Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 2.8e-38 161.4 78 100.0
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 1.6e-28 129.0 70 91.4
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 8.0e-25 116.7 69 84.1
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 4.4e-23 110.9 71 78.9
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 3.7e-22 107.8 67 77.6
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 6.3e-22 107.1 71 77.5
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 6.3e-22 107.1 71 77.5
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 6.3e-22 107.1 71 77.5
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 6.3e-22 107.1 66 78.8
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 2.4e-21 105.1 70 77.1
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 3.1e-21 104.8 66 77.3
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 5.4e-21 104.0 66 77.3
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 5.4e-21 104.0 68 76.5
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 1.6e-20 102.4 64 76.6
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 2.0e-20 102.1 67 73.1
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 2.7e-20 101.7 67 73.1
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 2.7e-20 101.7 67 71.6
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 3.5e-20 101.3 66 72.7
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 4.5e-20 100.9 65 78.5
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 7.7e-20 100.1 66 71.2
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 1.3e-19 99.4 64 75.0
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 1.7e-19 99.0 66 75.8
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 2.3e-19 98.6 66 75.8
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 2.9e-19 98.2 66 68.2
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 3.8e-19 97.8 69 68.1
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 5.0e-19 97.4 66 71.2
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 5.0e-19 97.4 69 68.1
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 5.0e-19 97.4 66 75.8
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 5.0e-19 97.4 69 68.1
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 6.6e-19 97.1 66 71.2
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 8.6e-19 96.7 66 71.2
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 1.1e-18 96.3 67 70.1
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 1.1e-18 96.3 64 73.4
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 1.5e-18 95.9 63 73.0
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 1.9e-18 95.5 66 69.7
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 2.5e-18 95.1 65 73.8
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 2.5e-18 95.1 69 66.7
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 2.5e-18 95.1 69 66.7
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 2.5e-18 95.1 69 72.5
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 3.3e-18 94.7 69 66.7
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 3.3e-18 94.7 64 73.4
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 4.2e-18 94.4 69 66.7
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 5.5e-18 94.0 69 65.2
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 5.5e-18 94.0 60 73.3
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 7.2e-18 93.6 68 66.2
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 1.2e-17 92.8 67 71.6
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 1.2e-17 92.8 68 70.6
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 1.6e-17 92.4 62 69.4
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 1.6e-17 92.4 64 70.3
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 2.1e-17 92.0 64 68.8
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 2.8e-17 91.7 68 67.6
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 4.7e-17 90.9 66 66.7
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 4.7e-17 90.9 66 66.7
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 4.7e-17 90.9 64 70.3
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 4.7e-17 90.9 69 63.8
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 6.1e-17 90.5 64 68.8
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 6.1e-17 90.5 64 68.8
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 8.0e-17 90.1 64 70.3
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 1.8e-16 89.0 72 59.7
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 2.3e-16 88.6 66 68.2
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 3.0e-16 88.2 64 67.2
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 3.0e-16 88.2 72 63.9
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 4.0e-16 87.8 66 68.2
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 4.0e-16 87.8 68 69.1
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 6.8e-16 87.0 64 67.2
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 6.8e-16 87.0 66 65.2
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 1.2e-15 86.3 67 61.2
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 2.0e-15 85.5 67 64.2
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 2.6e-15 85.1 69 60.9
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 3.4e-15 84.7 63 61.9
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 5.7e-15 84.0 69 59.4
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 9.8e-15 83.2 69 58.0
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 1.7e-14 82.4 66 60.6
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 1.7e-14 82.4 66 60.6
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 1.7e-14 82.4 66 60.6
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 1.7e-14 82.4 66 60.6
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 1.7e-14 82.4 66 60.6
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 1.7e-14 82.4 66 60.6
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 1.7e-14 82.4 67 59.7
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 3.7e-14 81.3 67 62.7
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 6.3e-14 80.5 69 58.0
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 1.4e-13 79.3 69 56.5
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 2.4e-13 78.6 68 61.8
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 4.1e-13 77.8 51 72.5
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 7.0e-13 77.0 63 63.5
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 7.0e-13 77.0 68 54.4
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 1.6e-12 75.9 96 45.8
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 1.6e-12 75.9 64 57.8
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 1.6e-12 75.9 67 65.7
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 2.0e-12 75.5 65 60.0
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 2.0e-12 75.5 67 61.2
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 1.0e-11 73.2 42 78.6
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 3.9e-11 71.2 64 57.8
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 1.5e-10 69.3 50 62.0
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 2.5e-10 68.6 42 71.4
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 2.5e-10 68.6 69 60.9
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 4.3e-10 67.8 78 51.3
HanXRQChr17g0533231 Helianthus annuus HOM05D007428 ORTHO05D009308 8.9e-08 60.1 49 61.2
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 1.5e-07 59.3 47 61.7
CAN.G792.73 Capsicum annuum HOM05D003118 ORTHO05D009308 8.3e-06 53.5 44 65.9
Ca_08439_v3 Cicer arietinum L. HOM05D007428 ORTHO05D009308 8.3e-06 53.5 61 50.8


User provided reference genes

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