Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 3.6e-134 481.5 228 100.0
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 9.3e-106 387.1 220 80.5
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.2e-105 386.7 224 83.0
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 2.1e-105 386.0 215 82.8
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 2.1e-105 386.0 208 85.6
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 2.7e-105 385.6 201 90.0
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 4.6e-105 384.8 219 80.8
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.3e-104 383.3 210 85.7
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 1.3e-104 383.3 220 80.0
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 1.7e-104 382.9 207 84.5
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 2.3e-104 382.5 210 84.3
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 5.1e-104 381.3 202 88.1
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 8.7e-104 380.6 214 81.3
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 1.5e-103 379.8 215 84.7
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 2.5e-103 379.0 210 82.9
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 3.3e-103 378.6 215 80.5
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 9.6e-103 377.1 213 80.8
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 1.3e-102 376.7 210 81.4
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 2.1e-102 375.9 215 80.0
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 6.2e-102 374.4 210 81.4
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 8.1e-102 374.0 210 81.4
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 8.1e-102 374.0 216 79.6
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 1.8e-101 372.9 210 81.4
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 2.4e-101 372.5 189 94.2
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 5.3e-101 371.3 209 80.9
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 9.0e-101 370.5 215 78.6
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 1.2e-100 370.2 228 77.2
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 2.6e-100 369.0 215 79.5
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 2.6e-100 369.0 206 82.5
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 7.6e-100 367.5 206 80.6
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 9.9e-100 367.1 217 77.0
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 1.1e-98 363.6 215 79.1
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 1.4e-98 363.2 210 77.6
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 2.4e-98 362.5 215 79.1
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 5.4e-98 361.3 215 78.6
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 4.6e-97 358.2 219 75.3
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 1.0e-96 357.1 212 77.4
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 1.3e-96 356.7 213 78.9
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 6.7e-96 354.4 215 77.2
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 1.1e-95 353.6 204 78.4
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 1.9e-95 352.8 205 77.1
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 1.9e-95 352.8 187 85.6
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 1.3e-94 350.1 212 77.4
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 1.6e-94 349.7 215 75.3
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 4.8e-94 348.2 215 76.3
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 4.8e-94 348.2 226 71.7
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 8.1e-94 347.4 215 77.2
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 1.1e-93 347.1 215 75.3
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 9.0e-93 344.0 208 77.4
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 2.0e-92 342.8 246 66.7
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 2.0e-92 342.8 215 74.0
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 2.6e-92 342.4 213 75.1
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 5.8e-92 341.3 208 77.9
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 5.8e-92 341.3 215 73.5
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 7.6e-92 340.9 214 73.8
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 1.7e-91 339.7 206 75.2
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 2.9e-91 339.0 213 72.3
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 3.8e-91 338.6 213 71.8
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 3.8e-91 338.6 213 71.8
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 1.1e-90 337.0 209 75.6
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 2.5e-90 335.9 213 71.4
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 2.5e-90 335.9 213 71.4
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 2.5e-90 335.9 206 71.8
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 3.2e-90 335.5 199 78.4
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 3.2e-90 335.5 215 74.9
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 4.2e-90 335.1 204 73.5
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 5.5e-90 334.7 194 78.4
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 9.3e-90 334.0 215 72.6
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 6.0e-89 331.3 215 73.5
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 7.9e-89 330.9 209 74.6
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.0e-88 330.5 206 70.4
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 1.3e-88 330.1 214 70.1
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 2.8e-86 322.4 203 71.9
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 6.2e-86 321.2 217 69.6
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 1.4e-85 320.1 217 69.6
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 5.3e-85 318.2 217 69.1
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 6.9e-85 317.8 181 80.7
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 1.2e-84 317.0 217 69.1
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 1.2e-84 317.0 199 76.9
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 4.5e-84 315.1 217 68.2
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 7.6e-84 314.3 194 77.3
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 7.6e-84 314.3 182 80.8
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 3.2e-82 308.9 182 80.2
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 1.8e-80 303.1 194 72.7
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 5.9e-76 288.1 172 75.0
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 1.1e-71 273.9 151 84.1
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 2.0e-71 273.1 210 58.1
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 2.0e-71 273.1 210 58.1
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 2.5e-71 272.7 210 58.1
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 9.7e-71 270.8 160 80.0
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 3.7e-70 268.9 156 82.7
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 1.4e-69 266.9 201 63.2
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 2.6e-68 262.7 160 77.5
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 3.2e-66 255.8 203 59.1
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 5.5e-66 255.0 138 85.5
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 1.0e-64 250.8 182 65.4
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 1.0e-64 250.8 213 61.5
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 9.7e-55 217.6 147 72.1
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 1.8e-53 213.4 224 45.1
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 4.7e-49 198.7 117 76.1
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 3.5e-44 182.6 120 75.0
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 2.2e-43 179.9 106 78.3
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 5.0e-43 178.7 195 47.7
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.6e-41 173.7 87 87.4
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 6.1e-41 171.8 101 77.2
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 1.4e-40 170.6 121 71.1
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 1.5e-39 167.2 97 82.5
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 4.7e-33 145.6 85 80.0
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 7.0e-29 131.7 70 82.9
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 9.2e-29 131.3 79 75.9
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 2.0e-28 130.2 101 62.4
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 7.3e-26 121.7 162 38.3
MCO12G281 Micromonas commoda HOM05D006173 ORTHO05D007685 1.2e-17 94.4 245 28.2
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 4.0e-16 89.4 53 75.5
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 1.3e-14 84.3 58 70.7
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 1.7e-14 84.0 44 79.5


User provided reference genes

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