Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 5.8e-248 860.9 609 100.0
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 1.8e-204 716.5 423 84.6
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 2.4e-169 599.7 439 72.0
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 2.4e-140 503.4 433 62.1
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 3.1e-140 503.1 433 62.1
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 4.5e-139 499.2 433 61.4
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 4.2e-113 412.9 432 51.2
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 1.2e-112 411.4 425 52.5
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 2.6e-107 393.7 357 54.3
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 3.5e-107 393.3 378 51.9
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 5.9e-107 392.5 429 50.3
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 1.0e-106 391.7 416 51.2
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 1.3e-106 391.3 384 53.9
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 1.9e-105 387.5 439 47.8
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 3.0e-103 380.2 339 54.3
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 1.2e-102 378.3 412 50.0
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 2.2e-101 374.0 430 46.5
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 2.2e-101 374.0 422 48.6
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 2.2e-101 374.0 411 48.4
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 3.7e-101 373.2 427 48.5
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 1.4e-100 371.3 412 47.3
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 5.3e-100 369.4 411 47.7
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 9.1e-100 368.6 421 47.5
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 7.7e-99 365.5 440 44.5
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 1.0e-98 365.2 425 46.8
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 1.9e-97 360.9 418 45.2
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 3.2e-97 360.1 426 46.2
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 2.1e-96 357.5 421 45.6
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 2.1e-96 357.5 425 45.9
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 6.1e-96 355.9 419 45.8
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 1.0e-95 355.1 403 46.7
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 2.6e-94 350.5 405 45.4
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 4.4e-94 349.7 403 47.1
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 5.7e-94 349.4 442 45.7
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 1.1e-92 345.1 441 45.1
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 2.4e-92 344.0 328 52.4
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 5.0e-90 336.3 443 42.7
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 1.1e-89 335.1 414 43.5
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 1.5e-89 334.7 394 45.2
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 3.6e-88 330.1 343 50.1
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 3.6e-88 330.1 423 45.6
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 8.0e-88 328.9 416 45.7
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 1.4e-87 328.2 431 42.2
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 8.8e-87 325.5 367 44.7
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 3.7e-85 320.1 374 45.2
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 1.2e-83 315.1 436 45.0
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 5.0e-82 309.7 385 43.9
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 6.6e-82 309.3 420 41.0
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 6.6e-82 309.3 414 42.0
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 3.6e-80 303.5 422 40.3
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 4.7e-80 303.1 347 47.8
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 2.3e-79 300.8 394 42.6
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 3.4e-78 297.0 406 41.9
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 4.4e-78 296.6 412 42.7
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 9.8e-78 295.4 412 42.0
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 1.7e-77 294.7 421 41.8
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 6.4e-77 292.7 320 48.4
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 6.4e-77 292.7 328 48.5
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 4.6e-75 286.6 315 49.2
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 1.3e-74 285.0 244 57.0
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 2.3e-74 284.3 350 42.3
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 3.9e-74 283.5 424 41.7
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 6.6e-74 282.7 321 48.9
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 6.6e-74 282.7 406 42.1
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 8.6e-74 282.3 308 49.0
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 2.1e-72 277.7 273 53.5
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 5.2e-71 273.1 407 40.0
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 3.7e-69 266.9 404 39.1
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 3.7e-69 266.9 404 39.1
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 4.9e-69 266.5 329 42.9
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 1.1e-68 265.4 329 42.6
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 3.2e-68 263.8 437 37.1
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 1.2e-67 261.9 317 42.6
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 6.0e-67 259.6 375 37.6
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 2.3e-66 257.7 351 40.5
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 3.3e-65 253.8 302 44.7
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 6.8e-63 246.1 397 35.8
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 7.5e-62 242.7 199 59.3
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 7.5e-62 242.7 260 50.8
Nitab4.5_0000129g0410 Nicotiana tabacum HOM05D007280 ORTHO05D009108 2.2e-61 241.1 206 57.3
Nitab4.5_0003882g0050 Nicotiana tabacum HOM05D007280 ORTHO05D009108 2.9e-61 240.7 204 58.3
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 5.4e-60 236.5 328 41.8
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 3.5e-59 233.8 343 40.8
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 7.8e-59 232.6 313 41.2
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 1.0e-58 232.3 315 40.6
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 2.8e-56 224.2 333 37.5
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 2.8e-56 224.2 294 42.9
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 4.7e-56 223.4 234 47.4
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 3.1e-55 220.7 236 46.2
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 4.1e-52 210.3 318 39.0
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 4.1e-52 210.3 360 36.7
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 3.0e-50 204.1 344 38.1
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 5.1e-50 203.4 322 39.1
Ciclev10006779m.g Citrus clementina HOM05D007280 ORTHO05D009108 1.2e-48 198.7 197 52.8
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 3.6e-48 197.2 205 51.2
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 4.7e-48 196.8 278 37.4
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 7.3e-41 172.9 210 42.4
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 1.1e-39 169.1 233 38.6
ECA234G4111 Erigeron canadensis HOM05D007280 ORTHO05D009108 7.6e-38 162.9 136 61.0
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 6.9e-31 139.8 119 56.3
Atru.chr11.1056 Acer truncatum HOM05D007280 ORTHO05D009108 1.8e-18 98.6 76 59.2
Thhalv10027579m.g Eutrema salsugineum HOM05D000891 ORTHO05D000761 2.0e-14 85.1 282 23.0
Aa31LG6G13480 Aethionema arabicum HOM05D000891 ORTHO05D000761 4.5e-14 84.0 283 21.6
AL7G14330 Arabidopsis lyrata HOM05D000891 ORTHO05D000761 7.6e-14 83.2 264 23.1
AT4G36680 Arabidopsis thaliana HOM05D000891 ORTHO05D000761 1.3e-13 82.4 264 22.0
CARHR245040 Cardamine hirsuta HOM05D000891 ORTHO05D000761 1.3e-13 82.4 278 20.5
Sp7g34340 Schrenkiella parvula HOM05D000891 ORTHO05D000761 5.5e-12 77.0 275 21.8
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 4.6e-11 73.9 274 23.0
Aa31LG8G15540 Aethionema arabicum HOM05D000891 ORTHO05D000761 7.9e-11 73.2 263 21.3
AT2G18520 Arabidopsis thaliana HOM05D000891 ORTHO05D000761 1.8e-10 72.0 290 21.4
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 5.1e-10 70.5 245 21.2
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 6.7e-10 70.1 274 21.5
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 6.7e-10 70.1 266 24.1
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 1.5e-09 68.9 200 22.0
AL3G51870 Arabidopsis lyrata HOM05D000891 ORTHO05D000761 5.7e-09 67.0 283 21.6
CARHR109130 Cardamine hirsuta HOM05D000891 ORTHO05D000761 7.4e-09 66.6 272 21.7
AagrBONN_evm.TU.Sc2ySwM_362.2108 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.7e-09 66.2 220 25.9
AagrBONN_evm.TU.Sc2ySwM_362.661 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.2e-08 65.1 203 26.1
AagrBONN_evm.TU.Sc2ySwM_117.3815__3816 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.8e-08 64.7 222 25.7
Sabra12G0102200 Salix brachista HOM05D000001 ORTHO05D000003 2.8e-08 64.7 189 24.3
AUR62035097 Chenopodium quinoa HOM05D000001 ORTHO05D009335 8.2e-08 63.2 367 21.3
Medtr7g082160 Medicago truncatula HOM05D008684 ORTHO05D010796 8.2e-08 63.2 291 23.0
Potri.012G135600 Populus trichocarpa HOM05D000001 ORTHO05D000003 8.2e-08 63.2 189 23.8
AagrBONN_evm.TU.Sc2ySwM_344.335__336 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.1e-07 62.8 262 21.8
Carub.0007s0364 Capsella rubella HOM05D000891 ORTHO05D000761 1.1e-07 62.8 264 20.1
Cpa.g.sc4.211 Carica papaya HOM05D000001 ORTHO05D000003 1.8e-07 62.0 208 23.1
ECA246G1888 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.8e-07 62.0 305 22.6
THA.LOC104799057 Tarenaya hassleriana HOM05D000001 ORTHO05D010435 1.8e-07 62.0 226 23.9
CiPaw.08G016700 Carya illinoinensis HOM05D000001 ORTHO05D000003 3.1e-07 61.2 234 21.4
Eucgr.C02463 Eucalyptus grandis HOM05D005973 ORTHO05D007285 3.1e-07 61.2 323 24.5
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 3.1e-07 61.2 237 18.1
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 3.1e-07 61.2 237 18.1
AagrBONN_evm.TU.Sc2ySwM_344.871 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.1e-07 60.8 186 26.3
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 4.1e-07 60.8 248 18.5
Gohir.A05G005950 Gossypium hirsutum HOM05D000001 ORTHO05D000003 4.1e-07 60.8 194 25.8
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 5.3e-07 60.5 219 23.3
CSS0037549 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 6.9e-07 60.1 290 20.3
Gorai.009G006800 Gossypium raimondii HOM05D000001 ORTHO05D000003 6.9e-07 60.1 194 25.3
VMungo0251G1883 Vigna mungo HOM05D000001 ORTHO05D009857 6.9e-07 60.1 335 20.6
Aa31LG5G15710 Aethionema arabicum HOM05D000001 ORTHO05D009582 9.1e-07 59.7 192 24.5
Carub.0007s0221 Capsella rubella HOM05D000001 ORTHO05D000003 9.1e-07 59.7 189 22.8
Actinidia16370 Actinidia chinensis HOM05D000001 ORTHO05D000003 1.2e-06 59.3 287 22.3
CSS0041845 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D011479 1.2e-06 59.3 301 20.9
Glyma.07G119200 Glycine max HOM05D000300 ORTHO05D000383 1.2e-06 59.3 249 21.7
Potri.015G036400 Populus trichocarpa HOM05D008483 ORTHO05D010726 1.2e-06 59.3 154 24.7
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 1.2e-06 59.3 144 25.0
RcHm_v2.0_Chr7g0233371 Rosa chinensis HOM05D000001 ORTHO05D010175 1.2e-06 59.3 198 25.8
Sp7g35650 Schrenkiella parvula HOM05D000001 ORTHO05D000003 1.2e-06 59.3 189 21.2
HanXRQChr12g0368281 Helianthus annuus HOM05D000001 ORTHO05D000003 1.5e-06 58.9 192 28.1
SMO196G0078 Selaginella moellendorffii HOM05D000300 ORTHO05D002838 1.5e-06 58.9 268 23.5
GSVIVG01010654001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.5e-06 58.9 298 24.2
Cpa.g.sc48.56 Carica papaya HOM05D000001 ORTHO05D009582 2.0e-06 58.5 192 24.5
CiPaw.15G075400 Carya illinoinensis HOM05D000001 ORTHO05D000003 2.0e-06 58.5 189 24.9
Thhalv10020234m.g Eutrema salsugineum HOM05D000001 ORTHO05D009582 2.0e-06 58.5 194 23.2
Lsat_1_v5_gn_8_24360 Lactuca sativa HOM05D000001 ORTHO05D000003 2.0e-06 58.5 221 25.8
Cfa008261 Carpinus fangiana HOM05D000001 ORTHO05D000003 2.6e-06 58.2 191 25.7
COL.COLO4_22110 Corchorus olitorius HOM05D000891 ORTHO05D000761 2.6e-06 58.2 149 24.2
Manes.14G156200 Manihot esculenta HOM05D000001 ORTHO05D010426 2.6e-06 58.2 190 26.3
CANSAT80G0227 Cannabis sativa HOM05D005622 ORTHO05D002854 3.4e-06 57.8 328 19.8
CARHR062160 Cardamine hirsuta HOM05D005706 ORTHO05D007474 3.4e-06 57.8 244 22.5
Thhalv10010119m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 3.4e-06 57.8 203 23.2
Aqoxy3G03346 Aquilegia oxysepala HOM05D000001 ORTHO05D010176 4.5e-06 57.4 246 20.7
EL10Ac3g05821 Beta vulgaris HOM05D000001 ORTHO05D009335 4.5e-06 57.4 337 20.5
Haze_13784 Corylus avellana HOM05D000001 ORTHO05D000003 4.5e-06 57.4 189 24.9
MELO3C035706.2 Cucumis melo HOM05D000001 ORTHO05D010525 4.5e-06 57.4 244 23.4
SHI24838 Sapria himalayana HOM05D000001 ORTHO05D000003 4.5e-06 57.4 352 17.9
Thecc.10G115300 Theobroma cacao HOM05D000001 ORTHO05D000003 4.5e-06 57.4 285 23.2
TPR.G29077 Trifolium pratense HOM05D008684 ORTHO05D010796 4.5e-06 57.4 281 22.1
GSVIVG01034655001 Vitis vinifera HOM05D000001 ORTHO05D000003 4.5e-06 57.4 194 27.3
CARHR200220 Cardamine hirsuta HOM05D000001 ORTHO05D000003 5.9e-06 57.0 287 20.2
FAN22G2182 Fragaria x ananassa HOM05D007280 ORTHO05D009108 5.9e-06 57.0 30 90.0
MBI11_g35036_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 5.9e-06 57.0 209 25.8
SalBow6G5959 Salvia bowleyana HOM05D000300 ORTHO05D008589 5.9e-06 57.0 236 24.2
Sc11g0008660 Simmondsia chinensis HOM05D002007 ORTHO05D000355 5.9e-06 57.0 221 24.4
AagrBONN_evm.TU.Sc2ySwM_344.1344 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.7e-06 56.6 231 20.8
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 7.7e-06 56.6 94 36.2
Ciclev10017659m.g Citrus clementina HOM05D000001 ORTHO05D000003 7.7e-06 56.6 302 19.5
MELO3C030264.2 Cucumis melo HOM05D000001 ORTHO05D000003 7.7e-06 56.6 194 23.7
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 7.7e-06 56.6 195 25.1
Rhsim03G0097100 Rhododendron simsii HOM05D000001 ORTHO05D000003 7.7e-06 56.6 200 26.5


User provided reference genes

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