Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 3.8e-243 844.3 413 100.0
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 7.8e-228 793.5 413 93.0
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 5.1e-219 764.2 413 89.1
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 1.3e-193 679.9 416 81.5
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 9.9e-191 670.2 416 79.3
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.9e-190 668.7 416 79.1
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.9e-190 668.7 415 79.0
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 4.9e-190 667.9 416 79.3
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 4.9e-190 667.9 415 79.3
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.3e-187 659.1 416 78.4
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 3.0e-179 632.1 421 75.5
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 2.1e-177 625.9 415 73.7
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 4.8e-177 624.8 422 73.0
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 4.8e-177 624.8 416 71.4
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 1.8e-176 622.9 420 74.0
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 4.1e-176 621.7 422 74.2
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 1.5e-175 619.8 420 73.8
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 3.2e-173 612.1 416 74.0
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 7.2e-173 610.9 417 71.2
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 1.2e-172 610.1 417 71.2
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 4.6e-172 608.2 424 71.5
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 1.1e-170 603.6 421 68.4
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 9.7e-170 600.5 412 70.6
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 1.3e-169 600.1 423 71.4
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 6.3e-169 597.8 426 68.5
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 1.1e-168 597.0 419 70.4
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 2.4e-168 595.9 421 71.5
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 1.5e-167 593.2 419 71.4
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 4.5e-167 591.7 422 67.3
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 4.5e-167 591.7 422 67.3
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 5.9e-167 591.3 421 67.9
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 7.7e-167 590.9 417 68.6
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 5.0e-166 588.2 421 66.5
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 2.5e-165 585.9 414 68.6
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 2.5e-165 585.9 420 67.6
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 4.2e-165 585.1 416 67.5
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 5.5e-165 584.7 420 67.4
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 7.2e-165 584.3 420 66.4
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 7.2e-165 584.3 421 68.2
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 1.6e-164 583.2 420 67.1
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 7.9e-164 580.9 421 67.7
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 3.9e-163 578.6 420 67.4
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 8.8e-163 577.4 414 67.9
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 1.1e-162 577.0 449 66.4
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 1.5e-162 576.6 428 67.1
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 3.3e-162 575.5 419 67.5
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 4.3e-162 575.1 420 66.2
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 7.4e-162 574.3 419 69.5
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 8.2e-161 570.9 418 69.4
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.4e-160 570.1 422 69.2
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 1.8e-160 569.7 391 70.8
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 2.0e-159 566.2 421 67.0
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 2.6e-159 565.8 519 56.8
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 2.2e-158 562.8 420 67.1
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 3.8e-158 562.0 417 68.1
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 3.8e-158 562.0 425 66.4
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 5.0e-158 561.6 493 57.8
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 6.5e-158 561.2 416 67.1
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 7.2e-157 557.8 422 65.9
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 9.4e-157 557.4 391 68.5
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 2.1e-156 556.2 417 65.5
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 6.1e-156 554.7 425 64.9
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 3.9e-155 552.0 426 64.1
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 2.0e-154 549.7 427 65.6
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 5.7e-154 548.1 415 64.3
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 1.3e-153 547.0 521 54.7
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 8.2e-153 544.3 415 65.1
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 1.8e-152 543.1 421 63.2
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 1.8e-152 543.1 421 62.9
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 5.3e-152 541.6 419 64.7
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 3.8e-150 535.4 418 62.9
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 2.7e-148 529.3 413 63.2
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 4.7e-148 528.5 418 64.6
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 4.0e-147 525.4 420 63.1
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 1.7e-145 520.0 419 59.2
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 2.8e-145 519.2 416 62.5
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 8.2e-145 517.7 424 60.6
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 1.4e-144 516.9 422 63.3
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 9.1e-144 514.2 426 58.2
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 2.7e-143 512.7 419 58.9
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 7.7e-143 511.1 463 58.1
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 7.7e-143 511.1 387 65.4
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 7.7e-143 511.1 401 65.6
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.7e-142 510.0 413 62.5
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.6e-140 503.4 412 60.7
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 2.1e-140 503.1 412 60.4
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 6.1e-140 501.5 389 63.8
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 4.8e-137 491.9 463 53.6
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 4.8e-137 491.9 420 57.4
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 5.4e-136 488.4 452 53.5
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 3.5e-135 485.7 413 60.5
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 1.3e-134 483.8 416 59.9
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 1.7e-134 483.4 415 58.3
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 2.5e-133 479.6 419 57.3
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 3.6e-132 475.7 415 56.6
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 1.8e-131 473.4 364 65.1
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 5.2e-131 471.9 410 57.8
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 1.2e-130 470.7 415 56.4
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 1.2e-127 460.7 413 55.9
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 2.0e-127 459.9 413 56.2
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 1.7e-126 456.8 424 55.0
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 3.3e-125 452.6 450 52.4
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 8.0e-124 448.0 449 51.7
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.4e-123 447.2 342 67.3
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.4e-123 447.2 342 67.3
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 9.8e-122 441.0 414 52.9
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 1.4e-120 437.2 413 52.5
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 2.4e-120 436.4 414 52.7
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 2.4e-120 436.4 414 52.7
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 3.2e-120 436.0 413 52.8
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 4.0e-107 392.5 436 45.4
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 7.5e-106 388.3 424 50.5
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 2.2e-105 386.7 434 47.0
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 6.4e-105 385.2 412 47.3
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 1.4e-104 384.0 411 47.4
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 1.2e-100 370.9 275 65.5
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 3.6e-100 369.4 419 50.6
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 2.9e-97 359.8 271 62.7
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.7e-87 326.6 163 90.2
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 6.6e-86 322.0 415 44.1
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.7e-78 297.4 427 38.6
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 3.3e-77 293.1 141 91.5
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 7.4e-77 292.0 158 81.6
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 3.0e-70 270.0 541 32.9
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.6e-68 264.2 137 88.3
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 8.5e-57 225.3 121 79.3
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.4e-48 198.0 91 93.4
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.4e-43 181.4 195 45.6
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 1.3e-33 148.3 133 57.9
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.3e-30 137.5 73 89.0
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.3e-30 137.5 73 89.0
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 3.0e-30 137.1 81 75.3
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 4.5e-26 123.2 66 81.8
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 2.1e-23 114.4 59 83.1
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 5.2e-22 109.8 111 45.9
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 3.4e-21 107.1 66 75.8
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.1e-16 92.0 74 64.9
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 5.5e-16 89.7 184 32.6
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 6.1e-15 86.3 75 62.7
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 5.2e-14 83.2 61 72.1


User provided reference genes

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