Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1186800 Malus domestica HOM05D006587 ORTHO05D008487 2.1e-178 629.0 348 100.0
MD16G1187700 Malus domestica HOM05D006587 ORTHO05D008487 1.0e-167 593.6 309 95.5
Prupe.1G154500 Prunus persica HOM05D006587 ORTHO05D008487 2.2e-159 565.8 311 90.0
FAN07G2036 Fragaria x ananassa HOM05D006587 ORTHO05D008487 4.2e-150 535.0 304 84.9
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 7.2e-150 534.3 304 84.2
RcHm_v2.0_Chr4g0417131 Rosa chinensis HOM05D006587 ORTHO05D008487 1.6e-149 533.1 347 79.8
PGR004G2885 Punica granatum HOM05D006587 ORTHO05D008487 3.0e-140 502.3 306 78.4
Thecc.04G226500 Theobroma cacao HOM05D006587 ORTHO05D008487 3.0e-140 502.3 307 81.4
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 3.9e-140 501.9 290 83.1
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 5.1e-140 501.5 305 80.3
GSVIVG01017920001 Vitis vinifera HOM05D006587 ORTHO05D008487 2.6e-139 499.2 306 80.4
CANSAT78G1956 Cannabis sativa HOM05D006587 ORTHO05D008487 1.3e-138 496.9 311 78.8
CSS0008441 Camellia sinensis var. sinensis HOM05D006587 ORTHO05D008487 7.7e-136 487.6 309 77.7
Rhsim04G0204300 Rhododendron simsii HOM05D006587 ORTHO05D008487 1.0e-135 487.3 308 76.6
Manes.03G181700 Manihot esculenta HOM05D006587 ORTHO05D008487 2.2e-135 486.1 310 78.4
Potri.008G149800 Populus trichocarpa HOM05D006587 ORTHO05D008487 3.8e-135 485.3 307 79.2
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 6.5e-135 484.6 303 79.5
Ciclev10005176m.g Citrus clementina HOM05D006587 ORTHO05D008487 6.5e-135 484.6 314 76.4
TAR362G0294 Trochodendron aralioides HOM05D006587 ORTHO05D008487 8.5e-135 484.2 305 76.4
CiPaw.02G094600 Carya illinoinensis HOM05D006587 ORTHO05D008487 2.5e-134 482.6 304 78.0
Eucgr.H03560 Eucalyptus grandis HOM05D006587 ORTHO05D008487 5.5e-134 481.5 304 77.0
Gorai.002G024100 Gossypium raimondii HOM05D006587 ORTHO05D008487 2.7e-133 479.2 304 76.0
Gohir.A01G023600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 3.6e-133 478.8 303 75.2
TWI73G1280 Tripterygium wilfordii HOM05D006587 ORTHO05D008487 4.7e-133 478.4 304 76.0
TAR633G1367 Trochodendron aralioides HOM05D006587 ORTHO05D008487 4.7e-133 478.4 313 75.7
Hma1.2p1_0511F.1_g168960 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 8.0e-133 477.6 303 77.6
Gohir.D01G021600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 1.8e-132 476.5 304 75.3
Actinidia23494 Actinidia chinensis HOM05D006587 ORTHO05D008487 4.0e-132 475.3 305 76.1
Atru.chr4.2522 Acer truncatum HOM05D006587 ORTHO05D008487 8.8e-132 474.2 310 75.2
THA.LOC104818820 Tarenaya hassleriana HOM05D006587 ORTHO05D008487 8.8e-132 474.2 303 75.2
Actinidia40165 Actinidia chinensis HOM05D006587 ORTHO05D008487 5.7e-131 471.5 301 77.4
TPR.G5533 Trifolium pratense HOM05D006587 ORTHO05D008487 2.2e-130 469.5 300 77.7
Cc03_g03390 Coffea canephora HOM05D006587 ORTHO05D008487 3.7e-130 468.8 302 74.2
ECA236G2554 Erigeron canadensis HOM05D006587 ORTHO05D008487 8.2e-130 467.6 304 77.0
Sc19g0004360 Simmondsia chinensis HOM05D006587 ORTHO05D008487 2.4e-129 466.1 306 74.2
Medtr1g105065 Medicago truncatula HOM05D006587 ORTHO05D008487 7.0e-129 464.5 300 77.0
VMungo0720G0184 Vigna mungo HOM05D006587 ORTHO05D008487 1.2e-128 463.8 300 75.7
ClCG05G005300 Citrullus lanatus HOM05D006587 ORTHO05D008487 1.6e-128 463.4 303 76.9
Lsat_1_v5_gn_9_80941 Lactuca sativa HOM05D006587 ORTHO05D008487 3.5e-128 462.2 297 75.8
MELO3C006549.2 Cucumis melo HOM05D006587 ORTHO05D008487 5.9e-128 461.5 307 75.2
Thhalv10013731m.g Eutrema salsugineum HOM05D006587 ORTHO05D008487 1.3e-127 460.3 303 74.6
Sed0010167 Sechium edule HOM05D006587 ORTHO05D008487 1.3e-127 460.3 309 76.1
CsaV3_3G013530 Cucumis sativus L. HOM05D006587 ORTHO05D008487 1.7e-127 459.9 307 74.9
BraA10t44108Z Brassica rapa HOM05D006587 ORTHO05D008487 2.9e-127 459.1 303 74.9
Nitab4.5_0000144g0120 Nicotiana tabacum HOM05D006587 ORTHO05D008487 2.9e-127 459.1 307 73.3
Lalb_Chr06g0164781 Lupinus albus HOM05D006587 ORTHO05D008487 3.8e-127 458.8 300 74.7
AL6G30780 Arabidopsis lyrata HOM05D006587 ORTHO05D008487 5.0e-127 458.4 303 74.3
Carub.0006s1763 Capsella rubella HOM05D006587 ORTHO05D008487 5.0e-127 458.4 303 74.3
Glyma.20G143100 Glycine max HOM05D006587 ORTHO05D008487 6.5e-127 458.0 300 75.3
AT5G19300 Arabidopsis thaliana HOM05D006587 ORTHO05D008487 1.1e-126 457.2 303 74.6
BolC9t58560H Brassica oleracea HOM05D006587 ORTHO05D008487 1.1e-126 457.2 304 74.3
HanXRQChr13g0400281 Helianthus annuus HOM05D006587 ORTHO05D008487 1.1e-126 457.2 302 75.2
BcaB08g36587 Brassica carinata HOM05D006587 ORTHO05D008487 1.9e-126 456.4 302 74.5
A10p20380 Brassica napus HOM05D006587 ORTHO05D008487 1.9e-126 456.4 300 75.3
Ca_10966_v3 Cicer arietinum L. HOM05D006587 ORTHO05D008487 1.9e-126 456.4 300 74.3
Sp6g25120 Schrenkiella parvula HOM05D006587 ORTHO05D008487 1.9e-126 456.4 301 74.4
Migut.N00169 Erythranthe guttata HOM05D006587 ORTHO05D008487 2.5e-126 456.1 308 72.4
arahy.Tifrunner.gnm1.ann1.G9UJER Arachis hypogaea HOM05D006587 ORTHO05D008487 3.2e-126 455.7 298 75.2
arahy.Tifrunner.gnm1.ann1.HZWC9V Arachis hypogaea HOM05D006587 ORTHO05D008487 3.2e-126 455.7 298 75.2
BcaC04g18580 Brassica carinata HOM05D006587 ORTHO05D008487 4.2e-126 455.3 304 74.0
C09p56970 Brassica napus HOM05D006587 ORTHO05D008487 4.2e-126 455.3 304 74.0
Lj5g0006939 Lotus japonicus HOM05D006587 ORTHO05D008487 7.2e-126 454.5 300 73.3
Sabra08G0113900 Salix brachista HOM05D006587 ORTHO05D008487 9.4e-126 454.1 286 79.7
MSTRG.24750 Avicennia marina HOM05D006587 ORTHO05D008487 1.2e-125 453.8 300 74.7
PSO302G0285 Papaver somniferum HOM05D006587 ORTHO05D008487 1.6e-125 453.4 302 73.2
Psat6g209880 Pisum sativum HOM05D006587 ORTHO05D008487 1.6e-125 453.4 302 75.5
Aa31LG11G10390 Aethionema arabicum HOM05D006587 ORTHO05D008487 4.7e-125 451.8 303 72.9
CARHR193670 Cardamine hirsuta HOM05D006587 ORTHO05D008487 6.1e-125 451.4 299 74.2
PSO170G4636 Papaver somniferum HOM05D006587 ORTHO05D008487 1.4e-124 450.3 302 72.8
CAN.G69.11 Capsicum annuum HOM05D006587 ORTHO05D008487 3.0e-124 449.1 306 72.9
Solyc01g079710.3 Solanum lycopersicum HOM05D006587 ORTHO05D008487 1.2e-123 447.2 306 71.9
Sopen01g031480 Solanum pennellii HOM05D006587 ORTHO05D008487 1.5e-123 446.8 306 71.9
DCAR_002398 Daucus carota HOM05D006587 ORTHO05D008487 3.4e-123 445.7 306 72.5
Potri.010G091400 Populus trichocarpa HOM05D006587 ORTHO05D008487 7.5e-123 444.5 307 73.6
Phvul.007G053900 Phaseolus vulgaris HOM05D006587 ORTHO05D008487 3.7e-122 442.2 303 71.6
SalBow5G0644 Salvia bowleyana HOM05D006587 ORTHO05D008487 4.1e-121 438.7 305 73.1
MBI17_g12493_MAGBIO Magnolia biondii HOM05D006587 ORTHO05D008487 9.1e-121 437.6 281 72.2
PGSC0003DMG400008999 Solanum tuberosum HOM05D006587 ORTHO05D008487 2.7e-120 436.0 340 65.6
Haze_00934 Corylus avellana HOM05D006587 ORTHO05D008487 1.3e-119 433.7 303 72.6
Peaxi162Scf01336g00122 Petunia axillaris HOM05D006587 ORTHO05D008487 9.4e-118 427.6 304 70.1
Dinv44504 Davidia involucrata HOM05D006587 ORTHO05D008487 1.4e-116 423.7 245 81.2
HPP92_010726 Vanilla planifolia HOM05D006587 ORTHO05D008487 1.4e-116 423.7 302 68.2
Ah.13g074000 Amaranthus hybridus HOM05D006587 ORTHO05D008487 8.8e-116 421.0 306 66.7
Hma1.2p1_0511F.1_g168950 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 9.8e-115 417.5 286 71.3
EL10As3g23313 Beta vulgaris HOM05D006587 ORTHO05D008487 2.2e-114 416.4 302 65.9
Dinv38415 Davidia involucrata HOM05D006587 ORTHO05D008487 1.8e-113 413.3 263 77.2
Aqoxy2G03329 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 4.1e-113 412.1 307 66.4
Os04g0244500 Oryza sativa ssp. japonica HOM05D006587 ORTHO05D008487 2.7e-112 409.5 296 68.9
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 7.7e-112 407.9 304 69.7
SGA_v2.0_scaffold10G05110 Striga asiatica HOM05D006587 ORTHO05D008487 2.8e-109 399.4 291 70.1
Nitab4.5_0000180g0030 Nicotiana tabacum HOM05D006587 ORTHO05D008487 7.8e-104 381.3 307 63.8
Cpa.g.sc147.29 Carica papaya HOM05D006587 ORTHO05D008487 1.7e-103 380.2 235 78.7
Lj3A741G38 Lonicera japonica HOM05D006587 ORTHO05D008487 8.0e-101 371.3 290 65.9
QL06p003535 Quercus lobata HOM05D006587 ORTHO05D008487 2.9e-98 362.8 242 72.7
AUR62043415 Chenopodium quinoa HOM05D006587 ORTHO05D008487 8.3e-98 361.3 262 64.9
ATR0626G244 Amborella trichopoda HOM05D006587 ORTHO05D008487 2.3e-95 353.2 259 68.7
Sabra10G0051900 Salix brachista HOM05D006587 ORTHO05D008487 3.9e-95 352.4 300 60.3
Pp3c7_20660 Physcomitrium patens HOM05D006587 ORTHO05D008487 3.7e-90 335.9 298 55.4
SMO364G0578 Selaginella moellendorffii HOM05D006587 ORTHO05D008487 1.9e-89 333.6 306 56.5
Mapoly0049s0075 Marchantia polymorpha HOM05D006587 ORTHO05D008487 1.6e-88 330.5 305 52.1
Duzib151G0305 Durio zibethinus HOM05D006587 ORTHO05D008487 7.3e-86 321.6 306 58.8
unitig_899.g15640 Utricularia gibba HOM05D006587 ORTHO05D008487 7.3e-86 321.6 303 58.4
Aqoxy2G03328 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 1.5e-78 297.4 306 56.2
FvH4_4g14960 Fragaria vesca HOM05D006587 ORTHO05D008487 1.1e-73 281.2 168 81.0
PRCOL_00002662 Prasinoderma coloniale HOM05D006587 ORTHO05D008487 5.1e-71 272.3 326 45.1
AUR62038173 Chenopodium quinoa HOM05D006587 ORTHO05D008487 1.1e-70 271.2 277 50.9
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 4.3e-70 269.2 266 54.9
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 6.2e-69 265.4 237 58.6
Zm00001eb373340 Zea mays HOM05D006587 ORTHO05D008487 2.4e-68 263.5 206 65.5
CDE05G0907 Ceratophyllum demersum HOM05D006587 ORTHO05D008487 2.2e-58 230.3 175 68.0
Oeu040660.1 Olea europaea HOM05D006587 ORTHO05D008487 4.0e-52 209.5 141 74.5
Cfa024389 Carpinus fangiana HOM05D006587 ORTHO05D008487 5.1e-47 192.6 368 35.3
COL.COLO4_06205 Corchorus olitorius HOM05D006587 ORTHO05D008487 5.1e-47 192.6 190 55.8
Glyma.10G250600 Glycine max HOM05D006587 ORTHO05D008487 2.5e-46 190.3 118 78.0
AagrBONN_evm.TU.Sc2ySwM_340.504 Anthoceros agrestis HOM05D006587 ORTHO05D008487 3.3e-46 189.9 185 55.7
Lalb_Chr02g0144661 Lupinus albus HOM05D006587 ORTHO05D008487 3.8e-42 176.4 183 55.2
Cre16.g670617 Chlamydomonas reinhardtii HOM05D006587 ORTHO05D008487 1.1e-36 158.3 280 36.4
QL06p003531 Quercus lobata HOM05D006587 ORTHO05D008487 1.1e-28 131.7 71 87.3
Lalb_Chr02g0144651 Lupinus albus HOM05D006587 ORTHO05D008487 8.0e-16 89.0 62 64.5
Lsat_1_v5_gn_9_31900 Lactuca sativa HOM05D006587 ORTHO05D011576 1.5e-14 84.7 83 47.0
SEGI_15408 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 5.3e-12 76.3 45 71.1
arahy.Tifrunner.gnm1.ann1.Y836FI Arachis hypogaea HOM05D000158 ORTHO05D000197 7.7e-11 72.4 49 67.3
TAR362G0446 Trochodendron aralioides HOM05D006587 ORTHO05D008487 1.0e-10 72.0 43 88.4
PSO151G0052 Papaver somniferum HOM05D004736 ORTHO05D030424 5.0e-10 69.7 72 54.2
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 8.5e-10 68.9 103 37.9
Gorai.012G092500 Gossypium raimondii HOM05D006587 ORTHO05D008487 9.4e-09 65.5 47 66.0
Gorai.004G106600 Gossypium raimondii HOM05D006587 ORTHO05D008487 1.6e-08 64.7 40 80.0
SEGI_20820 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 4.0e-07 60.1 38 84.2


User provided reference genes

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