Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 2.1e-42 175.3 88 100.0
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 1.0e-12 76.6 42 85.7
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 1.4e-12 76.3 42 85.7
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 1.8e-12 75.9 42 83.3
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.8e-12 75.9 42 83.3
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.8e-12 75.9 42 83.3
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.8e-12 75.9 42 83.3
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.8e-12 75.9 42 83.3
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 1.8e-12 75.9 42 83.3
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 3.0e-12 75.1 40 87.5
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 3.9e-12 74.7 42 81.0
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 5.1e-12 74.3 38 89.5
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 5.1e-12 74.3 42 81.0
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 6.7e-12 73.9 42 83.3
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 6.7e-12 73.9 42 81.0
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 6.7e-12 73.9 42 81.0
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 6.7e-12 73.9 42 81.0
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 8.8e-12 73.6 42 78.6
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 8.8e-12 73.6 42 81.0
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 1.1e-11 73.2 41 82.9
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 1.1e-11 73.2 41 82.9
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 1.1e-11 73.2 41 82.9
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 1.1e-11 73.2 42 81.0
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 1.1e-11 73.2 41 82.9
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 1.1e-11 73.2 38 89.5
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 1.5e-11 72.8 41 80.5
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.5e-11 72.8 42 81.0
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 1.5e-11 72.8 42 78.6
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 1.5e-11 72.8 42 78.6
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 2.0e-11 72.4 42 76.2
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 2.0e-11 72.4 42 76.2
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 2.0e-11 72.4 42 81.0
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 2.0e-11 72.4 42 81.0
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.5e-11 72.0 42 78.6
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 2.5e-11 72.0 42 78.6
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 2.5e-11 72.0 42 73.8
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 2.5e-11 72.0 41 80.5
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 3.3e-11 71.6 39 84.6
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.3e-11 71.6 42 78.6
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 3.3e-11 71.6 42 78.6
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 4.3e-11 71.2 42 76.2
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 4.3e-11 71.2 41 82.9
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 4.3e-11 71.2 42 76.2
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 4.3e-11 71.2 41 78.0
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 5.7e-11 70.9 41 80.5
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 5.7e-11 70.9 41 80.5
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 5.7e-11 70.9 42 76.2
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 5.7e-11 70.9 42 76.2
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 5.7e-11 70.9 42 76.2
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 5.7e-11 70.9 42 76.2
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 5.7e-11 70.9 41 80.5
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 5.7e-11 70.9 42 78.6
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 5.7e-11 70.9 41 80.5
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 5.7e-11 70.9 42 73.8
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 5.7e-11 70.9 42 76.2
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 7.4e-11 70.5 41 78.0
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 7.4e-11 70.5 38 86.8
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 7.4e-11 70.5 42 76.2
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 7.4e-11 70.5 41 80.5
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 9.7e-11 70.1 42 78.6
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 9.7e-11 70.1 42 76.2
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 9.7e-11 70.1 42 78.6
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 9.7e-11 70.1 42 76.2
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 9.7e-11 70.1 42 76.2
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 9.7e-11 70.1 42 76.2
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 9.7e-11 70.1 42 76.2
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 9.7e-11 70.1 42 73.8
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 9.7e-11 70.1 42 76.2
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 1.3e-10 69.7 42 73.8
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 1.3e-10 69.7 42 76.2
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 1.7e-10 69.3 41 78.0
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 1.7e-10 69.3 39 82.1
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 1.7e-10 69.3 42 76.2
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 1.7e-10 69.3 42 76.2
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 2.2e-10 68.9 52 65.4
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 2.2e-10 68.9 42 76.2
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 2.2e-10 68.9 42 73.8
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 2.2e-10 68.9 49 69.4
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 2.2e-10 68.9 41 78.0
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 2.8e-10 68.6 42 76.2
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 2.8e-10 68.6 38 81.6
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 3.7e-10 68.2 46 73.9
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 3.7e-10 68.2 42 73.8
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 4.8e-10 67.8 39 82.1
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 4.8e-10 67.8 41 73.2
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 4.8e-10 67.8 41 75.6
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 6.3e-10 67.4 42 73.8
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 8.2e-10 67.0 41 73.2
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 8.2e-10 67.0 37 81.1
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 8.2e-10 67.0 41 75.6
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 1.1e-09 66.6 41 75.6
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 1.1e-09 66.6 39 79.5
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.4e-09 66.2 40 77.5
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 1.4e-09 66.2 42 69.0
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.4e-09 66.2 42 73.8
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 1.4e-09 66.2 41 75.6
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 1.4e-09 66.2 42 71.4
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 1.8e-09 65.9 42 71.4
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 1.8e-09 65.9 42 69.0
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 1.8e-09 65.9 42 69.0
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 1.8e-09 65.9 42 69.0
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 3.1e-09 65.1 42 69.0
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 3.1e-09 65.1 36 77.8
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 4.1e-09 64.7 42 69.0
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 4.1e-09 64.7 42 69.0
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 4.1e-09 64.7 42 69.0
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 4.1e-09 64.7 42 69.0
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 4.1e-09 64.7 42 69.0
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 4.1e-09 64.7 42 69.0
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 4.1e-09 64.7 42 69.0
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 4.1e-09 64.7 42 69.0
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 4.1e-09 64.7 42 69.0
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 5.3e-09 64.3 39 74.4
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 5.3e-09 64.3 41 73.2
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 6.9e-09 63.9 38 73.7
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 1.5e-08 62.8 37 75.7
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 2.0e-08 62.4 42 69.0
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 2.0e-08 62.4 35 85.7
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 2.6e-08 62.0 40 70.0
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 7.7e-08 60.5 42 71.4
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 7.7e-08 60.5 41 68.3
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.2e-07 58.9 31 87.1
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 2.2e-07 58.9 31 87.1
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 5.0e-07 57.8 33 75.8
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 8.5e-07 57.0 36 69.4
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 8.5e-07 57.0 33 78.8
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 3.2e-06 55.1 76 46.1


User provided reference genes

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