORTHO05D004612 3.7e-41 174.5 157 60.5
Lj2A500T36 Lonicera japonica HOM05D004017 ORTHO05D004612 8.3e-41 173.3 733 29.2
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 2.7e-39 168.3 230 44.8
TAR628G0604 Trochodendron aralioides HOM05D004017 ORTHO05D004612 2.5e-37 161.8 130 64.6
arahy.Tifrunner.gnm1.ann1.BKHX3W Arachis hypogaea HOM05D004017 ORTHO05D004612 2.9e-33 148.3 592 28.2
arahy.Tifrunner.gnm1.ann1.LHXL5N Arachis hypogaea HOM05D004017 ORTHO05D004612 2.9e-33 148.3 592 28.2
Lsat_1_v5_gn_5_57160 Lactuca sativa HOM05D004017 ORTHO05D004612 3.5e-23 114.8 251 31.9
Dinv28320 Davidia involucrata HOM05D004017 ORTHO05D004612 2.5e-21 108.6 127 48.8
Glyma.11G086300 Glycine max HOM05D004017 ORTHO05D004612 5.6e-21 107.5 469 26.0
arahy.Tifrunner.gnm1.ann1.4CZ79I Arachis hypogaea HOM05D004017 ORTHO05D004612 2.6e-18 98.6 72 63.9
arahy.Tifrunner.gnm1.ann1.FZX4ED Arachis hypogaea HOM05D004017 ORTHO05D004612 2.6e-18 98.6 72 63.9
Nitab4.5_0004608g0010 Nicotiana tabacum HOM05D004017 ORTHO05D004612 1.3e-17 96.3 627 23.1
arahy.Tifrunner.gnm1.ann1.0EHY87 Arachis hypogaea HOM05D004017 ORTHO05D004612 1.4e-16 92.8 92 57.6
ClCG10G000180 Citrullus lanatus HOM05D004017 ORTHO05D004612 1.6e-15 89.4 109 52.3
PRCOL_00002079 Prasinoderma coloniale HOM05D004017 ORTHO05D004612 2.7e-15 88.6 270 29.6
CBR_g57065 Chara braunii HOM05D004017 ORTHO05D004612 6.0e-15 87.4 163 35.0
CDE06G0086 Ceratophyllum demersum HOM05D004017 ORTHO05D004612 1.1e-13 83.2 85 54.1
PGSC0003DMG400024935 Solanum tuberosum HOM05D004017 ORTHO05D004612 3.3e-13 81.6 74 55.4
SHI29523 Sapria himalayana HOM05D004017 ORTHO05D004612 2.8e-12 78.6 62 62.9
MCO07G573 Micromonas commoda HOM05D004017 ORTHO05D004612 5.3e-11 74.3 216 28.7
Ah.03g142840 Amaranthus hybridus HOM05D004017 ORTHO05D004612 6.9e-11 73.9 56 58.9
SalBow6G5056 Salvia bowleyana HOM05D004017 ORTHO05D004612 9.0e-11 73.6 76 50.0
Cre07.g336650 Chlamydomonas reinhardtii HOM05D004017 ORTHO05D004612 1.2e-10 73.2 314 26.1
ATR0807G072 Amborella trichopoda HOM05D004017 ORTHO05D004612 2.6e-10 72.0 90 46.7
CSS0016280 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 4.5e-10 71.2 50 66.0
Sopen01g042070 Solanum pennellii HOM05D004017 ORTHO05D004612 1.3e-09 69.7 53 64.2
CSS0016202 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.9e-09 68.6 50 64.0
CSS0016684 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.9e-09 68.6 50 64.0
CSS0018094 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.9e-09 68.6 50 64.0
CSS0024207 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.9e-09 68.6 50 64.0
CSS0032900 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.9e-09 68.6 50 64.0
CSS0017200 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.1e-08 66.6 50 62.0
Nitab4.5_0001467g0040 Nicotiana tabacum HOM05D004017 ORTHO05D004612 1.4e-08 66.2 129 35.7
CSS0002700 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 3.5e-07 61.6 48 58.3
Ah.03g142850 Amaranthus hybridus HOM05D004017 ORTHO05D004612 6.0e-07 60.8 290 24.8
Solyc01g098520.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 3.9e-06 58.2 94 34.0


User provided reference genes

Program Settings