Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 1.1e-153 546.6 270 100.0
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 3.8e-74 282.3 266 59.4
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 8.0e-56 221.5 255 51.0
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 4.5e-51 205.7 278 45.3
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 2.3e-47 193.4 244 45.5
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 2.6e-46 189.9 237 45.1
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 4.4e-46 189.1 259 43.2
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 3.7e-45 186.0 237 44.3
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 1.4e-44 184.1 244 43.0
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 1.8e-44 183.7 255 42.4
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 3.1e-44 183.0 246 40.7
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 3.1e-44 183.0 240 43.3
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 4.1e-44 182.6 253 43.5
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 7.7e-43 178.3 239 41.8
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.0e-42 177.9 244 41.4
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 1.0e-42 177.9 245 41.6
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.3e-42 177.6 237 46.8
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 8.6e-42 174.9 240 42.9
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.1e-41 174.5 237 46.4
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 1.1e-41 174.5 246 40.2
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 2.5e-41 173.3 252 41.3
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 2.5e-41 173.3 242 40.1
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 3.3e-41 172.9 247 39.3
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 4.2e-41 172.6 240 42.1
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 7.2e-41 171.8 229 43.2
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 7.2e-41 171.8 245 41.2
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.6e-40 170.6 169 52.7
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 2.8e-40 169.9 234 43.2
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 3.6e-40 169.5 244 42.6
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 6.1e-40 168.7 226 43.8
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 8.0e-40 168.3 241 39.4
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 8.0e-40 168.3 245 41.2
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 8.0e-40 168.3 242 41.3
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 1.0e-39 167.9 244 42.2
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 1.0e-39 167.9 242 38.8
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.4e-39 167.5 245 40.0
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 1.4e-39 167.5 252 37.7
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.8e-39 167.2 245 40.0
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 1.8e-39 167.2 242 41.3
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 3.0e-39 166.4 234 41.9
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 3.0e-39 166.4 240 40.4
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 5.2e-39 165.6 241 40.2
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 6.8e-39 165.2 242 38.8
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 6.8e-39 165.2 241 40.2
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 6.8e-39 165.2 253 39.5
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 6.8e-39 165.2 247 39.3
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 8.9e-39 164.9 240 38.8
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 1.2e-38 164.5 243 39.5
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 2.6e-38 163.3 250 41.2
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 2.6e-38 163.3 240 41.7
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 2.6e-38 163.3 254 39.8
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.4e-38 162.9 245 41.2
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 3.4e-38 162.9 254 39.4
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 4.4e-38 162.5 208 44.2
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 4.4e-38 162.5 245 40.4
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 5.7e-38 162.2 236 41.5
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 9.8e-38 161.4 244 40.6
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 3.7e-37 159.5 243 37.4
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 3.7e-37 159.5 209 43.1
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 3.7e-37 159.5 206 42.7
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 8.3e-37 158.3 242 40.1
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 1.1e-36 157.9 253 37.5
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 1.4e-36 157.5 253 38.7
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 1.8e-36 157.1 228 40.8
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 2.4e-36 156.8 225 40.4
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.1e-36 156.0 245 38.8
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 7.0e-36 155.2 232 40.5
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 5.9e-35 152.1 230 38.3
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 7.8e-35 151.8 243 36.6
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 3.9e-34 149.4 256 35.5
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 5.0e-34 149.1 227 36.6
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 5.0e-34 149.1 196 43.9
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.9e-33 147.1 208 41.3
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 5.6e-33 145.6 98 68.4
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 7.3e-33 145.2 204 40.7
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 7.3e-33 145.2 213 40.8
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 9.5e-33 144.8 245 37.1
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 1.6e-32 144.1 236 35.6
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 2.1e-32 143.7 238 35.7
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 2.1e-32 143.7 236 37.3
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 2.1e-32 143.7 210 39.0
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 3.6e-32 142.9 246 35.0
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.6e-32 142.9 250 35.6
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 3.6e-32 142.9 214 40.2
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 3.6e-32 142.9 244 34.8
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 4.7e-32 142.5 187 44.4
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 4.7e-32 142.5 228 36.4
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 8.0e-32 141.7 232 37.9
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 8.0e-32 141.7 232 37.9
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 8.0e-32 141.7 240 36.7
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 8.0e-32 141.7 223 38.1
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 1.4e-31 141.0 226 39.4
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 1.4e-31 141.0 226 39.4
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 1.4e-31 141.0 226 39.4
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 1.4e-31 141.0 239 36.4
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 2.3e-31 140.2 234 36.3
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 2.3e-31 140.2 253 35.2
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 2.3e-31 140.2 228 36.8
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 3.1e-31 139.8 254 36.2
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 3.1e-31 139.8 230 37.8
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 6.8e-31 138.7 202 40.1
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 6.8e-31 138.7 172 45.3
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 6.8e-31 138.7 253 34.0
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.2e-30 137.9 246 33.3
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 1.2e-30 137.9 189 43.4
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 1.5e-30 137.5 230 37.4
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 2.0e-30 137.1 252 34.1
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 4.4e-30 136.0 106 61.3
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.4e-30 136.0 217 37.8
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 4.4e-30 136.0 251 33.5
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 5.8e-30 135.6 247 34.8
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 5.8e-30 135.6 241 35.3
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 9.8e-30 134.8 238 34.5
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 1.3e-29 134.4 246 35.8
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.7e-29 134.0 136 51.5
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 4.9e-29 132.5 232 35.3
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 4.9e-29 132.5 232 35.3
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 6.4e-29 132.1 239 37.7
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 1.4e-28 131.0 197 40.6
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.2e-28 129.8 237 34.6
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 2.7e-27 126.7 87 63.2
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 4.6e-27 125.9 229 34.1
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 6.0e-27 125.6 199 38.2
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 7.8e-27 125.2 220 36.8
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 7.8e-27 125.2 207 37.2
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 1.7e-26 124.0 217 32.7
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 5.0e-26 122.5 101 55.4
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 8.6e-26 121.7 204 39.2
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.5e-25 120.2 81 66.7
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 3.3e-25 119.8 97 58.8
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 4.3e-25 119.4 265 31.3
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 5.6e-25 119.0 227 34.8
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 7.3e-25 118.6 266 31.2
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 7.3e-25 118.6 201 36.8
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.6e-24 117.5 236 34.3
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 2.1e-24 117.1 154 45.5
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.8e-24 116.7 106 55.7
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 4.7e-24 115.9 227 33.9
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 4.7e-24 115.9 214 34.6
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 8.1e-24 115.2 217 33.6
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 1.8e-23 114.0 207 36.7
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 2.3e-23 113.6 276 28.3
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 2.3e-23 113.6 230 34.3
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 6.8e-23 112.1 85 60.0
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 2.0e-22 110.5 293 29.4
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 2.2e-21 107.1 194 36.6
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 6.4e-21 105.5 254 30.3
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.9e-20 104.0 251 33.1
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 1.6e-19 100.9 138 39.9
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 2.1e-19 100.5 196 35.2
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 1.5e-17 94.4 197 33.5
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 5.6e-17 92.4 106 48.1
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.6e-16 90.9 237 27.0
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 6.2e-16 89.0 74 54.1
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 2.3e-15 87.0 113 39.8
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 1.5e-14 84.3 224 30.4
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 2.0e-14 84.0 56 71.4
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 2.2e-13 80.5 80 46.2
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 3.2e-12 76.6 56 60.7
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 5.4e-12 75.9 207 32.4
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 2.1e-11 73.9 100 42.0
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 2.7e-11 73.6 68 52.9
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 3.5e-11 73.2 178 32.6
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 4.6e-11 72.8 65 55.4
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 6.0e-11 72.4 74 54.1
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 7.8e-11 72.0 78 50.0
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.7e-10 70.9 78 52.6
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 3.0e-10 70.1 63 54.0
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 6.6e-10 68.9 46 65.2
GSVIVG01033244001 Vitis vinifera HOM05D003612 ORTHO05D004323 9.6e-09 65.1 61 54.1
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 1.2e-08 64.7 76 44.7
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 2.8e-08 63.5 41 63.4
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.7e-08 62.8 141 30.5
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 1.4e-07 61.2 53 50.9
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 2.4e-07 60.5 41 63.4
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 5.2e-07 59.3 40 62.5
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 2.0e-06 57.4 213 23.9


User provided reference genes

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