Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 2.5e-28 127.9 57 100.0
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 5.8e-25 116.7 54 94.4
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 1.3e-24 115.5 54 92.6
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 1.3e-24 115.5 54 92.6
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 2.2e-24 114.8 54 92.6
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 2.2e-24 114.8 54 92.6
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 2.2e-24 114.8 54 92.6
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 2.2e-24 114.8 54 92.6
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 4.9e-24 113.6 54 90.7
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 6.5e-24 113.2 54 90.7
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 6.5e-24 113.2 54 90.7
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 6.5e-24 113.2 54 90.7
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 6.5e-24 113.2 55 87.3
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 8.4e-24 112.8 54 88.9
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 8.4e-24 112.8 54 88.9
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 8.4e-24 112.8 54 88.9
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 8.4e-24 112.8 54 87.0
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 1.1e-23 112.5 54 88.9
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 1.1e-23 112.5 54 87.0
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 1.1e-23 112.5 54 87.0
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 1.1e-23 112.5 54 87.0
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 1.1e-23 112.5 54 87.0
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 1.1e-23 112.5 54 87.0
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 1.1e-23 112.5 54 87.0
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 1.1e-23 112.5 56 83.9
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 1.1e-23 112.5 54 90.7
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 1.1e-23 112.5 54 88.9
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.1e-23 112.5 54 90.7
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.1e-23 112.5 54 90.7
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 1.1e-23 112.5 54 90.7
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 1.1e-23 112.5 54 90.7
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 1.1e-23 112.5 54 90.7
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 1.1e-23 112.5 54 88.9
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 1.4e-23 112.1 54 88.9
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 1.4e-23 112.1 54 87.0
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 1.9e-23 111.7 54 87.0
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 1.9e-23 111.7 54 87.0
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 1.9e-23 111.7 54 88.9
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 1.9e-23 111.7 54 88.9
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 3.2e-23 110.9 54 88.9
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 3.2e-23 110.9 54 88.9
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 3.2e-23 110.9 54 88.9
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 3.2e-23 110.9 54 88.9
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 3.2e-23 110.9 54 88.9
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 3.2e-23 110.9 54 88.9
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 5.5e-23 110.2 54 87.0
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 7.1e-23 109.8 54 88.9
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 7.1e-23 109.8 54 88.9
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 9.3e-23 109.4 54 85.2
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 9.3e-23 109.4 54 85.2
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 9.3e-23 109.4 55 81.8
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 9.3e-23 109.4 54 87.0
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 9.3e-23 109.4 54 87.0
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 1.2e-22 109.0 54 88.9
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 1.2e-22 109.0 54 85.2
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 1.2e-22 109.0 54 88.9
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.2e-22 109.0 54 83.3
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.2e-22 109.0 54 83.3
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.2e-22 109.0 54 83.3
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 1.2e-22 109.0 54 88.9
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 1.6e-22 108.6 54 87.0
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.6e-22 108.6 54 87.0
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 1.6e-22 108.6 54 87.0
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 1.6e-22 108.6 54 87.0
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 2.1e-22 108.2 54 85.2
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 2.1e-22 108.2 54 87.0
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 2.1e-22 108.2 54 87.0
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 2.1e-22 108.2 54 87.0
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 2.1e-22 108.2 54 85.2
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 2.1e-22 108.2 54 87.0
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 2.1e-22 108.2 54 87.0
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 2.1e-22 108.2 54 85.2
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 2.1e-22 108.2 54 85.2
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 2.1e-22 108.2 54 85.2
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 3.5e-22 107.5 54 87.0
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 3.5e-22 107.5 54 87.0
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 3.5e-22 107.5 54 81.5
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 3.5e-22 107.5 54 87.0
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 6.0e-22 106.7 54 83.3
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 7.9e-22 106.3 54 85.2
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 1.0e-21 105.9 54 85.2
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 1.0e-21 105.9 54 85.2
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 1.8e-21 105.1 54 87.0
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 1.8e-21 105.1 54 85.2
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 2.3e-21 104.8 54 83.3
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 2.3e-21 104.8 54 83.3
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 2.3e-21 104.8 54 83.3
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 2.3e-21 104.8 54 83.3
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 2.3e-21 104.8 54 85.2
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 3.0e-21 104.4 54 81.5
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 3.0e-21 104.4 54 83.3
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 5.1e-21 103.6 54 85.2
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 8.7e-21 102.8 54 81.5
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 8.7e-21 102.8 54 81.5
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 1.1e-20 102.4 54 81.5
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.5e-20 102.1 54 81.5
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 1.5e-20 102.1 49 87.8
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.9e-20 101.7 54 83.3
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 2.5e-20 101.3 54 83.3
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 2.5e-20 101.3 54 79.6
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 5.7e-20 100.1 54 79.6
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 7.4e-20 99.8 49 87.8
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 2.2e-19 98.2 54 81.5
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 6.3e-19 96.7 47 85.1
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 2.4e-18 94.7 55 74.5
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.0e-17 91.7 54 75.9
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.0e-17 91.7 54 75.9
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 7.6e-17 89.7 54 72.2
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 1.7e-16 88.6 54 68.5
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 2.2e-16 88.2 54 66.7
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 5.0e-16 87.0 54 66.7
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 6.5e-16 86.7 54 66.7
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.9e-15 85.1 54 64.8
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 4.2e-15 84.0 54 63.0
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 4.8e-11 70.5 54 61.1
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.1e-10 69.3 54 53.7
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 1.4e-07 58.9 30 73.3


User provided reference genes

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