Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 7.7e-155 550.4 276 100.0
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 1.8e-143 512.7 276 93.5
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 5.3e-140 501.1 276 92.0
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 1.7e-138 496.1 276 90.6
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 6.5e-130 467.6 247 93.5
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 1.9e-129 466.1 276 85.5
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 9.4e-129 463.8 277 85.6
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 2.1e-128 462.6 276 83.7
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 3.6e-128 461.8 277 83.4
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 8.0e-128 460.7 278 83.5
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 1.4e-127 459.9 277 83.0
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 1.8e-127 459.5 277 81.6
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 1.8e-127 459.5 276 83.0
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 2.6e-126 455.7 277 82.3
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 4.4e-126 454.9 279 83.5
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 5.7e-126 454.5 277 83.0
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 5.7e-126 454.5 277 83.0
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 1.3e-125 453.4 277 80.9
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.8e-125 452.2 255 90.2
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 4.8e-125 451.4 277 80.5
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 4.8e-125 451.4 277 82.7
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 8.3e-125 450.7 277 82.3
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 2.4e-124 449.1 277 81.2
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 7.0e-124 447.6 276 81.5
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.2e-123 446.8 276 79.0
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.2e-123 446.8 276 79.7
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 1.2e-123 446.8 298 77.2
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 1.2e-123 446.8 293 79.5
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.6e-123 446.4 276 80.1
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.7e-122 443.0 277 79.8
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 2.3e-122 442.6 307 75.6
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 3.8e-122 441.8 283 80.6
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 5.0e-122 441.4 268 80.6
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 6.5e-122 441.0 276 79.3
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 1.1e-121 440.3 276 79.0
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 1.5e-121 439.9 276 78.6
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 4.2e-121 438.3 277 79.1
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 5.5e-121 438.0 276 78.3
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 5.5e-121 438.0 276 78.3
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 7.2e-121 437.6 277 79.4
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 1.2e-120 436.8 275 77.1
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 1.6e-120 436.4 276 79.3
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 2.1e-120 436.0 276 79.3
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 2.8e-120 435.6 276 77.9
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 4.7e-120 434.9 276 76.4
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 4.7e-120 434.9 268 80.6
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 6.1e-120 434.5 329 71.4
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 8.0e-120 434.1 271 76.8
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 1.0e-119 433.7 278 78.4
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 1.4e-119 433.3 277 78.3
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 1.4e-119 433.3 278 77.7
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 3.0e-119 432.2 276 75.7
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 3.0e-119 432.2 276 77.9
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 5.2e-119 431.4 267 84.6
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 8.9e-119 430.6 278 78.8
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 1.2e-118 430.3 279 77.8
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 1.5e-118 429.9 276 76.8
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 2.6e-118 429.1 276 76.1
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 4.4e-118 428.3 271 77.5
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 4.4e-118 428.3 278 78.1
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 7.5e-118 427.6 273 76.2
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 7.5e-118 427.6 275 76.0
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 7.5e-118 427.6 276 75.7
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 9.8e-118 427.2 275 76.0
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 1.3e-117 426.8 277 77.3
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 1.3e-117 426.8 279 76.7
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 2.8e-117 425.6 270 76.7
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 8.3e-117 424.1 273 75.1
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 1.1e-116 423.7 276 75.0
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 5.4e-116 421.4 272 76.1
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 9.2e-116 420.6 274 75.2
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 3.5e-115 418.7 274 75.2
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 3.5e-115 418.7 274 75.2
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 5.9e-115 417.9 285 75.4
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 1.3e-114 416.8 276 77.2
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 2.3e-114 416.0 277 74.0
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 5.0e-114 414.8 279 74.6
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 8.6e-114 414.1 276 76.1
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 5.6e-113 411.4 290 73.4
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 9.5e-113 410.6 284 74.3
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 4.0e-111 405.2 299 69.2
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.6e-110 402.5 255 82.7
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 2.6e-110 402.5 276 73.2
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 3.4e-110 402.1 267 75.3
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 4.4e-110 401.7 299 68.6
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 3.7e-109 398.7 278 70.5
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 3.7e-109 398.7 286 71.7
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 1.1e-108 397.1 278 70.1
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 1.8e-108 396.4 277 74.4
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 5.4e-108 394.8 276 72.8
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 7.8e-107 391.0 270 71.1
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 1.1e-105 387.1 276 69.6
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 3.3e-105 385.6 299 67.2
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 2.1e-104 382.9 278 69.4
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 6.8e-103 377.9 288 66.7
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 1.3e-101 373.6 277 67.1
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 4.1e-100 368.6 277 69.7
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 5.4e-100 368.2 266 69.9
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 3.5e-99 365.5 266 69.9
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 2.3e-98 362.8 258 69.4
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 1.9e-97 359.8 270 69.6
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 4.7e-96 355.1 266 68.0
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 1.4e-95 353.6 276 64.9
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.8e-95 353.2 244 71.3
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 7.5e-94 347.8 264 69.7
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 3.7e-93 345.5 273 62.6
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.1e-92 344.0 237 75.1
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 1.1e-92 344.0 273 64.5
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 1.3e-90 337.0 248 64.5
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 6.6e-90 334.7 251 64.1
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 1.9e-89 333.2 202 79.2
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 4.9e-85 318.5 274 59.9
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 4.1e-84 315.5 271 59.0
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 3.5e-83 312.4 225 66.7
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 1.0e-82 310.8 190 82.1
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 7.3e-81 304.7 247 61.5
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 6.2e-80 301.6 279 63.4
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 1.2e-78 297.4 188 80.9
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 5.4e-76 288.5 230 67.4
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 1.4e-71 273.9 219 64.4
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 2.2e-61 240.0 285 48.4
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 6.4e-61 238.4 246 52.4
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 6.2e-56 221.9 285 42.1
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 1.6e-51 207.2 120 81.7
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 4.3e-49 199.1 121 80.2
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 2.6e-46 189.9 120 74.2
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 7.7e-46 188.3 272 40.4
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 8.5e-45 184.9 272 39.7
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 5.5e-44 182.2 122 74.6
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 6.3e-40 168.7 88 93.2
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-36 157.9 142 59.2
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 1.4e-36 157.5 118 66.1
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 3.6e-27 126.3 91 69.2
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 8.2e-24 115.2 82 70.7
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 1.2e-22 111.3 75 72.0
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 1.0e-21 108.2 228 29.8
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 8.5e-21 105.1 82 67.1
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 3.6e-19 99.8 236 31.8
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 8.0e-19 98.6 258 29.1
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 3.0e-18 96.7 118 52.5
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 2.6e-17 93.6 228 27.2
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 8.3e-16 88.6 203 27.6
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 7.0e-15 85.5 69 60.9
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 1.6e-14 84.3 56 67.9
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 5.9e-14 82.4 51 70.6
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 8.5e-13 78.6 47 74.5
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 1.9e-12 77.4 87 43.7
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 7.2e-12 75.5 82 51.2
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 8.0e-11 72.0 308 24.0
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 1.0e-10 71.6 308 24.0
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 1.2e-09 68.2 41 75.6
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 3.4e-09 66.6 40 72.5
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 5.7e-09 65.9 79 49.4
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 2.2e-08 63.9 232 22.8


User provided reference genes

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