Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 1.3e-196 689.5 343 100.0
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 1.1e-137 493.8 386 66.3
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 1.3e-130 470.3 384 63.5
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 5.3e-121 438.3 375 61.1
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 4.5e-120 435.3 376 60.6
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 4.9e-119 431.8 376 60.1
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 1.1e-118 430.6 380 59.5
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 3.2e-118 429.1 370 61.1
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.2e-118 429.1 370 61.1
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 9.3e-118 427.6 372 60.5
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 4.9e-111 405.2 393 54.5
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 1.4e-110 403.7 384 56.0
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 1.9e-110 403.3 377 56.2
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 2.1e-109 399.8 384 55.2
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 4.6e-109 398.7 378 55.6
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 6.0e-109 398.3 377 56.0
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 6.0e-109 398.3 377 56.0
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 1.8e-108 396.7 373 55.5
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 3.0e-108 396.0 379 54.9
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 3.0e-108 396.0 377 55.4
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 5.1e-108 395.2 373 55.2
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 1.1e-107 394.0 375 55.2
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 1.1e-107 394.0 374 55.3
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 2.5e-107 392.9 379 56.7
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 2.5e-107 392.9 388 55.2
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 4.3e-107 392.1 380 55.3
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 4.3e-107 392.1 385 54.3
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 5.7e-107 391.7 378 54.2
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 3.7e-106 389.0 380 55.0
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 8.2e-106 387.9 376 55.9
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 1.4e-105 387.1 374 56.1
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 6.9e-105 384.8 384 53.4
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 9.0e-105 384.4 376 55.3
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 4.5e-104 382.1 379 54.4
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 4.5e-104 382.1 387 53.2
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 1.0e-103 380.9 383 52.2
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 1.3e-103 380.6 381 52.0
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 1.1e-102 377.5 384 53.4
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 1.1e-102 377.5 378 55.0
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 1.4e-102 377.1 388 53.1
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 1.4e-102 377.1 367 54.5
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 5.5e-102 375.2 367 55.3
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 5.5e-102 375.2 383 53.5
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 1.2e-101 374.0 392 52.0
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 2.1e-101 373.2 380 53.2
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 4.6e-101 372.1 400 52.0
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 6.1e-101 371.7 383 53.0
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 1.4e-100 370.5 377 53.6
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.4e-100 370.5 389 52.2
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 1.8e-100 370.2 393 52.4
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 2.3e-100 369.8 373 53.9
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 3.0e-100 369.4 367 53.4
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 3.0e-100 369.4 376 50.8
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 3.0e-100 369.4 396 52.0
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 6.7e-100 368.2 367 52.9
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 1.1e-99 367.5 373 53.4
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.5e-99 367.1 395 51.4
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.5e-99 367.1 372 53.0
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 2.0e-99 366.7 370 53.5
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 2.0e-99 366.7 373 53.6
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 3.3e-99 365.9 371 51.5
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 3.3e-99 365.9 371 52.6
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 3.3e-99 365.9 371 52.6
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 7.4e-99 364.8 393 50.6
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 9.7e-99 364.4 385 51.2
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 9.7e-99 364.4 369 53.1
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 1.7e-98 363.6 387 50.9
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 1.7e-98 363.6 381 50.9
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 2.2e-98 363.2 372 53.5
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 2.2e-98 363.2 381 51.4
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 3.7e-98 362.5 379 52.2
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 6.3e-98 361.7 379 51.5
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 8.2e-98 361.3 369 53.1
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 8.2e-98 361.3 373 52.3
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 1.1e-97 360.9 377 52.3
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.1e-97 360.9 368 53.3
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 1.1e-97 360.9 377 50.9
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 1.8e-97 360.1 380 54.2
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 2.4e-97 359.8 381 52.0
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 3.1e-97 359.4 385 51.7
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 4.1e-97 359.0 385 51.4
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 4.1e-97 359.0 383 52.2
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 4.1e-97 359.0 387 51.7
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 6.9e-97 358.2 383 50.9
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 6.9e-97 358.2 385 50.6
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 6.9e-97 358.2 307 61.6
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 1.5e-96 357.1 370 51.6
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 2.6e-96 356.3 380 51.3
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 3.4e-96 355.9 379 52.0
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.0e-95 354.4 388 49.2
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 1.0e-95 354.4 382 51.8
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.3e-95 354.0 370 53.2
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 2.2e-95 353.2 376 50.8
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 6.5e-95 351.7 379 52.5
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 1.9e-94 350.1 383 51.2
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 3.2e-94 349.4 368 52.4
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 5.5e-94 348.6 379 50.1
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 7.2e-94 348.2 301 60.1
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 1.6e-93 347.1 379 51.2
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 1.6e-93 347.1 374 50.5
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 3.6e-93 345.9 374 50.3
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 4.7e-93 345.5 382 50.5
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 5.1e-92 342.0 372 51.6
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 8.8e-92 341.3 389 48.1
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 8.2e-90 334.7 383 49.6
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 2.4e-89 333.2 371 49.6
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 9.1e-89 331.3 297 57.2
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 2.6e-88 329.7 365 50.7
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 5.9e-88 328.6 355 51.5
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.3e-87 327.4 375 48.5
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 1.3e-87 327.4 378 47.6
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 1.4e-86 323.9 222 73.4
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 2.8e-82 309.7 286 57.3
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 4.8e-82 308.9 375 45.3
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 1.8e-81 307.0 339 52.5
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 4.1e-81 305.8 334 49.4
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 4.1e-81 305.8 380 45.3
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 9.1e-81 304.7 391 44.8
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 1.6e-80 303.9 382 44.8
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 3.5e-80 302.8 362 46.1
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 4.5e-80 302.4 369 44.4
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 7.7e-80 301.6 379 44.6
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 5.5e-78 295.4 368 47.6
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 2.1e-77 293.5 368 44.8
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 2.1e-77 293.5 381 43.6
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 3.6e-77 292.7 374 46.5
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 1.2e-75 287.7 384 43.5
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 5.7e-75 285.4 368 45.4
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 9.7e-75 284.6 372 45.2
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 6.3e-74 282.0 380 44.2
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 6.3e-74 282.0 367 44.7
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 2.2e-71 273.5 378 42.3
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 5.0e-71 272.3 367 42.5
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 1.1e-70 271.2 391 43.0
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 1.9e-70 270.4 380 41.6
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 2.5e-70 270.0 372 43.0
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 2.3e-68 263.5 367 42.8
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 4.0e-68 262.7 324 47.2
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 1.1e-62 244.6 330 43.6
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 9.5e-62 241.5 390 39.0
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 1.6e-61 240.7 283 43.8
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 3.6e-61 239.6 390 39.0
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 5.2e-60 235.7 287 44.9
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 6.8e-60 235.3 390 38.2
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 8.9e-60 235.0 228 51.8
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 1.5e-59 234.2 384 39.8
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 1.5e-59 234.2 332 42.2
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 8.3e-58 228.4 294 43.2
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 4.5e-56 222.6 172 58.7
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 7.8e-56 221.9 382 37.7
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 3.3e-54 216.5 232 47.8
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 1.1e-49 201.4 200 51.0
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.3e-42 177.9 297 37.0
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 2.4e-41 173.7 113 72.6
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 1.1e-36 158.3 293 39.6
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 6.6e-31 139.0 152 46.1
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 6.6e-31 139.0 152 46.1
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 4.3e-30 136.3 89 73.0
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 5.6e-30 136.0 145 47.6
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 5.6e-30 136.0 145 47.6
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 5.6e-30 136.0 145 47.6
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 4.7e-29 132.9 89 70.8
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 1.5e-27 127.9 76 81.6
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 4.4e-27 126.3 162 46.9
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 3.6e-21 106.7 205 35.1
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 3.6e-21 106.7 205 35.1
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 3.6e-21 106.7 205 35.1
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 5.3e-20 102.8 71 67.6
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 7.6e-19 99.0 148 43.9
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 3.2e-17 93.6 54 81.5
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 7.1e-17 92.4 54 81.5
MD05G1024100 Malus domestica HOM05D003673 ORTHO05D017143 7.3e-14 82.4 44 88.6
GSVIVG01013079001 Vitis vinifera HOM05D003673 ORTHO05D004764 3.2e-09 67.0 43 74.4
FAN21G3810 Fragaria x ananassa HOM05D003673 ORTHO05D025527 7.1e-09 65.9 81 49.4
FAN25G1183 Fragaria x ananassa HOM05D003673 ORTHO05D025527 7.1e-09 65.9 81 49.4
FAN10G3644 Fragaria x ananassa HOM05D003673 ORTHO05D025527 1.2e-08 65.1 81 48.1
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 6.0e-08 62.8 44 61.4
FvH4_6g00910 Fragaria vesca HOM05D003673 ORTHO05D025527 6.0e-08 62.8 75 48.0
FAN18G2996 Fragaria x ananassa HOM05D003673 ORTHO05D025527 7.9e-08 62.4 81 48.1
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.8e-07 61.2 119 32.8
Dinv21956 Davidia involucrata HOM05D003673 ORTHO05D004764 3.0e-07 60.5 85 45.9
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 7.4e-06 55.8 32 78.1


User provided reference genes

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