Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1183800 Malus domestica HOM05D006226 ORTHO05D007738 0.0e+00 1392.1 696 100.0
Prupe.7G232400 Prunus persica HOM05D006226 ORTHO05D007738 0.0e+00 1081.2 698 79.4
RcHm_v2.0_Chr2g0090271 Rosa chinensis HOM05D006226 ORTHO05D007738 1.9e-282 975.7 697 71.4
FvH4_1g04570 Fragaria vesca HOM05D006226 ORTHO05D007738 3.1e-277 958.4 697 69.4
FAN19G1825 Fragaria x ananassa HOM05D006226 ORTHO05D007738 2.6e-276 955.3 697 69.3
FAN26G0472 Fragaria x ananassa HOM05D006226 ORTHO05D007738 4.9e-275 951.0 697 69.0
FAN23G2910 Fragaria x ananassa HOM05D006226 ORTHO05D007738 3.2e-274 948.3 697 68.9
QL02p040023 Quercus lobata HOM05D006226 ORTHO05D007738 1.0e-240 837.0 708 60.9
Cfa003249 Carpinus fangiana HOM05D006226 ORTHO05D007738 5.9e-236 821.2 704 61.5
CiPaw.03G218400 Carya illinoinensis HOM05D006226 ORTHO05D007738 1.0e-235 820.5 669 64.1
Ciclev10007624m.g Citrus clementina HOM05D006226 ORTHO05D007738 2.0e-231 806.2 708 59.9
CANSAT56G2062 Cannabis sativa HOM05D006226 ORTHO05D007738 1.7e-230 803.1 703 60.6
GSVIVG01015381001 Vitis vinifera HOM05D006226 ORTHO05D007738 2.4e-229 799.3 668 61.7
FAN28G0796 Fragaria x ananassa HOM05D006226 ORTHO05D007738 9.1e-229 797.3 621 66.0
ClCG06G008620 Citrullus lanatus HOM05D006226 ORTHO05D007738 8.2e-222 774.2 717 54.5
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 2.6e-220 769.2 704 57.2
MELO3C024624.2 Cucumis melo HOM05D006226 ORTHO05D007738 2.0e-215 753.1 712 54.4
Glyma.07G085400 Glycine max HOM05D006226 ORTHO05D007738 2.6e-215 752.7 710 56.9
COL.COLO4_34848 Corchorus olitorius HOM05D006226 ORTHO05D007738 3.3e-215 752.3 665 58.3
Sabra18G0068600 Salix brachista HOM05D006226 ORTHO05D007738 3.3e-215 752.3 707 57.3
Lj2g0027193 Lotus japonicus HOM05D006226 ORTHO05D007738 1.4e-213 746.9 710 56.5
Manes.16G114900 Manihot esculenta HOM05D006226 ORTHO05D007738 2.4e-213 746.1 716 56.8
Glyma.09G191500 Glycine max HOM05D006226 ORTHO05D007738 1.6e-212 743.4 712 57.0
Sed0016798 Sechium edule HOM05D006226 ORTHO05D007738 3.5e-212 742.3 667 56.7
Phvul.004G164600 Phaseolus vulgaris HOM05D006226 ORTHO05D007738 8.5e-211 737.6 646 59.1
Medtr6g087530 Medicago truncatula HOM05D006226 ORTHO05D007738 1.5e-210 736.9 712 55.5
Rhsim01G0096900 Rhododendron simsii HOM05D006226 ORTHO05D007738 2.5e-210 736.1 710 56.8
Gorai.009G025300 Gossypium raimondii HOM05D006226 ORTHO05D007738 1.6e-209 733.4 713 55.0
Dinv36642 Davidia involucrata HOM05D006226 ORTHO05D007738 2.3e-208 729.6 616 61.5
VMungo0464G1421 Vigna mungo HOM05D006226 ORTHO05D007738 2.3e-208 729.6 703 55.6
Psat1g043440 Pisum sativum HOM05D006226 ORTHO05D007738 6.8e-208 728.0 673 56.0
TPR.G10046 Trifolium pratense HOM05D006226 ORTHO05D007738 7.0e-205 718.0 646 57.0
arahy.Tifrunner.gnm1.ann1.9IQ1SY Arachis hypogaea HOM05D006226 ORTHO05D007738 4.5e-204 715.3 711 54.4
arahy.Tifrunner.gnm1.ann1.ZKYF3I Arachis hypogaea HOM05D006226 ORTHO05D007738 4.5e-204 715.3 711 54.6
Potri.018G081500 Populus trichocarpa HOM05D006226 ORTHO05D007738 2.8e-201 706.1 713 54.7
Eucgr.C01033 Eucalyptus grandis HOM05D006226 ORTHO05D007738 4.0e-200 702.2 634 56.6
Aqoxy7G03848 Aquilegia oxysepala HOM05D006226 ORTHO05D007738 6.3e-198 694.9 669 54.9
vmacro20706 Vaccinium macrocarpon HOM05D006226 ORTHO05D007738 1.1e-197 694.1 791 50.1
Gohir.A05G023700 Gossypium hirsutum HOM05D006226 ORTHO05D007738 2.0e-196 689.9 712 52.1
PSO210G1415 Papaver somniferum HOM05D006226 ORTHO05D007738 1.7e-195 686.8 669 55.2
PSO210G0226 Papaver somniferum HOM05D006226 ORTHO05D007738 5.0e-195 685.3 664 55.1
Sc16g0007880 Simmondsia chinensis HOM05D006226 ORTHO05D007738 3.3e-194 682.6 671 54.4
Cpa.g.sc23.97 Carica papaya HOM05D006226 ORTHO05D007738 2.3e-192 676.4 615 58.7
Lj7C652G7 Lonicera japonica HOM05D006226 ORTHO05D007738 8.9e-192 674.5 650 54.5
PGR142G1694 Punica granatum HOM05D006226 ORTHO05D007738 5.8e-191 671.8 701 53.8
AUR62010999 Chenopodium quinoa HOM05D006226 ORTHO05D007738 3.7e-190 669.1 665 54.3
Cc06_g09770 Coffea canephora HOM05D006226 ORTHO05D007738 3.2e-189 666.0 680 52.6
Nitab4.5_0004070g0080 Nicotiana tabacum HOM05D006226 ORTHO05D007738 5.4e-189 665.2 715 51.7
PGSC0003DMG400026545 Solanum tuberosum HOM05D006226 ORTHO05D007738 1.1e-186 657.5 645 54.4
AL3G40100 Arabidopsis lyrata HOM05D006226 ORTHO05D007738 4.3e-186 655.6 634 54.3
AT3G24560 Arabidopsis thaliana HOM05D006226 ORTHO05D007738 7.3e-186 654.8 711 51.3
Sopen11g026750 Solanum pennellii HOM05D006226 ORTHO05D007738 7.3e-186 654.8 696 52.3
AUR62021510 Chenopodium quinoa HOM05D006226 ORTHO05D007738 1.5e-183 647.1 668 52.5
THA.LOC104808766 Tarenaya hassleriana HOM05D006226 ORTHO05D007738 1.3e-182 644.0 701 49.4
CAN.G644.14 Capsicum annuum HOM05D006226 ORTHO05D007738 3.7e-182 642.5 709 50.5
Carub.0003s2495 Capsella rubella HOM05D006226 ORTHO05D007738 1.1e-181 641.0 648 52.3
Sp3g22350 Schrenkiella parvula HOM05D006226 ORTHO05D007738 1.1e-181 641.0 653 51.9
HanXRQChr12g0354991 Helianthus annuus HOM05D006226 ORTHO05D007738 2.1e-180 636.7 663 52.0
Actinidia32679 Actinidia chinensis HOM05D006226 ORTHO05D007738 1.5e-178 630.6 616 55.2
BcaB06g26659 Brassica carinata HOM05D006226 ORTHO05D007738 4.3e-178 629.0 648 51.5
DCAR_002532 Daucus carota HOM05D006226 ORTHO05D007738 1.2e-177 627.5 639 52.3
CARHR100790 Cardamine hirsuta HOM05D006226 ORTHO05D007738 1.6e-177 627.1 708 49.9
BraA07t28567Z Brassica rapa HOM05D006226 ORTHO05D007738 2.1e-177 626.7 648 50.9
C07p11670 Brassica napus HOM05D006226 ORTHO05D007738 2.8e-177 626.3 648 51.2
BcaC06g35722 Brassica carinata HOM05D006226 ORTHO05D007738 3.6e-177 625.9 647 51.3
BolC7t41639H Brassica oleracea HOM05D006226 ORTHO05D007738 3.6e-177 625.9 647 51.3
Nitab4.5_0006735g0020 Nicotiana tabacum HOM05D006226 ORTHO05D007738 4.0e-176 622.5 704 48.9
A07p07760 Brassica napus HOM05D006226 ORTHO05D007738 1.9e-173 613.6 670 49.4
Thhalv10002431m.g Eutrema salsugineum HOM05D006226 ORTHO05D007738 1.9e-173 613.6 699 48.4
SalBow6G3053 Salvia bowleyana HOM05D006226 ORTHO05D007738 1.7e-171 607.1 646 50.3
CsaV3_1G025440 Cucumis sativus L. HOM05D006226 ORTHO05D007738 1.5e-170 604.0 527 56.0
ECA233G1203 Erigeron canadensis HOM05D006226 ORTHO05D007738 4.7e-169 599.0 635 51.7
Migut.C00317 Erythranthe guttata HOM05D006226 ORTHO05D007738 1.2e-164 584.3 660 49.4
Migut.G00900 Erythranthe guttata HOM05D006226 ORTHO05D007738 3.0e-163 579.7 647 49.3
Aa31sc29G50 Aethionema arabicum HOM05D006226 ORTHO05D007738 1.9e-162 577.0 660 47.7
Lsat_1_v5_gn_8_3640 Lactuca sativa HOM05D006226 ORTHO05D007738 6.9e-160 568.5 678 48.2
Thecc.09G109000 Theobroma cacao HOM05D006226 ORTHO05D007738 2.6e-159 566.6 490 60.4
Atru.chr7.1363 Acer truncatum HOM05D006226 ORTHO05D007738 2.2e-158 563.5 476 62.0
CANSAT56G4481 Cannabis sativa HOM05D006226 ORTHO05D007738 1.1e-157 561.2 503 60.0
Migut.K01516 Erythranthe guttata HOM05D006226 ORTHO05D007738 4.2e-157 559.3 663 48.1
Gohir.D05G025200 Gossypium hirsutum HOM05D006226 ORTHO05D007738 3.5e-156 556.2 531 54.4
EL10Ac8g18501 Beta vulgaris HOM05D006226 ORTHO05D007738 5.8e-151 538.9 647 49.0
Hund09200 Selenicereus undatus HOM05D006226 ORTHO05D007738 6.4e-150 535.4 641 47.6
SGA_v2.0_scaffold57G20229 Striga asiatica HOM05D006226 ORTHO05D007738 3.2e-149 533.1 730 43.3
Zm00001eb237720 Zea mays HOM05D006226 ORTHO05D007738 6.4e-142 508.8 695 42.3
CSS0010508 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 1.1e-141 508.1 598 50.5
CSS0044649 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 6.9e-136 488.8 598 49.2
Ah.14g081980 Amaranthus hybridus HOM05D006226 ORTHO05D007738 1.1e-133 481.5 527 49.9
Nn8g39152 Nelumbo nucifera HOM05D006226 ORTHO05D007738 1.1e-130 471.5 345 67.0
MBI04_g22018_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 1.1e-128 464.9 375 63.2
Haze_25736 Corylus avellana HOM05D006226 ORTHO05D007738 5.3e-128 462.6 309 72.2
Oeu002240.1 Olea europaea HOM05D006226 ORTHO05D007738 3.8e-126 456.4 493 48.7
Lalb_Chr06g0174391 Lupinus albus HOM05D006226 ORTHO05D007738 4.2e-117 426.4 311 67.8
unitig_748.g7367 Utricularia gibba HOM05D006226 ORTHO05D007738 1.7e-102 377.9 697 37.3
ATR0315G013 Amborella trichopoda HOM05D006226 ORTHO05D007738 4.2e-101 373.2 306 59.2
Hma1.2p1_1463F.1_g285100 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 1.0e-99 368.6 410 50.5
Solyc11g067040.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 9.7e-98 362.1 331 56.5
AagrBONN_evm.TU.Sc2ySwM_368.2586 Anthoceros agrestis HOM05D006226 ORTHO05D007738 1.8e-96 357.8 658 35.6
Peaxi162Scf01284g00025 Petunia axillaris HOM05D006226 ORTHO05D007738 8.5e-94 349.0 327 56.9
Mapoly0045s0077 Marchantia polymorpha HOM05D006226 ORTHO05D007738 7.0e-88 329.3 705 33.5
Solyc11g067030.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 5.0e-78 296.6 374 45.2
Peaxi162Scf01284g00019 Petunia axillaris HOM05D006226 ORTHO05D007738 1.5e-77 295.0 374 44.4
Lalb_Chr06g0174401 Lupinus albus HOM05D006226 ORTHO05D007738 1.2e-76 292.0 325 48.6
SMO170G0077 Selaginella moellendorffii HOM05D006226 ORTHO05D007738 9.2e-72 275.8 646 32.7
MBI04_g29967_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 9.5e-69 265.8 387 44.7
Hma1.2p1_1463F.1_g285110 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 1.5e-66 258.5 317 47.6
ECA234G2375 Erigeron canadensis HOM05D006226 ORTHO05D007738 2.0e-66 258.1 612 30.4
Pp3c5_3840 Physcomitrium patens HOM05D006226 ORTHO05D007738 4.4e-66 256.9 556 31.8
ATR0315G018 Amborella trichopoda HOM05D006226 ORTHO05D007738 6.6e-54 216.5 332 41.0
CDE04G3650 Ceratophyllum demersum HOM05D001758 ORTHO05D005969 1.8e-51 208.4 168 58.3
CANSAT56G3567 Cannabis sativa HOM05D006226 ORTHO05D007738 1.4e-48 198.7 176 59.1
Nitab4.5_0004070g0110 Nicotiana tabacum HOM05D006226 ORTHO05D007738 2.1e-39 168.3 261 39.1
SGA_v2.0_scaffold3110G54276 Striga asiatica HOM05D006226 ORTHO05D007738 1.6e-36 158.7 120 63.3
SGA_v2.0_scaffold88G27188 Striga asiatica HOM05D006226 ORTHO05D007738 1.6e-36 158.7 213 40.8
CBR_g23439 Chara braunii HOM05D000019 ORTHO05D000002 4.8e-36 157.1 240 38.8
Os02g0266500 Oryza sativa ssp. japonica HOM05D006226 ORTHO05D007738 2.2e-33 148.3 132 55.3
Nitab4.5_0004070g0120 Nicotiana tabacum HOM05D006226 ORTHO05D007738 1.5e-29 135.6 191 44.0
SEGI_09304 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 1.6e-28 132.1 140 42.9
HanXRQChr00c0062g0571541 Helianthus annuus HOM05D006226 ORTHO05D007738 1.1e-24 119.4 176 40.9
Lsat_1_v5_gn_4_168221 Lactuca sativa HOM05D006226 ORTHO05D007738 2.5e-21 108.2 166 39.8
HPP92_005262 Vanilla planifolia HOM05D006226 ORTHO05D007738 1.1e-19 102.8 77 66.2
SEGI_25817 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 1.8e-19 102.1 78 57.7
Actinidia07412 Actinidia chinensis HOM05D006226 ORTHO05D007738 8.7e-14 83.2 50 74.0
CDE04G0435 Ceratophyllum demersum HOM05D006226 ORTHO05D007738 5.7e-13 80.5 164 34.1
HanXRQChr00c0062g0571551 Helianthus annuus HOM05D006226 ORTHO05D007738 9.7e-13 79.7 114 42.1
Medtr6g087540 Medicago truncatula HOM05D006226 ORTHO05D007738 1.8e-11 75.5 147 34.7
MCO09G126 Micromonas commoda HOM05D006226 ORTHO05D007738 2.0e-10 72.0 210 27.6
PRCOL_00000419 Prasinoderma coloniale HOM05D006226 ORTHO05D023487 4.2e-08 64.3 245 26.5


User provided reference genes

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