Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 0.0e+00 1236.9 655 100.0
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 0.0e+00 1146.0 655 93.0
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 7.1e-308 1060.1 658 86.6
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 8.5e-261 903.7 673 75.0
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 5.0e-253 877.9 674 73.9
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.5e-249 866.3 693 71.9
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 7.4e-249 864.0 695 71.8
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 8.2e-248 860.5 693 71.7
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 7.0e-247 857.4 665 71.0
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 1.8e-242 842.8 662 71.3
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 4.4e-241 838.2 659 70.0
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 1.0e-237 827.0 664 69.7
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.0e-237 827.0 664 69.1
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 8.5e-237 823.9 658 69.0
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.1e-236 823.5 681 67.3
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 2.7e-235 818.9 661 68.8
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 3.6e-235 818.5 684 67.3
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.4e-234 816.6 684 67.3
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.3e-234 815.8 654 68.3
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 5.2e-234 814.7 660 68.5
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 6.8e-234 814.3 657 68.5
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.2e-233 813.5 662 68.3
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 2.0e-233 812.8 655 68.7
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 2.8e-232 808.9 663 66.4
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 3.7e-232 808.5 662 67.4
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.4e-231 805.8 655 68.4
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 9.1e-231 803.9 662 68.9
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 2.7e-230 802.4 652 68.1
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 1.9e-228 796.2 655 67.0
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 1.9e-228 796.2 663 65.9
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 9.4e-228 793.9 653 68.1
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 1.2e-227 793.5 663 65.0
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 2.7e-227 792.3 672 66.8
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 4.7e-227 791.6 657 67.7
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 8.0e-227 790.8 652 67.0
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 1.0e-226 790.4 693 63.8
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 1.5e-225 786.6 650 67.1
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 4.4e-225 785.0 651 66.8
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 3.1e-223 778.9 651 66.7
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 3.1e-223 778.9 692 64.3
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 7.0e-223 777.7 651 66.4
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 2.3e-221 772.7 653 65.1
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 5.0e-221 771.5 661 65.7
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 6.6e-221 771.2 664 66.7
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 1.1e-220 770.4 664 66.7
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 1.5e-220 770.0 654 66.4
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 9.5e-220 767.3 646 65.3
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 5.2e-218 761.5 582 69.8
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 8.9e-218 760.8 659 65.3
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 9.8e-217 757.3 664 63.6
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 2.9e-216 755.7 601 67.1
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 2.9e-216 755.7 670 63.1
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 4.9e-216 755.0 569 69.4
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 6.4e-216 754.6 658 64.3
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 1.4e-215 753.4 657 63.5
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 1.4e-215 753.4 676 62.1
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 3.2e-215 752.3 662 63.7
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 5.9e-214 748.0 673 62.7
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 1.7e-213 746.5 671 64.4
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 2.3e-210 736.1 661 62.6
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 2.3e-210 736.1 659 63.6
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 4.0e-210 735.3 660 62.1
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 8.3e-208 727.6 648 62.8
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 1.2e-206 723.8 644 62.3
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 2.7e-206 722.6 657 61.6
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 3.0e-205 719.2 648 61.7
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 3.0e-205 719.2 660 62.7
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 3.9e-205 718.8 648 61.4
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 3.9e-205 718.8 651 61.4
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 5.0e-205 718.4 645 61.7
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 6.6e-205 718.0 648 61.4
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 1.9e-204 716.5 647 62.6
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 2.5e-204 716.1 644 62.6
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 4.3e-204 715.3 647 62.4
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 9.5e-204 714.1 648 61.9
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 1.2e-203 713.8 651 61.1
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 1.8e-202 709.9 623 63.1
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 5.8e-201 704.9 661 63.7
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 7.5e-201 704.5 648 60.5
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 3.7e-200 702.2 667 60.4
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 1.9e-199 699.9 651 60.7
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 1.9e-199 699.9 647 61.4
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 1.5e-196 690.3 650 60.9
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.6e-195 685.6 647 61.8
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 8.9e-194 681.0 541 66.5
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 2.6e-193 679.5 643 59.4
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 1.7e-189 666.8 617 64.0
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.1e-188 664.1 675 58.4
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 5.6e-188 661.8 655 58.3
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 2.4e-186 656.4 668 58.5
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 5.8e-185 651.7 697 57.2
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 1.7e-184 650.2 654 58.0
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 1.1e-183 647.5 634 58.2
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 3.0e-181 639.4 637 58.4
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 9.6e-180 634.4 516 65.1
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 8.1e-179 631.3 666 59.0
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 4.9e-176 622.1 660 55.9
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 1.2e-174 617.5 697 57.0
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 3.6e-171 605.9 647 54.7
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 4.2e-167 592.4 673 51.3
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 6.5e-160 568.5 443 71.1
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 9.7e-140 501.5 538 53.7
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 2.4e-138 496.9 588 46.9
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 1.0e-133 481.5 634 44.8
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 2.8e-131 473.4 732 42.5
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 2.0e-121 440.7 375 64.5
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 4.5e-121 439.5 665 42.4
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.6e-113 414.5 307 73.9
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 7.7e-113 412.1 673 44.3
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 4.1e-106 389.8 427 56.2
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 4.7e-102 376.3 643 37.2
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 4.0e-101 373.2 552 45.7
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 6.6e-96 355.9 425 49.2
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 9.5e-95 352.1 336 58.6
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.0e-88 332.0 317 57.4
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.9e-87 327.8 250 69.2
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 1.9e-79 301.2 312 52.6
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 9.9e-68 262.3 654 30.4
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 7.3e-63 246.1 717 28.2
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.6e-54 218.4 152 69.1
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 4.0e-53 213.8 255 50.2
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 5.3e-53 213.4 190 65.8
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 3.4e-52 210.7 249 51.0
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 3.1e-45 187.6 616 27.4
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 4.5e-44 183.7 249 47.8
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 7.6e-44 183.0 249 47.4
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 3.7e-38 164.1 177 53.7
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 5.9e-36 156.8 115 70.4
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 4.6e-33 147.1 145 54.5
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 1.0e-32 146.0 99 74.7
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 1.5e-31 142.1 98 68.4
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 8.2e-30 136.3 236 40.7
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 2.5e-26 124.8 146 49.3
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.0e-24 119.4 615 27.3
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.8e-24 118.6 184 40.2
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 1.3e-22 112.5 302 29.5
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 2.5e-18 98.2 169 42.0
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 7.9e-17 93.2 88 61.4
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 6.7e-16 90.1 81 60.5
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.1e-15 89.4 120 45.8
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 9.7e-15 86.3 142 37.3
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 9.7e-15 86.3 142 37.3
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 9.7e-15 86.3 142 37.3
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 2.2e-14 85.1 142 36.6
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 2.2e-14 85.1 142 36.6
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 2.8e-14 84.7 142 36.6
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 6.3e-14 83.6 118 43.2
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 9.1e-13 79.7 99 53.5
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 1.1e-10 72.8 111 45.9
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 1.2e-09 69.3 45 68.9
Psat1g126080 Pisum sativum HOM05D004772 ORTHO05D032275 3.7e-06 57.8 72 50.0
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 4.8e-06 57.4 52 46.2
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 4.8e-06 57.4 52 46.2


User provided reference genes

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