Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 0.0e+00 3762.6 2051 100.0
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 0.0e+00 2611.6 2120 73.4
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 0.0e+00 1795.4 2043 57.6
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 0.0e+00 1714.5 2131 54.8
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 0.0e+00 1707.6 2132 55.4
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 0.0e+00 1701.0 2131 54.7
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 0.0e+00 1679.5 2121 55.0
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 0.0e+00 1444.9 1425 61.4
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 0.0e+00 1235.3 2100 45.0
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 0.0e+00 1227.6 2110 45.0
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 0.0e+00 1221.5 2039 46.1
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 0.0e+00 1186.0 2140 44.4
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 5.7e-295 1018.8 2015 41.5
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 2.6e-276 956.8 2123 39.9
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 4.2e-274 949.5 2104 40.0
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 1.4e-272 944.5 2119 39.5
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 1.5e-266 924.5 2106 39.8
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 5.3e-261 906.0 2089 39.8
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 3.5e-260 903.3 2109 38.7
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.1e-258 898.3 1789 41.6
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 3.8e-251 873.2 2127 38.5
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 1.2e-247 861.7 2148 37.5
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 1.7e-243 847.8 1909 38.2
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 1.3e-235 821.6 1943 38.5
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.2e-231 808.5 2079 36.7
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 7.0e-229 799.3 2178 34.4
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 6.0e-228 796.2 2156 36.1
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 3.0e-227 793.9 2163 36.2
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 7.1e-221 772.7 2166 35.8
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 9.2e-221 772.3 2136 36.0
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 8.1e-217 759.2 2149 36.4
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 1.1e-216 758.8 1249 45.4
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 7.8e-212 742.7 1909 38.1
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.3e-211 741.9 2083 36.3
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 6.2e-209 733.0 2131 36.6
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 1.4e-208 731.9 1898 36.8
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 8.4e-206 722.6 2075 36.1
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 8.4e-206 722.6 2073 35.7
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 1.9e-202 711.4 2037 34.7
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 2.5e-202 711.1 2041 35.5
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 3.3e-202 710.7 2076 35.0
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 3.9e-195 687.2 790 58.6
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 6.2e-193 679.9 2217 33.8
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 1.0e-187 662.5 2033 33.6
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 6.7e-187 659.8 820 53.9
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.5e-183 648.7 1932 35.4
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 6.5e-182 643.3 1947 34.7
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 5.5e-181 640.2 1945 35.1
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 6.0e-180 636.7 793 54.2
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 6.0e-180 636.7 1903 34.3
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 4.8e-177 627.1 969 48.3
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 6.3e-177 626.7 1909 34.8
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 5.1e-171 607.1 1806 34.2
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 6.7e-171 606.7 731 56.1
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 5.0e-166 590.5 1625 36.1
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 4.1e-160 570.9 1833 32.8
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 2.1e-156 558.5 2127 32.1
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 1.8e-155 555.4 986 45.8
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 9.1e-152 543.1 1230 40.0
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 1.2e-148 532.7 2052 32.8
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 1.4e-147 529.3 1158 38.9
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 2.3e-147 528.5 2147 31.1
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 8.8e-147 526.6 2011 32.5
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 4.4e-146 524.2 972 44.0
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 3.7e-145 521.2 2152 31.5
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 1.7e-142 512.3 800 45.0
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 2.2e-142 511.9 800 45.0
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 1.6e-140 505.8 789 46.6
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 3.0e-139 501.5 788 46.2
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 2.0e-138 498.8 780 47.8
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 6.3e-137 493.8 925 44.0
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 8.3e-137 493.4 477 62.9
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 1.8e-136 492.3 971 43.0
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 1.6e-135 489.2 773 45.5
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 4.5e-135 487.6 2098 31.5
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 7.7e-135 486.9 2031 28.9
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 1.7e-134 485.7 2026 30.8
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 2.9e-134 485.0 768 44.7
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 1.2e-132 479.6 768 44.1
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 1.0e-131 476.5 876 41.4
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 1.0e-131 476.5 806 45.7
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 2.3e-131 475.3 1268 37.7
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 2.6e-130 471.9 768 43.8
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 2.6e-130 471.9 768 43.8
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 2.6e-130 471.9 1649 33.8
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 4.1e-128 464.5 2161 30.0
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 4.5e-127 461.1 1939 30.5
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 1.5e-125 456.1 931 41.1
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 2.5e-125 455.3 1934 28.9
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 5.2e-123 447.6 796 45.2
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 4.9e-121 441.0 630 45.9
MD08G1160200 Malus domestica HOM05D000237 ORTHO05D006530 4.1e-120 438.0 301 79.1
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 4.1e-120 438.0 828 43.5
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 3.5e-119 434.9 800 44.8
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 3.9e-118 431.4 1860 30.8
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 6.2e-116 424.1 820 42.7
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 2.0e-114 419.1 660 42.3
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 3.7e-113 414.8 736 45.5
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 2.0e-111 409.1 495 55.2
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 2.7e-111 408.7 1081 37.3
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 2.6e-106 392.1 1898 28.0
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 5.8e-106 391.0 910 40.2
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 4.1e-104 384.8 804 40.4
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 1.7e-102 379.4 783 41.5
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 3.0e-102 378.6 495 48.5
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 1.5e-101 376.3 1019 36.0
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.1e-96 360.1 712 38.8
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 7.3e-93 347.4 887 38.1
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.9e-77 296.2 1085 32.4
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 2.4e-75 289.3 323 60.4
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 1.1e-72 280.4 822 35.8
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 1.1e-69 270.4 688 33.7
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.8e-68 265.8 256 55.5
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 1.4e-59 236.9 277 61.0
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 5.9e-58 231.5 830 29.6
MD08G1160100 Malus domestica HOM05D000237 ORTHO05D006530 7.4e-53 214.5 139 86.3
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 2.0e-50 206.5 1683 26.1
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 5.9e-50 204.9 521 39.3
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 2.2e-49 203.0 225 51.1
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 1.1e-45 190.7 221 49.3
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 7.4e-45 188.0 494 34.6
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 7.7e-42 177.9 735 29.4
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 1.6e-39 170.2 1535 25.5
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 3.6e-39 169.1 1727 24.7
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 1.8e-38 166.8 141 62.4
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 8.2e-36 157.9 206 63.1
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 5.9e-34 151.8 105 71.4
Dinv14698 Davidia involucrata HOM05D000237 ORTHO05D006530 3.2e-32 146.0 1092 27.5
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 7.5e-29 134.8 368 34.8
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 2.4e-27 129.8 580 32.1
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 3.1e-27 129.4 142 51.4
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 1.7e-20 107.1 84 70.2
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 3.7e-20 105.9 247 34.8
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 1.8e-19 103.6 140 44.3
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 7.2e-16 91.7 772 25.9
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.2e-13 84.3 107 43.0
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 2.6e-13 83.2 132 41.7
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 4.5e-10 72.4 143 35.7
Lj4P681T20 Lonicera japonica HOM05D000237 ORTHO05D006530 5.9e-10 72.0 137 37.2
Oeu047175.1 Olea europaea HOM05D000237 ORTHO05D006530 1.6e-07 63.9 140 32.9
SEGI_15365 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 1.6e-07 63.9 505 25.0


User provided reference genes

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