Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 1.6e-249 865.5 406 100.0
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 4.5e-204 714.5 409 80.7
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 2.4e-197 692.2 405 77.8
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 2.9e-195 685.3 405 77.5
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 2.9e-195 685.3 410 76.1
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 2.9e-195 685.3 414 79.5
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 6.5e-195 684.1 410 76.3
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 2.3e-176 622.5 369 76.2
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 1.6e-172 609.8 367 75.7
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 1.7e-171 606.3 367 75.2
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 1.1e-170 603.6 374 72.7
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 5.6e-170 601.3 429 66.2
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 4.7e-169 598.2 367 72.8
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 4.7e-169 598.2 364 74.7
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 6.2e-169 597.8 416 65.9
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 1.4e-168 596.7 374 72.2
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 2.3e-168 595.9 363 72.5
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 4.0e-168 595.1 399 67.9
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 4.0e-168 595.1 375 72.5
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 4.0e-168 595.1 374 71.7
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 5.2e-168 594.7 368 72.3
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 5.2e-168 594.7 367 73.6
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 6.8e-168 594.3 371 71.4
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 8.9e-168 594.0 363 74.9
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 8.9e-168 594.0 409 66.0
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 2.0e-167 592.8 362 72.4
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 4.4e-167 591.7 367 71.9
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 5.8e-167 591.3 412 65.8
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 6.4e-166 587.8 379 70.4
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 8.3e-166 587.4 456 62.1
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 8.3e-166 587.4 370 72.7
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 1.1e-165 587.0 387 69.0
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 1.9e-165 586.3 376 69.1
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 1.9e-165 586.3 411 65.7
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 2.4e-165 585.9 406 65.8
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 2.4e-165 585.9 365 71.5
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 4.1e-165 585.1 367 72.2
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 7.0e-165 584.3 383 69.7
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 1.6e-164 583.2 367 72.2
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 1.7e-163 579.7 390 68.7
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 2.3e-163 579.3 364 71.7
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 3.0e-163 578.9 364 70.3
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 3.9e-163 578.6 366 70.5
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 3.9e-163 578.6 390 68.5
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 5.0e-163 578.2 367 71.4
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 6.6e-163 577.8 364 72.0
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 8.6e-163 577.4 383 68.1
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 8.6e-163 577.4 367 69.8
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 5.6e-162 574.7 365 69.0
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 9.5e-162 573.9 370 69.7
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 2.8e-161 572.4 381 68.8
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 4.7e-161 571.6 405 66.2
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 6.2e-161 571.2 365 69.9
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 6.8e-160 567.8 390 67.7
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 8.9e-160 567.4 415 63.9
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 1.5e-159 566.6 388 66.8
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 4.9e-158 561.6 371 68.2
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 2.4e-157 559.3 383 64.8
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 4.1e-157 558.5 367 68.9
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 5.4e-157 558.1 365 69.0
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 5.4e-157 558.1 362 68.8
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 7.1e-157 557.8 364 67.6
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 9.2e-157 557.4 365 69.3
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 6.0e-156 554.7 369 68.8
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 1.0e-155 553.9 397 63.2
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 1.3e-155 553.5 378 66.9
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 1.7e-155 553.1 365 68.2
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 3.0e-155 552.4 370 67.0
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 3.3e-154 548.9 418 61.7
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 5.6e-154 548.1 365 67.9
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 2.1e-153 546.2 371 67.1
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 3.6e-153 545.4 371 66.6
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 3.6e-153 545.4 371 66.6
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 1.1e-152 543.9 364 68.4
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 3.1e-152 542.3 347 72.3
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 4.0e-152 542.0 327 74.9
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 1.2e-151 540.4 371 67.4
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 1.2e-151 540.4 367 67.0
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 2.6e-151 539.3 368 65.5
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 4.4e-151 538.5 367 65.1
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 5.8e-151 538.1 373 67.8
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 9.9e-151 537.3 371 67.1
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 4.9e-150 535.0 367 67.0
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 1.1e-149 533.9 422 60.4
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 1.6e-148 530.0 368 66.6
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 2.5e-146 522.7 366 65.6
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 4.3e-146 521.9 383 61.6
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 4.7e-145 518.5 365 66.3
CANSAT54G2413 Cannabis sativa HOM05D006474 ORTHO05D007994 1.5e-143 513.5 376 63.6
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 2.9e-142 509.2 321 71.3
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 2.1e-140 503.1 303 73.3
Psat4g014320 Pisum sativum HOM05D006474 ORTHO05D007994 3.5e-140 502.3 327 68.2
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 3.4e-135 485.7 293 72.7
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 1.3e-134 483.8 378 59.8
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 6.0e-132 474.9 366 57.7
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 1.3e-131 473.8 307 71.0
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 8.1e-129 464.5 368 55.7
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 7.6e-127 458.0 365 54.8
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 3.5e-124 449.1 400 51.2
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 7.4e-122 441.4 378 54.5
PSO170G4238 Papaver somniferum HOM05D006474 ORTHO05D007994 1.3e-118 430.6 298 66.1
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 1.0e-110 404.4 362 51.1
Cfa013469 Carpinus fangiana HOM05D006474 ORTHO05D007994 1.3e-105 387.5 277 67.5
Lju50A4G45 Lonicera japonica HOM05D006474 ORTHO05D007994 9.1e-104 381.3 259 68.7
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 6.1e-100 368.6 225 72.9
FAN22G2051 Fragaria x ananassa HOM05D006474 ORTHO05D007994 6.3e-97 358.6 361 54.0
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 1.6e-92 344.0 371 47.4
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 8.5e-86 321.6 399 44.9
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 1.3e-73 281.2 237 58.6
Phvul.010G082000 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 2.4e-64 250.4 186 62.4
PRCOL_00004194 Prasinoderma coloniale HOM05D006474 ORTHO05D007994 2.0e-55 220.7 465 31.6
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 2.7e-55 220.3 194 54.1
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 5.6e-53 212.6 231 42.9
SEGI_01125 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 5.2e-43 179.5 129 61.2
Phvul.011G131100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 7.6e-34 149.1 140 51.4
RcHm_v2.0_Chr4g0398881 Rosa chinensis HOM05D006474 ORTHO05D007994 1.5e-29 134.8 303 33.0
Gohir.A08G164600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 2.5e-21 107.5 86 54.7
Actinidia29962 Actinidia chinensis HOM05D006474 ORTHO05D007994 2.1e-20 104.4 90 55.6
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 3.1e-19 100.5 60 73.3
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 9.0e-19 99.0 61 73.8
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 9.0e-19 99.0 64 71.9
Oeu005633.1 Olea europaea HOM05D006474 ORTHO05D007994 1.8e-14 84.7 62 62.9
Lsat_1_v5_gn_3_77541 Lactuca sativa HOM05D006474 ORTHO05D007994 4.3e-13 80.1 51 66.7
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 3.7e-12 77.0 42 73.8
SEGI_25707 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 9.0e-11 72.4 65 50.8
Gohir.A06G077600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 4.9e-09 66.6 74 52.7


User provided reference genes

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