Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1132600 Malus domestica HOM05D006687 ORTHO05D008379 2.2e-38 161.8 79 100.0
FAN12G1590 Fragaria x ananassa HOM05D006687 ORTHO05D008379 8.7e-27 123.2 70 85.7
MD16G1196600 Malus domestica HOM05D006687 ORTHO05D008379 1.1e-26 122.9 70 85.7
Prupe.1G016800 Prunus persica HOM05D006687 ORTHO05D008379 1.1e-26 122.9 70 85.7
FvH4_4g16100 Fragaria vesca HOM05D006687 ORTHO05D008379 3.3e-26 121.3 70 84.3
FAN07G2338 Fragaria x ananassa HOM05D006687 ORTHO05D008379 3.3e-26 121.3 70 84.3
FAN22G0081 Fragaria x ananassa HOM05D006687 ORTHO05D008379 3.3e-26 121.3 70 84.3
RcHm_v2.0_Chr4g0415641 Rosa chinensis HOM05D006687 ORTHO05D008379 3.3e-26 121.3 70 84.3
MD13G1196100 Malus domestica HOM05D006687 ORTHO05D008379 4.3e-26 120.9 70 84.3
FAN17G0837 Fragaria x ananassa HOM05D006687 ORTHO05D008379 1.2e-25 119.4 70 82.9
Manes.15G030400 Manihot esculenta HOM05D006687 ORTHO05D008379 1.2e-25 119.4 70 81.4
ClCG05G005070 Citrullus lanatus HOM05D006687 ORTHO05D008379 1.6e-25 119.0 70 81.4
MELO3C006520.2 Cucumis melo HOM05D006687 ORTHO05D008379 1.6e-25 119.0 70 81.4
CsaV3_3G013130 Cucumis sativus L. HOM05D006687 ORTHO05D008379 1.6e-25 119.0 70 81.4
Potri.008G155000 Populus trichocarpa HOM05D006687 ORTHO05D008379 1.6e-25 119.0 70 81.4
CANSAT78G1673 Cannabis sativa HOM05D006687 ORTHO05D008379 2.8e-25 118.2 70 81.4
Cpa.g.sc58.86 Carica papaya HOM05D006687 ORTHO05D008379 2.8e-25 118.2 70 80.0
COL.COLO4_21511 Corchorus olitorius HOM05D006687 ORTHO05D008379 6.2e-25 117.1 70 80.0
Nn1g02367 Nelumbo nucifera HOM05D006687 ORTHO05D008379 6.2e-25 117.1 70 84.3
Duzib052G0918 Durio zibethinus HOM05D006687 ORTHO05D008379 1.1e-24 116.3 70 78.6
Gohir.A02G033400 Gossypium hirsutum HOM05D006687 ORTHO05D008379 1.1e-24 116.3 70 78.6
Gohir.D02G039900 Gossypium hirsutum HOM05D006687 ORTHO05D008379 1.1e-24 116.3 70 78.6
Gorai.005G044200 Gossypium raimondii HOM05D006687 ORTHO05D008379 1.1e-24 116.3 70 78.6
Sabra08G0118100 Salix brachista HOM05D006687 ORTHO05D008379 1.1e-24 116.3 70 80.0
Thecc.04G234600 Theobroma cacao HOM05D006687 ORTHO05D008379 1.1e-24 116.3 70 78.6
Sed0004090 Sechium edule HOM05D006687 ORTHO05D008379 1.8e-24 115.5 70 80.0
Aa31LG8G9120 Aethionema arabicum HOM05D006687 ORTHO05D008379 2.4e-24 115.2 70 78.6
BcaB06g26371 Brassica carinata HOM05D006687 ORTHO05D008379 2.4e-24 115.2 70 78.6
BcaC05g28033 Brassica carinata HOM05D006687 ORTHO05D008379 2.4e-24 115.2 70 78.6
A05p26080 Brassica napus HOM05D006687 ORTHO05D008379 2.4e-24 115.2 70 78.6
C05p40480 Brassica napus HOM05D006687 ORTHO05D008379 2.4e-24 115.2 70 78.6
BolC5t32790H Brassica oleracea HOM05D006687 ORTHO05D008379 2.4e-24 115.2 70 78.6
BraA05t21491Z Brassica rapa HOM05D006687 ORTHO05D008379 2.4e-24 115.2 70 78.6
Thhalv10020820m.g Eutrema salsugineum HOM05D006687 ORTHO05D008379 2.4e-24 115.2 70 78.6
Sp3g20360 Schrenkiella parvula HOM05D006687 ORTHO05D008379 2.4e-24 115.2 70 78.6
THA.LOC104808559 Tarenaya hassleriana HOM05D006687 ORTHO05D008379 3.1e-24 114.8 70 78.6
Actinidia23525 Actinidia chinensis HOM05D006687 ORTHO05D008379 4.0e-24 114.4 70 82.9
Actinidia40137 Actinidia chinensis HOM05D006687 ORTHO05D008379 4.0e-24 114.4 70 82.9
Sed0025649 Sechium edule HOM05D006687 ORTHO05D008379 4.0e-24 114.4 70 80.0
AT3G22590 Arabidopsis thaliana HOM05D006687 ORTHO05D008379 5.2e-24 114.0 70 77.1
arahy.Tifrunner.gnm1.ann1.S3TICT Arachis hypogaea HOM05D006687 ORTHO05D008379 6.9e-24 113.6 70 81.4
arahy.Tifrunner.gnm1.ann1.SVC7LK Arachis hypogaea HOM05D006687 ORTHO05D008379 6.9e-24 113.6 70 81.4
Cc03_g04010 Coffea canephora HOM05D006687 ORTHO05D008379 6.9e-24 113.6 70 81.4
TWI53G1185 Tripterygium wilfordii HOM05D006687 ORTHO05D008379 6.9e-24 113.6 70 75.7
Atru.chr4.2438 Acer truncatum HOM05D006687 ORTHO05D008379 9.0e-24 113.2 70 77.1
Aqoxy2G03421 Aquilegia oxysepala HOM05D006687 ORTHO05D008379 9.0e-24 113.2 70 81.4
EL10Ac3g06489 Beta vulgaris HOM05D006687 ORTHO05D008379 1.2e-23 112.8 70 77.1
DCAR_024171 Daucus carota HOM05D006687 ORTHO05D008379 1.2e-23 112.8 70 82.9
Glyma.11G008100 Glycine max HOM05D006687 ORTHO05D008379 1.5e-23 112.5 70 81.4
Phvul.002G042300 Phaseolus vulgaris HOM05D006687 ORTHO05D008379 1.5e-23 112.5 70 81.4
QL06p001782 Quercus lobata HOM05D006687 ORTHO05D008379 1.5e-23 112.5 70 81.4
CARHR098480 Cardamine hirsuta HOM05D006687 ORTHO05D008379 2.0e-23 112.1 70 77.1
Lj3A732T77 Lonicera japonica HOM05D006687 ORTHO05D008379 2.0e-23 112.1 70 81.4
Nitab4.5_0000321g0170 Nicotiana tabacum HOM05D006687 ORTHO05D008379 2.0e-23 112.1 70 78.6
CSS0001912 Camellia sinensis var. sinensis HOM05D006687 ORTHO05D008379 2.6e-23 111.7 70 80.0
CSS0011956 Camellia sinensis var. sinensis HOM05D006687 ORTHO05D008379 2.6e-23 111.7 70 80.0
AUR62033670 Chenopodium quinoa HOM05D006687 ORTHO05D008379 2.6e-23 111.7 70 77.1
AUR62034718 Chenopodium quinoa HOM05D006687 ORTHO05D008379 2.6e-23 111.7 70 77.1
Ciclev10005124m.g Citrus clementina HOM05D006687 ORTHO05D008379 2.6e-23 111.7 70 75.7
Potri.010G085500 Populus trichocarpa HOM05D006687 ORTHO05D008379 2.6e-23 111.7 70 75.7
Ca_24424_v3 Cicer arietinum L. HOM05D006687 ORTHO05D008379 3.4e-23 111.3 70 80.0
Haze_00870 Corylus avellana HOM05D006687 ORTHO05D008379 3.4e-23 111.3 70 78.6
AL3G36890 Arabidopsis lyrata HOM05D006687 ORTHO05D008379 4.4e-23 110.9 70 75.7
LjContig00222g0006058 Lotus japonicus HOM05D006687 ORTHO05D008379 4.4e-23 110.9 70 78.6
VMungo1215G0895 Vigna mungo HOM05D006687 ORTHO05D008379 4.4e-23 110.9 70 80.0
TAR636G0889 Trochodendron aralioides HOM05D006687 ORTHO05D008379 5.8e-23 110.5 70 80.0
Ah.13g071710 Amaranthus hybridus HOM05D006687 ORTHO05D008379 7.6e-23 110.2 70 74.3
Hund10579 Selenicereus undatus HOM05D006687 ORTHO05D008379 7.6e-23 110.2 70 75.7
PSO210G5270 Papaver somniferum HOM05D006687 ORTHO05D008379 9.9e-23 109.8 70 77.1
PSO761G0513 Papaver somniferum HOM05D006687 ORTHO05D008379 9.9e-23 109.8 70 77.1
Psat2g189880 Pisum sativum HOM05D006687 ORTHO05D008379 9.9e-23 109.8 70 78.6
GSVIVG01018007001 Vitis vinifera HOM05D006687 ORTHO05D008379 9.9e-23 109.8 70 78.6
CAN.G231.10 Capsicum annuum HOM05D006687 ORTHO05D008379 1.3e-22 109.4 70 77.1
Lalb_Chr05g0211161 Lupinus albus HOM05D006687 ORTHO05D008379 1.3e-22 109.4 70 77.1
Oeu042805.1 Olea europaea HOM05D006687 ORTHO05D008379 1.3e-22 109.4 70 78.6
Eucgr.H03443 Eucalyptus grandis HOM05D006687 ORTHO05D008379 1.7e-22 109.0 70 78.6
SalBow2G2000 Salvia bowleyana HOM05D006687 ORTHO05D008379 1.7e-22 109.0 70 78.6
SGA_v2.0_scaffold191G40505 Striga asiatica HOM05D006687 ORTHO05D008379 1.7e-22 109.0 70 78.6
TPR.G37926 Trifolium pratense HOM05D006687 ORTHO05D008379 2.2e-22 108.6 70 77.1
Rhsim04G0200900 Rhododendron simsii HOM05D006687 ORTHO05D008379 2.9e-22 108.2 70 77.1
Sc13g0004520 Simmondsia chinensis HOM05D006687 ORTHO05D008379 3.8e-22 107.8 70 74.3
Sc13g0006070 Simmondsia chinensis HOM05D006687 ORTHO05D008379 3.8e-22 107.8 70 74.3
Solyc06g054080.3 Solanum lycopersicum HOM05D006687 ORTHO05D008379 3.8e-22 107.8 70 75.7
Sopen06g019240 Solanum pennellii HOM05D006687 ORTHO05D008379 3.8e-22 107.8 70 75.7
PGSC0003DMG400016264 Solanum tuberosum HOM05D006687 ORTHO05D008379 3.8e-22 107.8 70 75.7
Medtr5g006960 Medicago truncatula HOM05D006687 ORTHO05D008379 6.4e-22 107.1 70 75.7
Carub.0003s2274 Capsella rubella HOM05D006687 ORTHO05D008379 8.4e-22 106.7 70 72.9
Migut.G00354 Erythranthe guttata HOM05D006687 ORTHO05D008379 1.4e-21 105.9 70 75.7
CDE05G2168 Ceratophyllum demersum HOM05D006687 ORTHO05D008379 1.9e-21 105.5 72 76.4
ATR0665G006 Amborella trichopoda HOM05D006687 ORTHO05D008379 2.4e-21 105.1 73 75.3
Hma1.2p1_1572F.1_g291370 Hydrangea macrophylla HOM05D006687 ORTHO05D008379 1.2e-20 102.8 70 74.3
Hma1.2p1_1572F.1_g291380 Hydrangea macrophylla HOM05D006687 ORTHO05D008379 1.2e-20 102.8 70 74.3
Hma1.2p1_2201F.1_g317030 Hydrangea macrophylla HOM05D006687 ORTHO05D008379 1.2e-20 102.8 70 74.3
PGR004G1051 Punica granatum HOM05D006687 ORTHO05D008379 1.2e-20 102.8 70 72.9
Lsat_1_v5_gn_6_103081 Lactuca sativa HOM05D006687 ORTHO05D008379 2.1e-20 102.1 69 75.4
CiPaw.01G168400 Carya illinoinensis HOM05D006687 ORTHO05D008379 2.7e-20 101.7 70 77.1
Peaxi162Scf00131g00127 Petunia axillaris HOM05D006687 ORTHO05D008379 6.0e-20 100.5 71 71.8
Dinv44552 Davidia involucrata HOM05D006687 ORTHO05D008379 1.3e-19 99.4 70 68.6
ECA246G3355 Erigeron canadensis HOM05D006687 ORTHO05D008379 1.3e-19 99.4 69 72.5
HanXRQChr11g0327791 Helianthus annuus HOM05D006687 ORTHO05D008379 1.3e-19 99.4 69 73.9
TAR365G0539 Trochodendron aralioides HOM05D006687 ORTHO05D008379 2.3e-19 98.6 69 73.9
unitig_749.g14072 Utricularia gibba HOM05D006687 ORTHO05D008379 2.3e-19 98.6 71 73.2
HPP92_018620 Vanilla planifolia HOM05D006687 ORTHO05D008379 2.5e-18 95.1 71 69.0
SEGI_38182 Sequoiadendron giganteum HOM05D006687 ORTHO05D008379 1.1e-13 79.7 70 54.3
MD09G1133500 Malus domestica HOM05D006687 ORTHO05D008379 7.9e-12 73.6 41 80.5
Os03g0664700 Oryza sativa ssp. japonica HOM05D006687 ORTHO05D008379 1.9e-10 68.9 74 50.0
Zm00001eb217880 Zea mays HOM05D006687 ORTHO05D008379 1.3e-09 66.2 73 46.6
Pp3c6_19770 Physcomitrium patens HOM05D006687 ORTHO05D008379 4.8e-09 64.3 70 54.3
Mapoly0001s0040 Marchantia polymorpha HOM05D006687 ORTHO05D008379 5.3e-08 60.8 70 45.7
AagrBONN_evm.TU.Sc2ySwM_344.3801 Anthoceros agrestis HOM05D006687 ORTHO05D008379 9.0e-08 60.1 70 44.3
CBR_g48312 Chara braunii HOM05D006687 ORTHO05D008379 2.0e-07 58.9 70 41.4


User provided reference genes

Program Settings