Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 0.0e+00 1366.7 1078 100.0
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 3.4e-291 1005.4 1101 80.8
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 7.2e-241 838.2 1091 72.6
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 1.6e-240 837.0 1086 72.8
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 1.0e-231 807.7 1090 71.8
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 1.8e-212 743.8 751 71.9
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 1.7e-202 710.7 1095 67.3
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 1.9e-188 664.1 1023 69.1
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 1.7e-186 657.5 983 68.4
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 3.3e-185 653.3 1089 62.7
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 9.9e-182 641.7 1072 65.2
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 3.8e-181 639.8 1021 68.3
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 1.7e-178 630.9 1080 62.1
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 5.1e-178 629.4 1078 64.7
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 2.6e-166 590.5 1066 62.6
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 9.9e-166 588.6 1068 62.5
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 8.4e-165 585.5 1068 62.5
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 9.3e-164 582.0 1086 61.3
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 4.6e-163 579.7 1048 63.5
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 8.7e-162 575.5 742 60.2
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 1.5e-161 574.7 754 57.6
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 4.8e-160 569.7 753 57.6
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 1.2e-158 565.1 753 61.4
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 4.5e-158 563.1 1057 61.7
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 7.6e-158 562.4 1068 61.5
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 2.1e-155 554.3 740 61.1
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 6.0e-155 552.7 1094 57.8
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 1.1e-153 548.5 1095 61.3
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 6.9e-151 539.3 1062 60.6
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 1.0e-149 535.4 992 65.1
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 8.4e-149 532.3 750 56.7
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 1.1e-148 531.9 1064 59.8
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 1.6e-147 528.1 1063 59.0
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 1.9e-145 521.2 1066 59.3
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 2.5e-140 504.2 1092 60.0
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 3.2e-140 503.8 1061 58.6
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 2.2e-136 491.1 718 56.7
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 6.3e-136 489.6 722 56.9
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 1.1e-135 488.8 752 50.8
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 4.1e-135 486.9 1084 53.8
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 1.5e-134 485.0 753 55.9
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 2.6e-134 484.2 1074 51.6
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 1.5e-129 468.4 885 66.6
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 2.6e-129 467.6 736 56.1
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 8.2e-128 462.6 1072 57.2
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 4.1e-127 460.3 722 56.2
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 5.5e-124 449.9 648 59.6
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 4.8e-120 436.8 721 54.4
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 7.0e-119 433.0 720 54.9
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 7.7e-118 429.5 1062 56.5
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 8.5e-117 426.0 584 63.0
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 6.7e-114 416.4 725 52.0
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 2.6e-113 414.5 1074 56.5
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 7.2e-108 396.4 722 52.9
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 6.1e-107 393.3 722 53.2
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 3.0e-106 391.0 722 52.1
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 4.4e-105 387.1 722 51.7
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 5.7e-105 386.7 725 49.9
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 1.7e-104 385.2 723 53.4
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.4e-103 382.1 716 49.4
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 2.4e-103 381.3 735 49.8
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.6e-102 378.6 1056 54.2
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 5.9e-102 376.7 722 51.9
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 1.0e-101 375.9 653 47.8
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 1.0e-98 365.9 721 49.1
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 4.4e-97 360.5 723 51.9
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 4.9e-96 357.1 749 49.8
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 6.6e-93 346.7 682 57.8
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 1.1e-92 345.9 611 54.5
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 1.1e-92 345.9 611 54.5
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 1.5e-92 345.5 608 54.3
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 3.6e-91 340.9 552 56.9
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 3.6e-91 340.9 1008 41.7
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 1.0e-90 339.3 341 55.7
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 3.0e-90 337.8 426 73.2
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 1.7e-88 332.0 924 58.5
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 3.5e-86 324.3 720 46.7
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 5.6e-84 317.0 621 55.7
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 2.1e-83 315.1 609 55.8
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 2.6e-81 308.1 721 43.4
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 6.4e-80 303.5 719 29.9
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 2.4e-79 301.6 622 54.5
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 8.1e-75 286.6 542 52.0
MD16G1250300 Malus domestica HOM05D006842 ORTHO05D008908 2.8e-67 261.5 264 58.7
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 7.6e-65 253.4 339 43.7
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 7.1e-63 246.9 467 61.2
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 3.1e-58 231.5 338 37.3
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 2.6e-57 228.4 247 53.4
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 1.0e-53 216.5 154 74.0
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 2.1e-51 208.8 151 68.2
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 3.1e-50 204.9 339 40.4
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 7.6e-49 200.3 724 42.4
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 2.2e-48 198.7 385 51.7
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 7.6e-41 173.7 580 44.0
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 9.6e-36 156.8 661 43.7
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 8.2e-35 153.7 480 63.5
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 9.3e-31 140.2 212 38.7
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 1.1e-18 100.1 156 37.2
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 1.4e-18 99.8 448 60.5
MD16G1250500 Malus domestica HOM05D006842 ORTHO05D008908 1.5e-17 96.3 54 87.0
FAN07G1010 Fragaria x ananassa HOM05D006842 ORTHO05D008908 1.0e-16 93.6 104 51.0
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 1.7e-16 92.8 178 30.3
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 5.1e-13 81.3 244 28.3
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 1.1e-12 80.1 158 31.6
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 7.4e-12 77.4 244 26.6
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 7.4e-12 77.4 112 35.7
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 3.7e-11 75.1 180 27.2
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 4.8e-11 74.7 236 27.1
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 1.4e-10 73.2 156 32.1
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 3.1e-10 72.0 103 31.1
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 1.5e-09 69.7 229 26.2
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 5.9e-09 67.8 238 25.6
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 5.9e-09 67.8 153 31.4
CsaV3_3G035530 Cucumis sativus L. HOM05D000855 ORTHO05D008530 1.3e-08 66.6 227 25.6
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 2.9e-08 65.5 229 25.3
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 2.9e-08 65.5 229 24.9
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 3.8e-08 65.1 156 31.4
QL07p045308 Quercus lobata HOM05D000855 ORTHO05D008530 8.5e-08 63.9 229 24.5
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 1.1e-07 63.5 104 28.8
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 1.1e-07 63.5 104 28.8
FvH4_6g15290 Fragaria vesca HOM05D000855 ORTHO05D008530 1.4e-07 63.2 241 23.2
Sc20g0004090 Simmondsia chinensis HOM05D000855 ORTHO05D008530 1.4e-07 63.2 225 24.4
Solyc01g099530.3 Solanum lycopersicum HOM05D001281 ORTHO05D001139 1.4e-07 63.2 118 32.2
Prupe.2G007100 Prunus persica HOM05D007570 ORTHO05D009365 2.5e-07 62.4 107 28.0
Lj5g0021887 Lotus japonicus HOM05D000855 ORTHO05D008530 3.2e-07 62.0 229 24.5
TAR624G0084 Trochodendron aralioides HOM05D000029 ORTHO05D001395 4.2e-07 61.6 95 35.8
BcaB03g12377 Brassica carinata HOM05D000891 ORTHO05D000761 5.5e-07 61.2 282 23.8
Cc10_g12890 Coffea canephora HOM05D000001 ORTHO05D000003 5.5e-07 61.2 281 22.1
Ca_11448_v3 Cicer arietinum L. HOM05D000855 ORTHO05D008530 7.2e-07 60.8 238 23.9
AL1G45930 Arabidopsis lyrata HOM05D008483 ORTHO05D010726 9.4e-07 60.5 110 31.8
Psat6g233440 Pisum sativum HOM05D007202 ORTHO05D009125 1.2e-06 60.1 212 22.6
PSO017G1665 Papaver somniferum HOM05D015807 ORTHO05D011376 2.1e-06 59.3 260 21.2
TPR.G4127 Trifolium pratense HOM05D007202 ORTHO05D009125 2.1e-06 59.3 160 35.6
AagrBONN_evm.TU.Sc2ySwM_228.1649 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.7e-06 58.9 227 22.5
EL10Ac8g20438 Beta vulgaris HOM05D002986 ORTHO05D007611 3.6e-06 58.5 89 36.0
Ca_11225_v3 Cicer arietinum L. HOM05D007202 ORTHO05D009125 3.6e-06 58.5 213 29.6
Medtr1g114190 Medicago truncatula HOM05D000730 ORTHO05D009125 3.6e-06 58.5 160 34.4
Pp3c17_5040 Physcomitrium patens HOM05D000001 ORTHO05D000003 3.6e-06 58.5 233 24.9
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 4.7e-06 58.2 120 34.2
Sp2g25540 Schrenkiella parvula HOM05D003975 ORTHO05D009762 4.7e-06 58.2 100 29.0
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 4.7e-06 58.2 230 22.6
AUR62039460 Chenopodium quinoa HOM05D000001 ORTHO05D000003 6.1e-06 57.8 325 22.8
Duzib235G0042 Durio zibethinus HOM05D002986 ORTHO05D007611 6.1e-06 57.8 91 37.4
Gohir.A05G158800 Gossypium hirsutum HOM05D002986 ORTHO05D007611 6.1e-06 57.8 89 37.1
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 8.0e-06 57.4 103 31.1


User provided reference genes

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