Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 1.9e-39 165.2 74 100.0
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 3.0e-13 78.2 54 66.7
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 8.7e-13 76.6 81 50.6
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 1.1e-12 76.3 81 50.6
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 1.9e-12 75.5 81 50.6
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 4.3e-12 74.3 82 50.0
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 5.6e-12 73.9 81 46.9
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 5.6e-12 73.9 81 49.4
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 5.6e-12 73.9 81 49.4
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 7.4e-12 73.6 81 48.1
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 7.4e-12 73.6 81 48.1
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 7.4e-12 73.6 82 48.8
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 1.3e-11 72.8 81 50.6
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 1.3e-11 72.8 81 50.6
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 1.3e-11 72.8 81 49.4
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 2.1e-11 72.0 81 48.1
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 2.1e-11 72.0 81 48.1
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 2.1e-11 72.0 81 46.9
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 2.8e-11 71.6 82 48.8
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 3.7e-11 71.2 80 48.8
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 3.7e-11 71.2 77 51.9
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 3.7e-11 71.2 81 46.9
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 4.8e-11 70.9 82 48.8
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 4.8e-11 70.9 77 50.6
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 4.8e-11 70.9 80 51.2
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 6.2e-11 70.5 81 45.7
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 6.2e-11 70.5 82 48.8
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 6.2e-11 70.5 82 48.8
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 6.2e-11 70.5 82 48.8
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 6.2e-11 70.5 82 47.6
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 6.2e-11 70.5 82 47.6
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 6.2e-11 70.5 82 47.6
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 6.2e-11 70.5 82 48.8
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 6.2e-11 70.5 77 49.4
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 6.2e-11 70.5 82 48.8
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 8.1e-11 70.1 82 48.8
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 8.1e-11 70.1 82 47.6
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 8.1e-11 70.1 82 47.6
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 8.1e-11 70.1 81 46.9
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 8.1e-11 70.1 76 52.6
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 1.4e-10 69.3 82 47.6
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 1.4e-10 69.3 82 47.6
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 1.4e-10 69.3 82 47.6
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 1.4e-10 69.3 82 47.6
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 1.4e-10 69.3 82 47.6
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 1.4e-10 69.3 82 46.3
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 1.4e-10 69.3 81 46.9
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 1.4e-10 69.3 81 46.9
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 1.8e-10 68.9 82 46.3
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 1.8e-10 68.9 83 43.4
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 1.8e-10 68.9 81 46.9
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 1.8e-10 68.9 83 47.0
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 2.4e-10 68.6 81 49.4
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 2.4e-10 68.6 81 49.4
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 2.4e-10 68.6 81 49.4
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 2.4e-10 68.6 81 45.7
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 2.4e-10 68.6 81 49.4
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 3.1e-10 68.2 80 48.8
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 3.1e-10 68.2 81 46.9
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 4.0e-10 67.8 82 47.6
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 4.0e-10 67.8 81 45.7
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 4.0e-10 67.8 51 60.8
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 4.0e-10 67.8 80 47.5
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 4.0e-10 67.8 80 45.0
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 4.0e-10 67.8 76 51.3
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 4.0e-10 67.8 76 51.3
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 4.0e-10 67.8 77 48.1
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 4.0e-10 67.8 81 46.9
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 5.3e-10 67.4 80 46.2
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 5.3e-10 67.4 81 44.4
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 5.3e-10 67.4 81 49.4
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 6.9e-10 67.0 77 45.5
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 6.9e-10 67.0 77 45.5
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 6.9e-10 67.0 76 51.3
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 6.9e-10 67.0 76 51.3
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 6.9e-10 67.0 81 45.7
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 6.9e-10 67.0 81 46.9
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 6.9e-10 67.0 81 44.4
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 6.9e-10 67.0 81 46.9
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 6.9e-10 67.0 81 46.9
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 9.0e-10 66.6 81 45.7
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 1.2e-09 66.2 80 46.2
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 1.2e-09 66.2 81 45.7
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 1.5e-09 65.9 81 43.2
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 1.5e-09 65.9 80 47.5
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 1.5e-09 65.9 76 50.0
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 1.5e-09 65.9 81 44.4
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 2.0e-09 65.5 81 44.4
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 2.0e-09 65.5 81 44.4
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 2.0e-09 65.5 81 44.4
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 2.0e-09 65.5 81 45.7
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 2.6e-09 65.1 76 47.4
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 3.4e-09 64.7 81 44.4
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 3.4e-09 64.7 73 47.9
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 3.4e-09 64.7 81 45.7
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 3.4e-09 64.7 81 43.2
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 4.5e-09 64.3 81 44.4
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 4.5e-09 64.3 81 44.4
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 5.8e-09 63.9 77 45.5
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 5.8e-09 63.9 81 43.2
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 5.8e-09 63.9 81 45.7
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 5.8e-09 63.9 81 45.7
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 5.8e-09 63.9 77 45.5
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 5.8e-09 63.9 81 42.0
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 5.8e-09 63.9 81 42.0
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 5.8e-09 63.9 77 45.5
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 5.8e-09 63.9 77 45.5
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 5.8e-09 63.9 77 45.5
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 7.6e-09 63.5 81 40.7
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 7.6e-09 63.5 80 45.0
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 1.0e-08 63.2 81 43.2
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 1.0e-08 63.2 81 43.2
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 1.0e-08 63.2 77 45.5
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 1.3e-08 62.8 80 43.8
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 1.7e-08 62.4 77 42.9
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 1.7e-08 62.4 80 42.5
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 1.7e-08 62.4 80 42.5
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 2.2e-08 62.0 81 42.0
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 2.9e-08 61.6 81 44.4
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 3.8e-08 61.2 106 36.8
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 6.5e-08 60.5 76 42.1
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 6.5e-08 60.5 81 42.0
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 6.5e-08 60.5 77 44.2
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 6.5e-08 60.5 82 41.5
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 2.7e-06 55.1 81 42.0
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 2.7e-06 55.1 69 47.8


User provided reference genes

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