Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 8.2e-117 423.7 208 100.0
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 4.1e-92 341.7 213 81.7
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 1.7e-90 336.3 220 81.4
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 5.5e-81 304.7 209 76.1
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 1.2e-80 303.5 210 76.2
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.8e-79 299.7 209 75.1
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 9.7e-78 293.9 209 74.2
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 8.2e-77 290.8 209 73.2
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.7e-74 283.1 202 73.8
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 2.3e-71 272.7 212 69.8
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 4.4e-70 268.5 208 69.7
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 3.7e-69 265.4 212 67.9
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.1e-68 263.8 207 70.5
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 1.8e-68 263.1 215 67.0
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 4.1e-68 261.9 211 68.2
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 2.0e-67 259.6 210 68.1
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 2.3e-66 256.1 210 67.6
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 1.5e-65 253.4 208 66.3
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 1.9e-65 253.1 212 67.5
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 5.5e-65 251.5 205 65.4
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 9.5e-65 250.8 211 64.9
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 1.6e-64 250.0 208 64.9
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 2.1e-64 249.6 207 66.2
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 6.1e-64 248.1 204 65.7
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 2.3e-63 246.1 210 63.8
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 7.5e-62 241.1 207 65.7
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 3.7e-61 238.8 213 61.0
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 6.3e-61 238.0 209 61.7
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 8.3e-61 237.7 203 65.0
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 1.4e-60 236.9 202 63.9
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 1.4e-60 236.9 211 64.0
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 2.4e-60 236.1 210 64.3
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 4.1e-60 235.3 204 64.2
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 7.0e-60 234.6 207 62.8
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 9.2e-60 234.2 205 62.9
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 9.2e-60 234.2 210 61.9
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 1.6e-59 233.4 213 62.9
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 2.0e-59 233.0 202 63.4
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 2.0e-59 233.0 206 63.6
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 3.5e-59 232.3 204 62.3
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 4.5e-59 231.9 201 63.2
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 5.9e-59 231.5 218 59.6
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 7.8e-59 231.1 216 62.0
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 1.0e-58 230.7 211 62.1
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 1.3e-58 230.3 210 61.0
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.7e-58 229.9 151 76.2
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 1.7e-58 229.9 205 60.5
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 3.8e-58 228.8 209 60.8
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 6.6e-58 228.0 200 62.5
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 1.1e-57 227.3 209 62.2
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 1.5e-57 226.9 211 61.6
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 1.5e-57 226.9 210 61.4
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 1.5e-57 226.9 212 61.8
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 1.9e-57 226.5 216 60.6
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 2.5e-57 226.1 211 60.2
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 3.3e-57 225.7 212 62.7
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 5.6e-57 224.9 204 62.7
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 7.3e-57 224.6 193 63.7
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 2.1e-56 223.0 210 59.0
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 2.8e-56 222.6 203 61.6
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 2.8e-56 222.6 203 61.6
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 3.6e-56 222.2 211 58.8
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 4.7e-56 221.9 206 60.7
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 4.7e-56 221.9 210 61.0
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 6.1e-56 221.5 212 62.3
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 6.1e-56 221.5 209 60.3
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 8.0e-56 221.1 209 60.3
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 1.8e-55 219.9 204 59.3
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 3.1e-55 219.2 158 70.3
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 8.9e-55 217.6 210 60.0
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 1.5e-54 216.9 147 72.1
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 2.0e-54 216.5 202 58.4
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 9.8e-54 214.2 150 70.0
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 1.7e-53 213.4 212 59.9
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 1.7e-53 213.4 198 60.1
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 2.9e-53 212.6 120 83.3
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 6.4e-53 211.5 179 63.1
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 8.3e-53 211.1 202 57.9
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 1.9e-52 209.9 167 65.9
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 1.9e-52 209.9 201 60.7
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 3.2e-52 209.1 210 58.6
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 4.1e-52 208.8 147 70.1
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 5.4e-52 208.4 204 58.8
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.6e-51 206.8 205 56.6
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 2.7e-51 206.1 204 58.3
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 6.0e-51 204.9 203 55.7
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 2.3e-50 203.0 171 63.2
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 2.3e-50 203.0 160 65.6
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 3.0e-50 202.6 115 81.7
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 5.0e-50 201.8 139 71.9
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 5.0e-50 201.8 139 71.9
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 5.0e-50 201.8 139 71.9
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 1.1e-49 200.7 144 70.1
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 1.1e-49 200.7 144 70.1
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 1.5e-49 200.3 203 57.6
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 1.5e-49 200.3 170 64.7
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 2.5e-49 199.5 160 63.1
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 4.3e-49 198.7 187 58.3
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 6.2e-48 194.9 192 57.3
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 8.0e-48 194.5 187 56.7
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 1.1e-47 194.1 198 54.5
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 1.1e-47 194.1 162 61.7
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 2.3e-47 193.0 180 60.0
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 2.3e-47 193.0 113 77.9
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 8.9e-47 191.0 188 56.9
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 2.0e-46 189.9 113 77.0
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 4.4e-46 188.7 188 55.3
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 2.2e-45 186.4 207 52.7
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.9e-44 183.3 152 60.5
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 3.2e-44 182.6 153 59.5
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 1.2e-43 180.6 184 58.2
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 3.5e-43 179.1 156 59.6
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 1.1e-41 174.1 174 56.9
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.9e-41 173.3 129 65.1
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 4.3e-41 172.2 124 69.4
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 8.1e-40 167.9 128 64.8
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 1.1e-39 167.5 155 56.1
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 5.2e-39 165.2 154 53.9
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 5.2e-39 165.2 113 65.5
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 4.4e-38 162.2 108 67.6
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 7.1e-36 154.8 157 55.4
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 3.9e-34 149.1 158 53.8
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 1.9e-28 130.2 121 50.4
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 1.9e-28 130.2 109 55.0
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 5.6e-25 118.6 122 50.0
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 1.5e-22 110.5 108 50.0
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.6e-16 90.5 94 53.2
Actinidia36920 Actinidia chinensis HOM05D006377 ORTHO05D057244 1.6e-11 73.9 149 39.6


User provided reference genes

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