Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1961.4 989 100.0
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1917.9 989 98.0
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1855.1 989 94.2
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1809.7 989 91.6
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1806.6 989 91.6
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1791.5 1013 89.2
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1790.0 1013 89.2
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1772.7 1013 88.5
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1765.0 990 89.0
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1758.0 986 89.1
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1751.1 989 87.5
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1744.2 989 87.8
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1737.2 989 87.0
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1736.5 989 87.7
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1731.8 986 86.9
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1728.8 989 85.8
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1723.0 990 86.6
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1721.4 989 86.6
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1719.1 989 86.6
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1716.0 990 86.1
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1709.9 989 85.6
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1709.9 990 85.5
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1708.7 989 85.3
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1708.0 1084 80.6
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1707.6 989 85.4
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1704.5 989 85.7
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1699.1 990 84.8
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1697.2 999 84.3
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1697.2 986 85.6
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1691.8 990 85.2
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1690.6 991 84.5
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1680.2 990 83.9
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1678.3 985 84.6
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1676.0 988 84.3
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1674.8 989 83.3
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1674.4 989 83.3
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1673.3 998 83.4
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1672.5 986 84.0
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1672.1 1030 82.1
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1668.7 992 83.8
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1666.7 996 83.4
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1662.5 1016 82.1
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1661.0 990 83.2
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1659.4 991 83.5
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1656.7 990 83.1
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1649.4 1006 81.8
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1649.0 995 83.3
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1643.2 990 81.4
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1641.7 987 82.2
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1640.6 990 81.2
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1637.9 992 81.0
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1636.3 991 81.0
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1631.3 992 81.9
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1630.9 989 82.3
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1630.2 990 83.3
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1629.4 990 80.9
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1629.0 1002 79.9
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1627.8 991 80.4
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1627.8 992 81.9
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1627.5 1078 77.1
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1626.7 986 81.0
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1624.8 990 80.4
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1621.7 989 82.7
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1620.5 1027 81.4
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1619.8 992 80.3
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1618.2 990 80.1
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1614.4 992 81.2
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1613.2 984 81.1
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1611.7 1005 78.9
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1610.9 995 79.9
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1609.3 990 81.9
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1609.0 933 85.4
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1604.7 998 80.4
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1603.2 1005 78.6
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1600.1 1007 78.4
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1599.7 987 81.1
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1592.4 991 80.6
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1587.8 990 79.5
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1581.6 990 79.5
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1580.8 989 79.1
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1579.7 1017 79.4
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1565.1 938 83.7
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1563.5 1040 75.3
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1557.3 988 78.6
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1551.2 983 78.5
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1536.5 928 83.4
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1527.7 980 77.0
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1512.3 990 77.8
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1496.1 990 76.5
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1471.1 897 80.9
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1451.4 847 84.3
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1439.9 986 72.7
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1401.7 818 85.8
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1400.2 995 71.3
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1388.6 786 88.4
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1371.7 793 86.4
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1342.0 772 86.3
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1328.9 793 84.4
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1326.2 996 71.0
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1323.9 855 78.7
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1320.4 794 83.6
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1315.1 763 85.8
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1290.8 953 69.5
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1267.7 761 84.0
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1204.5 783 78.3
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1178.3 1004 61.1
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1172.5 991 60.1
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1154.8 763 77.7
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 5.9e-298 1027.7 648 81.3
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 6.1e-295 1017.7 612 82.0
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 6.1e-295 1017.7 988 53.4
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 2.9e-289 998.8 663 76.3
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 7.9e-287 990.7 791 63.2
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 5.2e-286 988.0 557 89.0
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.2e-258 897.1 574 78.2
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 3.6e-247 859.0 520 81.3
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 1.7e-244 850.1 612 68.5
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 1.1e-243 847.4 517 83.2
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 3.4e-205 719.5 419 82.3
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 1.1e-168 598.2 336 85.1
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 4.5e-157 559.7 336 82.7
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.0e-144 517.7 282 90.4
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 1.0e-124 452.2 1069 31.6
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 1.1e-118 432.2 249 86.3
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 3.1e-105 387.5 230 80.4
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 3.8e-103 380.6 1267 27.4
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 4.9e-103 380.2 231 77.9
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 1.4e-102 378.6 269 73.2
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 1.9e-102 378.3 1013 28.7
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 4.0e-97 360.5 204 86.3
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 2.4e-94 351.3 207 82.1
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 4.0e-89 334.0 231 70.6
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 1.8e-84 318.5 178 84.3
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.5e-83 315.5 198 78.8
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 8.4e-79 299.7 302 54.6
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.1e-75 289.3 211 69.2
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 9.4e-70 269.6 442 39.4
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 1.8e-68 265.4 153 81.0
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 5.1e-60 237.3 152 75.0
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 7.0e-57 226.9 127 81.9
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 1.8e-49 202.2 135 71.1
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 4.0e-44 184.5 120 74.2
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 7.0e-41 173.7 163 58.9
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 9.1e-41 173.3 175 58.3
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 9.4e-38 163.3 106 74.5
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 9.4e-38 163.3 129 64.3
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.2e-36 157.5 141 60.3
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 1.4e-33 149.4 88 80.7
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 8.6e-31 140.2 99 69.7
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.5e-30 137.5 73 94.5
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 1.5e-27 129.4 131 59.5
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 2.6e-27 128.6 127 59.8
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 2.4e-25 122.1 75 77.3
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 3.2e-25 121.7 75 81.3
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 7.0e-25 120.6 82 69.5
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 7.3e-22 110.5 80 78.8
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 6.2e-21 107.5 92 63.0
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.0e-20 106.7 91 63.7
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 4.4e-19 101.3 53 94.3
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 1.6e-16 92.8 87 52.9
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 6.0e-16 90.9 100 52.0
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 6.0e-16 90.9 54 77.8
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.0e-15 88.6 116 40.5
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 9.5e-14 83.6 233 24.9
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 5.8e-11 74.3 161 32.9
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.4e-09 69.7 48 58.3
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 5.6e-06 57.8 50 56.0
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 9.5e-06 57.0 61 52.5


User provided reference genes

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