Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 6.4e-227 790.4 399 100.0
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 1.7e-208 729.2 397 93.2
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 7.1e-202 707.2 398 89.7
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.6e-191 671.0 401 85.3
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.3e-190 669.8 403 84.6
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 5.3e-189 664.5 400 85.0
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 6.9e-189 664.1 398 84.9
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 9.9e-188 660.2 393 85.5
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 5.4e-186 654.4 393 83.2
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 1.6e-185 652.9 393 83.2
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.3e-184 649.8 414 81.4
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 3.0e-184 648.7 401 81.3
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 8.7e-184 647.1 392 82.1
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 1.1e-183 646.7 381 84.3
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 1.1e-183 646.7 393 83.0
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 1.5e-183 646.4 387 82.7
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.5e-183 646.4 401 81.8
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 2.5e-183 645.6 396 81.8
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 4.3e-183 644.8 387 82.9
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 5.6e-183 644.4 399 81.2
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 1.3e-182 643.3 394 82.5
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 1.6e-182 642.9 393 81.4
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 1.6e-182 642.9 386 83.9
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 4.8e-182 641.3 403 79.7
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 4.8e-182 641.3 393 81.2
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 8.1e-182 640.6 381 83.7
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 1.1e-181 640.2 397 80.9
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 1.1e-181 640.2 391 81.6
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.4e-181 639.8 388 81.4
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 1.4e-181 639.8 378 84.4
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 4.0e-181 638.3 379 83.9
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 4.0e-181 638.3 397 81.4
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 6.9e-181 637.5 397 80.4
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 6.9e-181 637.5 392 82.7
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 1.2e-180 636.7 382 83.0
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.2e-180 636.7 401 80.5
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.5e-180 636.3 397 80.4
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 2.0e-180 636.0 384 83.3
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 2.0e-180 636.0 382 83.2
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 2.6e-180 635.6 382 83.8
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 2.6e-180 635.6 396 80.3
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 5.8e-180 634.4 394 81.0
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 7.6e-180 634.0 379 83.6
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 1.0e-179 633.6 383 82.8
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.0e-179 633.6 378 84.1
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 1.0e-179 633.6 378 83.1
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 1.0e-179 633.6 396 80.8
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 1.3e-179 633.3 379 83.1
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.7e-179 632.9 378 83.6
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 2.9e-179 632.1 387 81.1
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 3.8e-179 631.7 384 82.3
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 4.9e-179 631.3 391 80.1
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 6.5e-179 630.9 387 81.7
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 6.5e-179 630.9 398 80.2
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 1.1e-178 630.2 392 81.6
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.9e-178 629.4 394 80.7
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 1.9e-178 629.4 395 79.2
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 2.5e-178 629.0 391 80.8
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 2.5e-178 629.0 378 83.9
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 4.2e-178 628.2 393 81.4
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 5.5e-178 627.9 378 82.8
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 7.1e-178 627.5 382 81.7
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 2.7e-177 625.5 388 81.4
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 4.6e-177 624.8 400 78.0
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 6.0e-177 624.4 381 81.4
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 1.0e-176 623.6 380 81.6
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.8e-176 622.9 388 79.9
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 2.3e-176 622.5 389 79.9
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 3.0e-176 622.1 395 78.5
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 3.9e-176 621.7 382 80.6
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 5.1e-176 621.3 403 76.7
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 6.7e-176 620.9 407 76.7
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 8.7e-176 620.5 431 74.5
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.1e-175 620.2 382 80.4
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.1e-175 620.2 392 78.8
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.1e-175 620.2 388 78.9
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 1.5e-175 619.8 388 79.6
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.5e-175 619.8 386 79.8
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.5e-175 619.8 386 79.8
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 1.5e-175 619.8 388 79.1
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 1.9e-175 619.4 395 79.0
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 2.5e-175 619.0 392 78.6
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 3.3e-175 618.6 389 78.4
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 9.6e-175 617.1 385 79.5
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 9.6e-175 617.1 379 81.5
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.3e-174 616.7 388 79.1
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 1.6e-174 616.3 392 78.3
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.6e-174 616.3 378 81.7
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 2.1e-174 615.9 392 78.3
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 2.1e-174 615.9 399 83.0
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.1e-174 615.9 382 80.1
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 2.8e-174 615.5 378 81.7
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 3.7e-174 615.1 401 78.1
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 3.7e-174 615.1 395 79.2
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 6.2e-174 614.4 388 79.1
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.1e-173 613.6 409 75.8
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.4e-173 613.2 421 73.4
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.4e-173 613.2 395 77.2
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 2.4e-173 612.5 382 80.1
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 4.0e-173 611.7 382 80.1
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 5.8e-172 607.8 418 74.2
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 3.8e-171 605.1 375 80.0
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 1.9e-170 602.8 434 71.7
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.2e-169 600.1 378 78.3
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 4.6e-169 598.2 381 79.3
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 2.5e-167 592.4 407 74.7
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 2.2e-166 589.3 388 75.8
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 5.3e-165 584.7 375 78.7
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 5.9e-164 581.3 400 71.8
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 8.8e-160 567.4 387 72.9
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 9.7e-159 563.9 379 73.1
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 9.7e-159 563.9 389 71.0
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 1.3e-158 563.5 394 71.1
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 4.2e-154 548.5 381 72.7
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 7.4e-151 537.7 329 82.4
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 7.0e-149 531.2 335 78.5
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.2e-148 530.4 331 79.2
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.9e-147 525.8 394 69.5
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 1.1e-146 523.9 364 72.8
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 5.5e-146 521.5 392 70.9
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 2.1e-145 519.6 388 69.8
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 1.4e-144 516.9 392 68.6
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 7.0e-141 504.6 355 72.4
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 7.0e-141 504.6 374 65.2
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 8.5e-139 497.7 292 84.6
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 3.2e-138 495.7 389 69.7
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 7.2e-138 494.6 382 69.9
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 8.0e-137 491.1 292 82.5
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 2.5e-130 469.5 343 70.3
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 7.0e-109 398.3 321 66.0
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 1.6e-105 387.1 265 75.5
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 3.8e-86 322.8 251 68.5
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 1.2e-79 301.2 222 69.4
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 8.4e-78 295.0 382 42.1
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 1.3e-75 287.7 156 91.0
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.5e-74 284.3 201 70.1
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 5.3e-72 275.8 390 40.0
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 4.2e-69 266.2 207 67.6
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.8e-67 260.8 380 38.7
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 4.5e-63 246.1 138 85.5
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 5.3e-56 222.6 146 74.0
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 8.4e-54 215.3 164 68.3
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 3.2e-53 213.4 300 45.7
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 6.7e-43 179.1 98 86.7
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 1.5e-39 167.9 95 87.4
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.1e-34 151.8 340 30.0
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 7.4e-34 149.1 81 87.7
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 4.5e-31 139.8 163 50.9
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 3.8e-30 136.7 89 77.5
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 2.1e-28 131.0 90 72.2
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 1.0e-27 128.6 74 83.8
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.7e-25 121.3 100 62.0
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 2.2e-25 120.9 100 63.0
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 4.5e-23 113.2 76 77.6
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 5.4e-16 89.7 55 81.8
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 7.0e-16 89.4 143 39.2
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 4.2e-13 80.1 77 59.7
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 1.4e-11 75.1 50 74.0
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.4e-11 75.1 41 80.5
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 1.8e-11 74.7 47 72.3
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 1.8e-11 74.7 43 76.7
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 4.0e-11 73.6 40 85.0
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 1.2e-10 72.0 41 87.8
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 1.8e-08 64.7 40 80.0
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 2.0e-07 61.2 35 77.1
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 2.9e-06 57.4 34 76.5


User provided reference genes

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