Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 2.8e-163 578.6 289 100.0
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 2.2e-120 436.0 288 75.0
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 1.3e-115 420.2 293 73.7
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 2.8e-115 419.1 288 72.9
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.8e-115 419.1 288 73.3
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.8e-115 419.1 288 72.9
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.4e-114 416.8 288 72.2
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 5.3e-114 414.8 287 71.1
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.6e-113 412.5 288 71.5
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.3e-112 410.2 253 77.5
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 1.2e-105 387.1 282 68.8
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 1.5e-105 386.7 253 73.1
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 3.8e-104 382.1 290 67.9
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 1.1e-103 380.6 290 67.2
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 3.2e-103 379.0 286 67.8
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 1.6e-102 376.7 282 66.7
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 1.0e-101 374.0 292 65.1
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 1.8e-101 373.2 296 65.2
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 5.6e-100 368.2 251 70.1
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 1.3e-99 367.1 289 64.4
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 3.7e-99 365.5 285 63.2
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 3.1e-98 362.5 284 64.1
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 9.0e-98 360.9 285 63.9
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 1.2e-97 360.5 280 64.6
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 1.2e-97 360.5 226 76.1
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 1.2e-97 360.5 290 62.8
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 1.5e-97 360.1 284 64.4
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 1.5e-97 360.1 282 63.5
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 2.0e-97 359.8 284 63.4
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 2.0e-97 359.8 280 64.6
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 3.4e-97 359.0 276 65.2
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 1.0e-96 357.5 282 63.8
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 1.0e-96 357.5 283 64.0
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 5.5e-95 351.7 248 66.1
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 1.0e-93 347.4 281 60.9
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 3.0e-93 345.9 280 62.9
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 2.5e-92 342.8 282 63.5
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 3.3e-92 342.4 255 64.3
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 8.2e-91 337.8 289 59.5
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 3.1e-90 335.9 290 58.6
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 6.9e-90 334.7 258 64.0
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 1.5e-89 333.6 272 61.8
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 2.0e-89 333.2 287 56.4
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 1.3e-88 330.5 292 57.9
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 2.2e-88 329.7 277 60.3
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 5.0e-88 328.6 334 52.7
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 6.5e-88 328.2 263 61.6
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 8.5e-88 327.8 285 56.5
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 3.2e-87 325.9 250 65.6
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 9.4e-87 324.3 272 59.9
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 2.1e-86 323.2 265 60.0
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 3.6e-86 322.4 273 62.3
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 7.9e-86 321.2 245 62.4
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 1.0e-85 320.9 269 60.2
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 2.3e-85 319.7 290 57.9
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 3.0e-85 319.3 255 63.9
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 3.0e-85 319.3 249 63.5
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 5.1e-85 318.5 249 63.9
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 6.7e-85 318.2 290 57.9
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 1.1e-84 317.4 267 59.9
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 1.5e-84 317.0 287 55.4
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 2.0e-84 316.6 253 60.1
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 2.0e-84 316.6 253 60.1
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 2.0e-84 316.6 253 60.1
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 2.0e-84 316.6 273 57.9
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 3.3e-84 315.8 273 57.9
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 3.3e-84 315.8 272 58.1
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 7.4e-84 314.7 263 58.6
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 7.4e-84 314.7 290 57.9
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 9.7e-84 314.3 291 52.9
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 1.7e-83 313.5 244 63.5
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 1.7e-83 313.5 293 58.0
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 2.8e-83 312.8 252 62.3
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 2.8e-83 312.8 249 63.1
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 2.8e-83 312.8 249 63.1
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 4.8e-83 312.0 253 60.1
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 4.8e-83 312.0 253 59.7
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 4.8e-83 312.0 244 62.3
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 6.3e-83 311.6 253 59.7
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 1.8e-82 310.1 280 58.6
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 3.1e-82 309.3 294 55.8
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 9.1e-82 307.8 279 58.4
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 1.5e-81 307.0 219 71.2
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 2.0e-81 306.6 291 53.6
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 6.5e-80 301.6 240 60.4
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 1.1e-79 300.8 314 51.9
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 3.2e-79 299.3 283 54.4
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 1.0e-77 294.3 263 57.0
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 8.8e-77 291.2 292 52.1
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 1.4e-74 283.9 233 63.9
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 5.3e-74 282.0 257 54.9
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 3.8e-72 275.8 245 53.9
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 4.7e-70 268.9 248 54.8
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 1.4e-69 267.3 236 53.4
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 5.2e-69 265.4 233 54.1
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 8.8e-69 264.6 278 52.5
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 5.7e-68 261.9 233 52.8
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 3.5e-65 252.7 234 57.3
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 2.2e-64 250.0 291 49.1
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 5.0e-64 248.8 383 40.2
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 3.2e-63 246.1 287 49.5
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 5.5e-63 245.4 258 51.9
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 3.4e-60 236.1 286 49.0
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 4.1e-50 202.6 238 43.7
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 1.7e-48 197.2 245 44.9
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 1.7e-48 197.2 190 50.0
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.2e-43 180.3 169 56.2
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.4e-42 177.6 167 55.7
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 3.5e-41 172.9 235 42.1
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 1.4e-37 161.0 236 39.8
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 1.7e-35 154.1 137 59.1
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 1.1e-34 151.4 236 35.6
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 7.0e-34 148.7 99 63.6
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 7.0e-34 148.7 99 63.6
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 9.5e-31 138.3 146 49.3
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 8.0e-30 135.2 86 77.9
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 1.4e-29 134.4 227 37.4
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 2.6e-28 130.2 120 60.0
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 1.3e-24 117.9 76 81.6
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 6.6e-24 115.5 105 57.1
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 6.6e-24 115.5 122 50.8
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 7.3e-23 112.1 254 33.9
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 3.6e-22 109.8 244 30.7
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 1.4e-21 107.8 259 29.7
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 1.8e-21 107.5 67 71.6
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 7.6e-20 102.1 273 33.0
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 1.9e-15 87.4 66 57.6
Os10g0522500 Oryza sativa ssp. japonica HOM05D005908 ORTHO05D007235 2.8e-14 83.6 48 77.1
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 1.8e-13 80.9 41 87.8
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 8.9e-13 78.6 57 61.4


User provided reference genes

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