Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1780.0 964 100.0
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1592.4 967 90.7
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 0.0e+00 1415.2 971 82.1
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 0.0e+00 1282.3 947 72.5
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 0.0e+00 1268.1 974 70.4
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1260.4 963 73.1
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 0.0e+00 1235.7 1052 65.5
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 0.0e+00 1234.2 967 72.1
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 0.0e+00 1219.9 973 71.1
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1219.1 976 70.9
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1219.1 976 71.0
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 0.0e+00 1218.4 978 68.4
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1213.0 935 72.5
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 0.0e+00 1207.2 962 66.2
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 0.0e+00 1206.8 954 69.2
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 0.0e+00 1203.0 986 66.4
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 0.0e+00 1202.6 914 72.5
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 0.0e+00 1194.9 982 66.3
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 0.0e+00 1194.9 975 66.9
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 0.0e+00 1194.5 963 69.2
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 0.0e+00 1187.6 979 66.8
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 0.0e+00 1172.9 984 64.0
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1171.0 974 65.7
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1166.0 974 65.6
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 0.0e+00 1156.4 963 69.1
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 0.0e+00 1155.6 966 68.1
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 0.0e+00 1155.2 962 66.9
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1148.3 963 65.7
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 0.0e+00 1144.0 960 68.2
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 0.0e+00 1140.9 965 63.7
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1140.9 894 68.1
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 0.0e+00 1139.4 919 68.4
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1139.0 978 65.3
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 0.0e+00 1138.6 957 67.3
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 0.0e+00 1138.3 967 64.3
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1133.2 962 66.8
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1129.4 894 68.2
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 0.0e+00 1128.2 961 64.2
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 0.0e+00 1126.3 965 63.9
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 0.0e+00 1123.2 931 64.9
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 0.0e+00 1122.8 939 64.4
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1119.0 965 66.3
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 0.0e+00 1119.0 892 66.7
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 0.0e+00 1116.3 978 65.7
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 0.0e+00 1113.6 900 70.4
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 0.0e+00 1112.8 979 64.7
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 0.0e+00 1112.8 979 65.2
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 0.0e+00 1110.9 982 64.3
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 0.0e+00 1110.1 960 66.0
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 0.0e+00 1107.0 969 64.4
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 0.0e+00 1106.7 979 65.3
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 0.0e+00 1100.9 982 63.4
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 0.0e+00 1100.5 990 63.2
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 0.0e+00 1098.6 962 65.9
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 0.0e+00 1098.2 976 62.8
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 0.0e+00 1096.6 994 62.7
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 0.0e+00 1095.9 948 65.3
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 0.0e+00 1094.7 974 64.2
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 0.0e+00 1083.9 995 61.4
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 0.0e+00 1081.2 965 62.0
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 0.0e+00 1080.5 973 64.2
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 0.0e+00 1077.4 976 62.4
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 0.0e+00 1077.4 958 60.9
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 6.6e-312 1074.3 984 61.5
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 1.3e-310 1069.7 970 63.9
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 5.0e-310 1067.8 951 63.7
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 6.5e-310 1067.4 1004 60.2
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 8.5e-310 1067.0 903 64.5
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 8.5e-310 1067.0 960 65.2
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 3.6e-308 1061.6 962 62.5
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 1.5e-306 1056.2 882 62.6
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 7.0e-304 1047.3 923 65.3
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 1.2e-300 1036.6 970 62.5
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 3.6e-300 1035.0 977 63.4
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 3.5e-295 1018.5 961 58.8
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 3.8e-294 1015.0 964 61.3
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 6.1e-292 1007.7 970 61.3
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 5.9e-287 991.1 904 63.5
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 1.0e-286 990.3 826 64.4
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 5.0e-286 988.0 971 57.6
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 1.4e-283 979.9 966 56.9
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 2.3e-278 962.6 840 64.4
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 4.0e-275 951.8 974 58.4
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 2.2e-273 946.0 970 58.4
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 4.1e-272 941.8 971 57.4
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 8.6e-270 934.1 969 57.8
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 8.1e-268 927.5 974 59.4
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 2.6e-266 922.5 969 57.8
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 2.6e-266 922.5 966 56.7
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 2.6e-266 922.5 966 56.7
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 5.8e-266 921.4 974 56.6
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 9.8e-266 920.6 999 53.9
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 8.6e-262 907.5 978 56.4
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 4.7e-260 901.7 972 55.5
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 2.6e-258 896.0 969 55.2
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 2.6e-258 896.0 973 55.4
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 3.4e-258 895.6 969 55.4
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 1.3e-257 893.6 973 55.3
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 1.7e-254 883.2 966 54.8
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 2.1e-239 833.2 777 58.9
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 8.7e-238 827.8 817 58.1
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 9.0e-219 764.6 976 48.4
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 8.5e-193 678.3 606 67.2
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 3.5e-186 656.4 857 46.7
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 1.1e-171 608.2 983 43.6
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 5.6e-152 542.7 842 42.2
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 1.4e-150 538.1 509 58.5
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 1.4e-131 474.9 446 54.0
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 7.8e-130 469.2 822 36.9
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 8.1e-127 459.1 463 54.9
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 1.0e-84 319.3 342 55.3
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 2.5e-83 314.7 985 29.4
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 1.8e-81 308.5 788 29.3
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 1.3e-71 275.8 878 26.3
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 2.3e-60 238.4 442 40.0
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 3.3e-59 234.6 306 45.1
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 7.5e-56 223.4 245 48.6
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 1.7e-52 212.2 172 62.8
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 1.6e-29 136.0 408 32.1
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 5.2e-25 120.9 107 57.9
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 1.4e-22 112.8 67 74.6
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 3.5e-21 108.2 90 62.2
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 1.0e-20 106.7 90 61.1
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 1.4e-17 96.3 66 71.2
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 3.1e-17 95.1 98 54.1
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 9.0e-17 93.6 90 57.8
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 3.4e-16 91.7 108 50.9
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 2.9e-15 88.6 158 38.0
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 2.1e-10 72.4 37 89.2
Hma1.2p1_0733F.1_g210250 Hydrangea macrophylla HOM05D005717 ORTHO05D007221 3.1e-09 68.6 59 67.8
SalBow2G0244 Salvia bowleyana HOM05D004669 ORTHO05D005767 4.5e-08 64.7 177 27.7
ATR0705G066 Amborella trichopoda HOM05D004669 ORTHO05D005767 4.9e-07 61.2 180 25.6
Duzib192G0063 Durio zibethinus HOM05D004669 ORTHO05D005767 1.1e-06 60.1 180 25.6
Thecc.06G074100 Theobroma cacao HOM05D004669 ORTHO05D005767 1.4e-06 59.7 180 26.1
Sc12g0008880 Simmondsia chinensis HOM05D004669 ORTHO05D005767 3.2e-06 58.5 183 24.6
Ciclev10024861m.g Citrus clementina HOM05D004669 ORTHO05D005767 4.2e-06 58.2 177 26.6
Eucgr.J03040 Eucalyptus grandis HOM05D004669 ORTHO05D005767 4.2e-06 58.2 183 25.1
MBI15_g28715_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 4.2e-06 58.2 52 59.6
TAR636G0609 Trochodendron aralioides HOM05D004669 ORTHO05D005767 7.1e-06 57.4 180 25.0
Gohir.A09G084900 Gossypium hirsutum HOM05D004669 ORTHO05D005767 9.3e-06 57.0 180 26.1


User provided reference genes

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