Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 7.3e-121 437.2 212 100.0
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 1.3e-101 373.2 200 91.5
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 2.7e-99 365.5 200 90.5
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 6.2e-96 354.4 200 85.5
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 8.1e-96 354.0 200 86.0
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 2.4e-95 352.4 200 86.0
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 3.1e-95 352.1 200 85.5
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 4.0e-95 351.7 200 85.0
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 4.0e-95 351.7 200 84.5
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 8.9e-95 350.5 200 84.5
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 8.9e-95 350.5 200 85.5
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.2e-94 350.1 200 83.5
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.5e-94 349.7 200 85.5
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 1.5e-94 349.7 200 84.5
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 1.5e-94 349.7 200 84.5
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 2.0e-94 349.4 200 84.5
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 2.0e-94 349.4 200 83.0
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 2.6e-94 349.0 200 83.5
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 4.4e-94 348.2 200 85.0
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 5.8e-94 347.8 200 84.0
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 7.6e-94 347.4 200 82.5
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 7.6e-94 347.4 200 83.0
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 7.6e-94 347.4 200 83.0
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 7.6e-94 347.4 200 82.5
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 1.3e-93 346.7 200 82.0
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 1.7e-93 346.3 200 81.5
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 2.2e-93 345.9 200 82.5
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 3.8e-93 345.1 200 83.0
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 3.8e-93 345.1 217 79.3
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 4.9e-93 344.7 200 82.0
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 4.9e-93 344.7 200 83.5
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 4.9e-93 344.7 200 81.5
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 6.4e-93 344.4 204 83.3
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 6.4e-93 344.4 200 83.5
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 8.4e-93 344.0 200 82.0
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 8.4e-93 344.0 200 83.0
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 1.1e-92 343.6 200 82.5
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 2.4e-92 342.4 200 82.5
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 3.2e-92 342.0 200 82.5
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 3.2e-92 342.0 200 81.5
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 4.2e-92 341.7 200 82.0
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 4.2e-92 341.7 200 81.0
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 5.4e-92 341.3 200 84.0
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 7.1e-92 340.9 200 80.0
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 7.1e-92 340.9 200 82.0
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 9.3e-92 340.5 200 81.5
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 9.3e-92 340.5 200 79.5
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 1.2e-91 340.1 200 81.0
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.6e-91 339.7 200 82.0
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 1.6e-91 339.7 200 81.5
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 1.6e-91 339.7 200 80.5
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 1.6e-91 339.7 200 82.0
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 2.1e-91 339.3 200 82.5
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.1e-91 339.3 200 80.0
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 2.1e-91 339.3 200 82.0
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 2.7e-91 339.0 200 82.5
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 3.5e-91 338.6 200 81.5
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 4.6e-91 338.2 200 80.5
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 4.6e-91 338.2 200 80.5
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 4.6e-91 338.2 199 80.9
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 4.6e-91 338.2 200 80.0
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 6.0e-91 337.8 200 80.5
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 7.8e-91 337.4 200 80.0
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 1.0e-90 337.0 200 80.0
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 1.0e-90 337.0 200 80.5
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.0e-90 337.0 200 80.0
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 1.3e-90 336.7 200 81.0
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 1.3e-90 336.7 200 83.5
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 1.3e-90 336.7 200 83.5
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 1.7e-90 336.3 200 80.5
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 1.7e-90 336.3 200 80.5
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 1.7e-90 336.3 201 82.1
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 1.7e-90 336.3 200 82.0
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 1.7e-90 336.3 200 80.5
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 2.3e-90 335.9 200 80.0
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 5.1e-90 334.7 200 79.5
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 5.1e-90 334.7 199 80.4
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 6.6e-90 334.3 200 79.5
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 1.5e-89 333.2 199 81.9
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 1.9e-89 332.8 200 79.0
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 1.9e-89 332.8 200 79.5
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 3.3e-89 332.0 219 73.5
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 3.3e-89 332.0 200 80.0
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 3.3e-89 332.0 200 79.5
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 4.3e-89 331.6 200 79.5
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 5.6e-89 331.3 200 80.0
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 7.3e-89 330.9 200 79.0
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 7.3e-89 330.9 200 79.0
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 1.3e-88 330.1 200 80.0
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 2.1e-88 329.3 200 78.5
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 2.1e-88 329.3 200 78.5
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 2.8e-88 328.9 200 78.5
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 2.8e-88 328.9 200 79.0
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 4.8e-88 328.2 194 82.5
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 4.8e-88 328.2 200 78.5
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 6.2e-88 327.8 200 78.0
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 8.1e-88 327.4 200 77.0
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 8.1e-88 327.4 200 78.0
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 8.1e-88 327.4 200 78.0
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 8.1e-88 327.4 200 78.0
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 1.4e-87 326.6 200 78.0
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 1.8e-87 326.2 200 77.5
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 3.1e-87 325.5 206 77.2
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 4.0e-87 325.1 208 76.0
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.0e-86 322.8 192 82.8
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 2.6e-86 322.4 200 77.0
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 3.4e-86 322.0 200 77.0
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.3e-85 320.1 231 70.1
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 3.8e-85 318.5 188 79.8
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.2e-83 313.5 199 79.4
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 1.2e-83 313.5 198 76.8
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 3.5e-83 312.0 188 80.9
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.4e-79 300.1 200 71.5
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.4e-79 300.1 200 71.5
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 9.9e-78 293.9 197 70.6
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 4.6e-75 285.0 200 68.5
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 3.9e-74 282.0 196 69.9
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 3.9e-74 282.0 200 66.5
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 3.3e-73 278.9 200 69.0
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 4.3e-73 278.5 200 69.0
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 3.5e-59 232.3 138 79.0
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 6.7e-58 228.0 201 56.2
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 2.6e-54 216.1 169 64.5
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 2.6e-54 216.1 200 53.5
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 3.8e-45 185.7 102 83.3
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 4.7e-43 178.7 105 79.0
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.6e-38 163.7 95 86.3
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 6.1e-35 151.8 92 73.9
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.8e-34 150.2 92 72.8
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 4.0e-34 149.1 105 67.6
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 1.0e-29 134.4 200 41.5
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 1.0e-29 134.4 105 61.9
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 2.1e-27 126.7 64 87.5
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 7.7e-22 108.2 133 42.1
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 7.7e-22 108.2 66 80.3
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 7.7e-22 108.2 56 85.7
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 3.4e-17 92.8 71 67.6
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 3.4e-17 92.8 71 67.6
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 9.2e-15 84.7 72 63.9
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 5.0e-13 79.0 43 79.1
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 8.9e-10 68.2 47 68.1
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 1.1e-07 61.2 33 78.8


User provided reference genes

Program Settings