Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 9.7e-92 340.1 171 100.0
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 1.8e-77 292.7 170 85.3
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 3.2e-74 282.0 170 81.2
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 7.0e-74 280.8 170 81.2
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 7.0e-74 280.8 170 81.2
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 9.2e-74 280.4 166 82.5
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 2.0e-73 279.3 170 80.0
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 2.7e-73 278.9 167 82.6
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 7.8e-73 277.3 165 83.0
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 1.3e-72 276.6 165 82.4
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 3.9e-72 275.0 171 78.9
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 4.3e-71 271.6 168 79.8
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 1.0e-69 266.9 164 78.7
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 1.8e-69 266.2 171 76.0
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 5.2e-69 264.6 164 78.0
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 8.9e-69 263.8 171 76.6
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 2.0e-68 262.7 165 80.0
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 3.4e-68 261.9 165 78.8
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 3.4e-68 261.9 165 79.4
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 9.8e-68 260.4 172 75.0
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 1.3e-67 260.0 165 77.0
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 1.1e-66 256.9 154 83.1
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 1.1e-66 256.9 154 83.1
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 1.9e-66 256.1 163 76.7
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 1.9e-66 256.1 163 76.7
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 7.0e-66 254.2 168 75.6
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 2.7e-65 252.3 163 75.5
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 4.6e-65 251.5 170 74.1
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 4.6e-65 251.5 162 74.1
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 1.0e-64 250.4 162 75.9
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 1.3e-64 250.0 181 71.8
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 3.0e-64 248.8 163 75.5
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 3.0e-64 248.8 163 75.5
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 3.9e-64 248.4 172 72.1
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 3.9e-64 248.4 206 63.6
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 8.6e-64 247.3 172 71.5
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 1.1e-63 246.9 165 73.3
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 1.5e-63 246.5 162 76.5
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 1.5e-63 246.5 167 70.7
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 7.3e-63 244.2 162 74.1
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 7.3e-63 244.2 171 69.0
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 9.5e-63 243.8 163 72.4
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 9.5e-63 243.8 163 72.4
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.6e-62 243.0 172 68.6
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 2.8e-62 242.3 172 70.3
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 8.9e-61 237.3 165 71.5
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 1.5e-60 236.5 167 70.7
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 1.5e-60 236.5 172 66.9
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 2.0e-60 236.1 167 70.7
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 5.8e-60 234.6 168 70.8
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 3.7e-59 231.9 172 67.4
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 4.9e-59 231.5 166 67.5
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 4.9e-59 231.5 154 74.0
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 6.4e-59 231.1 169 68.6
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 8.3e-59 230.7 165 70.3
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 8.3e-59 230.7 154 75.3
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 4.1e-58 228.4 163 69.3
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 7.1e-58 227.6 154 72.7
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 7.1e-58 227.6 166 71.1
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 1.2e-57 226.9 163 68.7
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 2.1e-57 226.1 155 74.8
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 3.5e-57 225.3 163 68.1
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 1.3e-56 223.4 172 65.7
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 1.3e-56 223.4 175 64.0
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 1.7e-56 223.0 163 67.5
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 6.6e-56 221.1 169 67.5
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 3.3e-55 218.8 167 63.5
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 2.1e-54 216.1 166 62.7
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 3.6e-54 215.3 164 65.9
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 3.6e-54 215.3 168 61.9
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 4.0e-53 211.8 167 62.9
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 4.0e-53 211.8 167 62.9
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 8.9e-53 210.7 167 62.3
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 8.9e-53 210.7 167 62.3
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 8.9e-53 210.7 167 62.3
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 1.5e-52 209.9 171 60.2
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 1.5e-52 209.9 171 60.2
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 1.5e-52 209.9 165 63.6
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 2.0e-52 209.5 172 61.6
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 3.4e-52 208.8 171 61.4
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 4.4e-52 208.4 172 61.0
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 4.4e-52 208.4 171 60.2
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 9.9e-52 207.2 168 61.9
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 1.3e-51 206.8 171 60.2
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 4.9e-51 204.9 171 60.2
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 2.4e-50 202.6 174 60.3
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 4.1e-50 201.8 174 60.3
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 4.1e-50 201.8 174 60.3
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 5.4e-50 201.4 162 59.9
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 9.2e-50 200.7 152 69.1
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 4.6e-49 198.4 120 83.3
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 6.6e-48 194.5 162 62.3
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 1.5e-47 193.4 177 56.5
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 1.9e-47 193.0 170 57.1
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 2.5e-47 192.6 124 76.6
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 1.1e-45 187.2 168 58.3
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 1.1e-42 177.2 113 75.2
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 6.0e-41 171.4 166 55.4
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 7.3e-39 164.5 169 46.2
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 1.1e-37 160.6 179 46.9
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 3.1e-37 159.1 182 50.0
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 4.0e-37 158.7 179 47.5
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-35 153.7 182 49.5
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 6.4e-35 151.4 165 49.1
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 3.5e-33 145.6 173 43.4
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 3.0e-32 142.5 165 50.9
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 6.6e-32 141.4 175 49.7
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 2.4e-29 132.9 110 56.4
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 3.4e-28 129.0 178 41.0
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 4.5e-28 128.6 119 54.6
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 7.6e-28 127.9 184 41.3
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-26 124.0 196 40.3
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 3.2e-26 122.5 112 58.0
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 5.4e-26 121.7 181 39.2
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 1.8e-24 116.7 164 39.6
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.1e-23 114.0 76 69.7
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 4.3e-23 112.1 171 41.5
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 2.1e-22 109.8 70 77.1
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 3.7e-22 109.0 118 54.2
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 4.0e-21 105.5 169 39.1
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-21 105.5 136 41.2
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 6.9e-21 104.8 164 38.4
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-20 103.6 164 36.6
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 2.6e-20 102.8 174 35.6
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 7.6e-20 101.3 164 34.8
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 7.6e-20 101.3 76 65.8
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 2.2e-19 99.8 165 37.6
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 2.9e-19 99.4 116 50.9
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 4.9e-19 98.6 71 73.2
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-18 97.4 165 37.6
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 5.5e-18 95.1 174 35.6
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 4.6e-17 92.0 153 34.0
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 3.9e-16 89.0 179 34.1
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-15 86.7 166 33.1
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 5.7e-15 85.1 108 44.4
Atru.chr4.1970 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-14 83.6 167 32.9
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 4.8e-14 82.0 104 44.2
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 6.2e-14 81.6 167 31.7
Atru.chr1.4012 Acer truncatum HOM05D004737 ORTHO05D005623 4.1e-13 79.0 184 29.9
Atru.chr12.1697 Acer truncatum HOM05D004737 ORTHO05D005623 6.9e-13 78.2 158 29.7
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 6.9e-13 78.2 146 34.9
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 9.0e-13 77.8 46 78.3
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-12 77.4 180 30.0
Atru.chr12.1688 Acer truncatum HOM05D004737 ORTHO05D005623 3.4e-12 75.9 131 32.8
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 4.5e-12 75.5 171 31.6
Atru.chr12.1394 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-10 70.9 180 28.9
Atru.chr5.3478 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-10 70.1 125 36.0
Atru.chr7.1971 Acer truncatum HOM05D004737 ORTHO05D005623 7.1e-10 68.2 132 31.1
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 2.7e-09 66.2 132 33.3
Atru.chr8.1290 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-08 63.5 175 29.1
Medtr5g038850 Medicago truncatula HOM05D004737 ORTHO05D005623 3.9e-08 62.4 128 31.2
Atru.chr1.4019 Acer truncatum HOM05D002880 ORTHO05D005623 6.7e-08 61.6 105 39.0
Atru.chr6.94 Acer truncatum HOM05D004737 ORTHO05D005623 9.7e-07 57.8 64 46.9


User provided reference genes

Program Settings