Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1133100 Malus domestica HOM05D005266 ORTHO05D006416 2.8e-157 558.5 276 100.0
MD06G1103700 Malus domestica HOM05D005266 ORTHO05D006416 2.0e-126 456.1 307 78.5
MD14G1122800 Malus domestica HOM05D005266 ORTHO05D006416 3.4e-118 428.7 307 72.3
Prupe.5G116300 Prunus persica HOM05D005266 ORTHO05D006416 3.4e-118 428.7 307 73.0
GSVIVG01019509001 Vitis vinifera HOM05D005266 ORTHO05D006416 6.0e-107 391.3 308 65.9
RcHm_v2.0_Chr7g0195271 Rosa chinensis HOM05D005266 ORTHO05D006416 1.0e-106 390.6 307 67.4
Cfa012815 Carpinus fangiana HOM05D005266 ORTHO05D006416 6.2e-104 381.3 309 64.7
FvH4_5g04211 Fragaria vesca HOM05D005266 ORTHO05D006416 1.1e-103 380.6 307 64.8
FAN04G0732 Fragaria x ananassa HOM05D005266 ORTHO05D006416 1.4e-103 380.2 307 64.5
CSS0021201 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 4.0e-103 378.6 306 64.7
CSS0021291 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 2.6e-102 375.9 307 64.5
Rhsim07G0083300 Rhododendron simsii HOM05D005266 ORTHO05D006416 7.5e-102 374.4 306 63.4
CiPaw.12G084500 Carya illinoinensis HOM05D005266 ORTHO05D006416 3.7e-101 372.1 307 63.8
vmacro13906 Vaccinium macrocarpon HOM05D005266 ORTHO05D006416 2.0e-99 366.3 306 61.8
Atru.chr9.2024 Acer truncatum HOM05D005266 ORTHO05D006416 2.7e-99 365.9 306 62.4
Haze_08644 Corylus avellana HOM05D005266 ORTHO05D006416 2.7e-99 365.9 337 59.1
Eucgr.D01715 Eucalyptus grandis HOM05D005266 ORTHO05D006416 6.0e-99 364.8 306 61.1
Hma1.2p1_0952F.1_g241000 Hydrangea macrophylla HOM05D005266 ORTHO05D006416 8.6e-98 360.9 307 61.9
Manes.02G011800 Manihot esculenta HOM05D005266 ORTHO05D006416 1.1e-97 360.5 306 60.5
Atru.chr9.2034 Acer truncatum HOM05D005266 ORTHO05D006416 1.5e-97 360.1 306 61.4
Ciclev10021146m.g Citrus clementina HOM05D005266 ORTHO05D006416 2.5e-97 359.4 306 60.5
Duzib205G1998 Durio zibethinus HOM05D005266 ORTHO05D006416 2.5e-97 359.4 307 61.2
CANSAT21G1278 Cannabis sativa HOM05D005266 ORTHO05D006416 3.3e-97 359.0 306 62.1
Thecc.03G294500 Theobroma cacao HOM05D005266 ORTHO05D006416 4.3e-97 358.6 307 61.2
TWI60G1723 Tripterygium wilfordii HOM05D005266 ORTHO05D006416 4.3e-97 358.6 307 61.6
COL.COLO4_10665 Corchorus olitorius HOM05D005266 ORTHO05D006416 9.5e-97 357.5 307 60.9
Actinidia27330 Actinidia chinensis HOM05D005266 ORTHO05D006416 8.1e-96 354.4 307 60.3
Lj8C194T1 Lonicera japonica HOM05D005266 ORTHO05D006416 2.3e-95 352.8 306 59.5
Glyma.11G018300 Glycine max HOM05D005266 ORTHO05D006416 4.4e-94 348.6 307 59.6
Cpa.g.sc79.62 Carica papaya HOM05D005266 ORTHO05D006416 1.3e-93 347.1 307 60.3
Gohir.D12G236400 Gossypium hirsutum HOM05D005266 ORTHO05D006416 1.7e-93 346.7 306 58.5
FAN13G2918 Fragaria x ananassa HOM05D005266 ORTHO05D006416 4.9e-93 345.1 284 64.4
FAN18G4151 Fragaria x ananassa HOM05D005266 ORTHO05D006416 4.9e-93 345.1 284 64.4
Gorai.008G253100 Gossypium raimondii HOM05D005266 ORTHO05D006416 8.3e-93 344.4 306 58.2
Sabra03G0099600 Salix brachista HOM05D005266 ORTHO05D006416 8.3e-93 344.4 307 58.6
Aqoxy5G04165 Aquilegia oxysepala HOM05D005266 ORTHO05D006416 2.4e-92 342.8 306 57.5
FAN08G1599 Fragaria x ananassa HOM05D005266 ORTHO05D006416 2.4e-92 342.8 284 63.7
Gohir.A12G235200 Gossypium hirsutum HOM05D005266 ORTHO05D006416 2.4e-92 342.8 306 58.5
Sed0003958 Sechium edule HOM05D005266 ORTHO05D006416 3.2e-92 342.4 308 58.1
Glyma.01G224700 Glycine max HOM05D005266 ORTHO05D006416 4.1e-92 342.0 307 58.3
Cc08_g15880 Coffea canephora HOM05D005266 ORTHO05D006416 2.1e-91 339.7 306 57.5
TPR.G31703 Trifolium pratense HOM05D005266 ORTHO05D006416 2.1e-91 339.7 309 59.2
ClCG07G014940 Citrullus lanatus HOM05D005266 ORTHO05D006416 2.7e-91 339.3 308 59.1
PGR031G3352 Punica granatum HOM05D005266 ORTHO05D006416 2.7e-91 339.3 307 58.3
LjContig00312_ERROPOS870357g0017789 Lotus japonicus HOM05D005266 ORTHO05D006416 6.0e-91 338.2 307 60.3
Dinv38851 Davidia involucrata HOM05D005266 ORTHO05D006416 1.0e-90 337.4 280 62.5
Lj8A209T47 Lonicera japonica HOM05D005266 ORTHO05D006416 1.3e-90 337.0 331 54.4
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 1.3e-90 337.0 307 58.3
CsaV3_4G006470 Cucumis sativus L. HOM05D005266 ORTHO05D006416 2.3e-90 336.3 308 57.8
Phvul.002G163300 Phaseolus vulgaris HOM05D005266 ORTHO05D006416 3.9e-90 335.5 307 58.0
Potri.003G138300 Populus trichocarpa HOM05D005266 ORTHO05D006416 3.9e-90 335.5 307 57.7
MELO3C016280.2 Cucumis melo HOM05D005266 ORTHO05D006416 8.6e-90 334.3 308 57.8
MBI06_g35286_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 1.9e-89 333.2 293 58.7
arahy.Tifrunner.gnm1.ann1.B1IHLW Arachis hypogaea HOM05D005266 ORTHO05D006416 3.3e-89 332.4 307 57.3
Ca_20295_v3 Cicer arietinum L. HOM05D005266 ORTHO05D006416 5.6e-89 331.6 292 59.9
arahy.Tifrunner.gnm1.ann1.J0IMEJ Arachis hypogaea HOM05D005266 ORTHO05D006416 7.3e-89 331.3 307 57.0
Medtr6g072020 Medicago truncatula HOM05D005266 ORTHO05D006416 7.3e-89 331.3 309 57.3
Nitab4.5_0007099g0010 Nicotiana tabacum HOM05D005266 ORTHO05D006416 2.8e-88 329.3 306 56.2
Sopen08g030390 Solanum pennellii HOM05D005266 ORTHO05D006416 1.1e-87 327.4 306 54.9
Lalb_Chr05g0211611 Lupinus albus HOM05D005266 ORTHO05D006416 3.1e-87 325.9 307 57.3
Nn1g01825 Nelumbo nucifera HOM05D005266 ORTHO05D006416 5.2e-87 325.1 283 60.8
AL2G10520 Arabidopsis lyrata HOM05D005266 ORTHO05D006416 1.5e-86 323.6 306 53.3
Migut.A00673 Erythranthe guttata HOM05D005266 ORTHO05D006416 2.6e-86 322.8 308 56.5
Nitab4.5_0000223g0310 Nicotiana tabacum HOM05D005266 ORTHO05D006416 4.4e-86 322.0 306 55.9
AT1G64350 Arabidopsis thaliana HOM05D005266 ORTHO05D006416 1.3e-85 320.5 306 53.6
Hund14232 Selenicereus undatus HOM05D005266 ORTHO05D006416 1.3e-85 320.5 304 56.6
A09p14760 Brassica napus HOM05D005266 ORTHO05D006416 2.9e-85 319.3 306 54.6
PSO384G5109 Papaver somniferum HOM05D005266 ORTHO05D006416 2.9e-85 319.3 309 55.7
Solyc08g082100.3 Solanum lycopersicum HOM05D005266 ORTHO05D006416 3.8e-85 318.9 306 54.6
Psat1g124400 Pisum sativum HOM05D005266 ORTHO05D006416 4.9e-85 318.5 307 56.0
TAR307G0004 Trochodendron aralioides HOM05D005266 ORTHO05D006416 6.4e-85 318.2 307 57.0
PSO135G0479 Papaver somniferum HOM05D005266 ORTHO05D006416 8.4e-85 317.8 309 55.0
C09p17870 Brassica napus HOM05D005266 ORTHO05D006416 1.9e-84 316.6 305 54.8
BolC9t54684H Brassica oleracea HOM05D005266 ORTHO05D006416 1.9e-84 316.6 305 54.8
AUR62010819 Chenopodium quinoa HOM05D005266 ORTHO05D006416 2.4e-84 316.2 307 56.0
Carub.0002s0044 Capsella rubella HOM05D005266 ORTHO05D006416 3.2e-84 315.8 309 52.4
BcaC04g22562 Brassica carinata HOM05D005266 ORTHO05D006416 5.4e-84 315.1 305 54.8
CARHR046620 Cardamine hirsuta HOM05D005266 ORTHO05D006416 1.2e-83 313.9 309 52.4
BraA09t37122Z Brassica rapa HOM05D005266 ORTHO05D006416 1.6e-83 313.5 305 54.4
Thhalv10023589m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 2.7e-83 312.8 308 53.9
Peaxi162Scf00074g01141 Petunia axillaris HOM05D005266 ORTHO05D006416 3.5e-83 312.4 288 56.9
BcaB07g31457 Brassica carinata HOM05D005266 ORTHO05D006416 6.0e-83 311.6 305 54.4
THA.LOC104823610 Tarenaya hassleriana HOM05D005266 ORTHO05D006416 1.3e-82 310.5 309 52.8
Ah.12g052360 Amaranthus hybridus HOM05D005266 ORTHO05D006416 1.7e-82 310.1 306 53.9
MSTRG.11934 Avicennia marina HOM05D005266 ORTHO05D006416 2.3e-82 309.7 306 53.9
Lsat_1_v5_gn_6_84320 Lactuca sativa HOM05D005266 ORTHO05D006416 3.9e-82 308.9 306 52.6
SalBow1G7588 Salvia bowleyana HOM05D005266 ORTHO05D006416 6.6e-82 308.1 306 52.6
SalBow1G3663 Salvia bowleyana HOM05D005266 ORTHO05D006416 8.7e-82 307.8 306 52.6
PGSC0003DMG400012295 Solanum tuberosum HOM05D005266 ORTHO05D006416 1.9e-81 306.6 344 49.1
Sp2g00410 Schrenkiella parvula HOM05D005266 ORTHO05D006416 2.5e-81 306.2 309 52.8
HanXRQChr11g0348461 Helianthus annuus HOM05D005266 ORTHO05D006416 7.3e-81 304.7 306 53.3
ECA240G2034 Erigeron canadensis HOM05D005266 ORTHO05D006416 4.7e-80 302.0 308 52.9
HanXRQChr03g0085181 Helianthus annuus HOM05D005266 ORTHO05D006416 1.8e-79 300.1 306 52.0
SGA_v2.0_scaffold305G47940 Striga asiatica HOM05D005266 ORTHO05D006416 6.9e-79 298.1 350 48.0
Sc01g0010180 Simmondsia chinensis HOM05D005266 ORTHO05D006416 5.8e-78 295.0 283 54.8
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 4.9e-77 292.0 307 50.2
Nn3g19065 Nelumbo nucifera HOM05D005266 ORTHO05D006416 3.9e-74 282.3 288 51.7
AUR62019818 Chenopodium quinoa HOM05D005266 ORTHO05D006416 1.6e-72 276.9 235 62.1
Zm00001eb159590 Zea mays HOM05D005266 ORTHO05D006416 8.1e-72 274.6 305 46.9
Os01g0620100 Oryza sativa ssp. japonica HOM05D005266 ORTHO05D006416 1.1e-71 274.2 305 47.2
EL10Ac5g12895 Beta vulgaris HOM05D005266 ORTHO05D006416 5.8e-70 268.5 279 52.7
DCAR_027714 Daucus carota HOM05D005266 ORTHO05D006416 1.6e-67 260.4 233 57.1
TAR375G1085 Trochodendron aralioides HOM05D005266 ORTHO05D006416 6.7e-66 255.0 227 57.7
CDE02G0379 Ceratophyllum demersum HOM05D005266 ORTHO05D006416 1.6e-64 250.4 210 59.0
SEGI_13107 Sequoiadendron giganteum HOM05D005266 ORTHO05D006416 2.4e-63 246.5 306 42.8
Oeu061096.1 Olea europaea HOM05D005266 ORTHO05D000397 4.5e-62 242.3 192 62.0
HPP92_004677 Vanilla planifolia HOM05D005266 ORTHO05D006416 1.0e-58 231.1 290 45.9
ATR0589G095 Amborella trichopoda HOM05D005266 ORTHO05D006416 1.5e-57 227.3 194 57.7
MD15G1317600 Malus domestica HOM05D005266 ORTHO05D006416 1.6e-48 197.2 153 70.6
unitig_899.g15005 Utricularia gibba HOM05D005266 ORTHO05D006416 4.8e-48 195.7 294 39.1
MD06G1116200 Malus domestica HOM05D005266 ORTHO05D006416 5.1e-42 175.6 183 57.4
Mapoly0117s0010 Marchantia polymorpha HOM05D005266 ORTHO05D006416 3.3e-41 172.9 302 34.4
Pp3c5_28960 Physcomitrium patens HOM05D005266 ORTHO05D006416 5.3e-39 165.6 303 34.3
AagrBONN_evm.TU.Sc2ySwM_344.5454 Anthoceros agrestis HOM05D005266 ORTHO05D006416 2.9e-37 159.8 300 32.0
HanXRQChr03g0066311 Helianthus annuus HOM05D005266 ORTHO05D006416 9.4e-36 154.8 141 55.3
SMO147G0195 Selaginella moellendorffii HOM05D005266 ORTHO05D006416 5.7e-33 145.6 301 32.6
CSS0028893 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 1.2e-27 127.9 73 80.8
MD17G1262800 Malus domestica HOM05D005266 ORTHO05D006416 8.8e-26 121.7 94 69.1
Thhalv10023957m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 2.5e-20 103.6 129 45.0
ATR0589G038 Amborella trichopoda HOM05D005266 ORTHO05D006416 2.7e-19 100.1 125 44.8
TPR.G25301 Trifolium pratense HOM05D005266 ORTHO05D006416 3.0e-18 96.7 96 53.1
Thecc.02G199200 Theobroma cacao HOM05D005266 ORTHO05D006416 4.8e-16 89.4 73 63.0
CBR_g26176 Chara braunii HOM05D005266 ORTHO05D006416 6.3e-16 89.0 168 33.3
TAR303G0001 Trochodendron aralioides HOM05D005266 ORTHO05D003403 5.9e-14 82.4 60 66.7
Thecc.02G222700 Theobroma cacao HOM05D005266 ORTHO05D006416 1.5e-12 77.8 50 74.0
Thecc.03G165000 Theobroma cacao HOM05D005266 ORTHO05D006416 1.4e-10 71.2 50 66.0
FAN18G1945 Fragaria x ananassa HOM05D005266 ORTHO05D006416 2.0e-09 67.4 68 52.9
FAN13G3269 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.7e-08 64.3 68 50.0
Rhsim03G0018500 Rhododendron simsii HOM05D005266 ORTHO05D006416 4.8e-08 62.8 37 75.7
MBI01_g05788_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 6.3e-08 62.4 88 39.8
MBI01_g28590_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 8.3e-08 62.0 49 59.2
Rhsim12G0186300 Rhododendron simsii HOM05D005266 ORTHO05D006416 4.1e-07 59.7 38 71.1
Hund08759 Selenicereus undatus HOM05D005266 ORTHO05D006416 2.0e-06 57.4 51 56.9
TPR.G25299 Trifolium pratense HOM05D005266 ORTHO05D006416 2.0e-06 57.4 107 35.5
BolC2t11043H Brassica oleracea HOM05D005266 ORTHO05D006416 3.5e-06 56.6 86 45.3
Hund08403 Selenicereus undatus HOM05D006468 ORTHO05D006908 5.9e-06 55.8 44 59.1


User provided reference genes

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