Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 2072.7 976 100.0
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1888.2 972 90.5
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1759.2 973 83.4
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1758.8 974 83.9
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1751.9 974 84.0
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1733.4 978 82.2
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1728.4 971 82.7
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1722.6 978 82.0
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1701.0 953 82.9
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1662.5 975 79.3
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1658.3 974 78.7
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1654.8 925 82.3
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1642.1 974 77.3
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1635.5 973 77.6
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1635.2 975 77.3
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1634.0 987 77.0
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1627.8 975 77.1
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1625.5 959 78.5
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1625.5 973 76.9
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1625.1 974 77.0
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1619.8 976 76.9
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1617.1 974 77.1
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1612.0 974 76.1
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1610.9 978 76.6
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1602.0 973 76.3
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1600.5 975 75.8
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1593.6 973 75.2
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1590.9 973 75.1
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1588.5 974 74.6
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1578.1 974 75.4
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1576.6 974 75.4
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1573.1 969 75.6
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1571.6 973 74.3
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1571.2 970 75.3
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1568.9 978 74.5
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1565.4 973 75.0
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1564.7 972 75.6
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1561.6 974 72.9
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1560.4 971 75.1
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1560.4 973 73.9
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1556.6 970 74.6
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1553.5 967 74.0
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1546.6 972 74.6
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1543.9 976 73.5
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1542.3 975 73.5
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1541.2 985 72.8
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1540.8 965 74.3
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1539.6 965 74.9
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1537.3 974 73.4
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1536.5 970 72.8
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1535.0 971 72.7
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1531.9 964 73.4
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1531.2 956 73.1
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1529.6 972 73.5
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1528.8 971 72.4
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1523.8 975 73.5
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1523.5 971 72.7
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1523.5 964 74.1
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1522.7 975 73.3
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1520.4 972 72.9
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1518.4 967 72.6
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1509.2 985 71.7
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1506.5 970 72.6
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1506.1 977 71.4
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1504.2 972 71.1
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1503.8 968 71.5
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1503.8 971 71.7
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1503.4 972 72.4
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1502.6 973 71.7
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1500.7 980 71.7
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1499.6 970 72.7
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1496.5 972 71.0
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1496.1 971 71.7
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1495.3 976 72.6
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1495.3 981 72.0
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1492.2 969 71.4
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1491.9 969 71.6
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1490.3 976 72.1
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1484.2 977 71.3
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1481.1 969 71.8
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1479.9 981 71.5
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1478.0 973 71.4
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1467.6 973 70.7
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1466.8 978 70.2
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1465.7 941 72.5
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1457.2 976 69.9
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1454.1 969 70.0
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1449.1 966 69.8
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1448.3 1001 68.8
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1445.3 849 78.3
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1443.3 872 74.9
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1441.4 975 69.3
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1438.7 960 70.4
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1436.4 878 75.1
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1429.8 979 69.3
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1427.9 976 68.9
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1418.3 973 67.6
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1416.0 978 68.9
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1411.7 852 75.2
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1410.2 982 66.5
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1407.5 979 66.3
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1405.6 980 68.2
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1404.8 973 68.1
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1401.7 976 67.9
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1397.5 965 67.9
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1395.9 976 67.9
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1394.0 979 67.8
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1391.7 973 67.8
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1389.0 980 67.6
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1389.0 980 67.6
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1385.5 980 68.0
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1380.9 980 67.7
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1372.8 977 67.5
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1372.1 977 67.3
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1367.4 977 67.2
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1355.5 979 66.8
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1338.6 1006 62.6
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1323.9 976 63.5
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1297.7 977 64.7
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1297.0 768 78.1
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1291.2 762 77.4
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1263.8 980 63.6
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1253.4 982 63.1
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1244.2 788 74.0
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1233.4 852 68.4
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1219.9 789 72.0
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1134.4 787 68.0
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 4.6e-303 1044.6 979 53.1
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 3.2e-296 1021.9 685 69.9
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 1.8e-291 1006.1 960 52.6
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 8.7e-278 960.7 704 65.8
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 6.7e-270 934.5 963 50.6
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 7.9e-263 911.0 960 48.4
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 2.3e-254 882.9 967 47.5
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.2e-249 866.3 564 71.5
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 1.3e-228 797.3 843 48.8
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.3e-193 680.2 402 75.9
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 5.1e-129 466.5 409 57.9
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 1.4e-126 458.4 288 74.0
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 2.2e-124 451.1 344 64.5
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 8.8e-113 412.5 370 57.0
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 2.5e-91 341.3 276 60.9
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 3.3e-91 340.9 215 73.5
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.0e-89 335.9 202 72.3
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 4.6e-77 293.9 192 70.8
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 4.3e-67 260.8 156 75.0
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 1.4e-62 245.7 214 54.2
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 4.2e-62 244.2 159 68.6
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 4.6e-61 240.7 641 30.6
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 4.0e-57 227.6 143 72.0
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 1.3e-52 212.6 147 66.0
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 5.3e-49 200.7 368 37.8
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.4e-46 192.6 158 56.3
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 3.7e-42 177.9 150 57.3
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 8.1e-42 176.8 783 24.4
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 3.9e-36 157.9 96 71.9
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 2.1e-34 152.1 149 53.7
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 2.8e-34 151.8 92 75.0
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 2.0e-32 145.6 118 55.9
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 2.5e-30 138.7 95 71.6
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 1.2e-29 136.3 118 55.1
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.6e-26 125.9 89 62.9
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 1.0e-23 116.7 183 36.6
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 3.3e-19 101.7 189 34.9
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 4.8e-18 97.8 101 49.5
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 1.4e-17 96.3 71 69.0
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 1.4e-14 86.3 121 40.5
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 6.7e-12 77.4 114 43.0
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 4.1e-09 68.2 47 70.2
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 4.1e-09 68.2 46 60.9
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.5e-06 59.7 44 65.9
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 2.5e-06 58.9 91 36.3
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 3.2e-06 58.5 76 43.4


User provided reference genes

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