Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1168900 Malus domestica HOM05D001598 ORTHO05D002757 6.7e-40 166.8 78 100.0
MD00G1080400 Malus domestica HOM05D001598 ORTHO05D002757 1.4e-16 89.4 41 97.6
MD05G1272100 Malus domestica HOM05D001598 ORTHO05D002757 2.0e-15 85.5 43 90.7
MD10G1276700 Malus domestica HOM05D001598 ORTHO05D002757 5.7e-15 84.0 41 92.7
MD03G1229800 Malus domestica HOM05D001598 ORTHO05D002757 5.4e-13 77.4 41 87.8
MD11G1250300 Malus domestica HOM05D001598 ORTHO05D002757 5.4e-13 77.4 41 87.8
RcHm_v2.0_Chr5g0048751 Rosa chinensis HOM05D001598 ORTHO05D002757 5.4e-13 77.4 41 87.8
FvH4_3g26250 Fragaria vesca HOM05D001598 ORTHO05D002757 1.2e-12 76.3 41 85.4
FAN11G0362 Fragaria x ananassa HOM05D001598 ORTHO05D002757 1.2e-12 76.3 41 85.4
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.2e-12 76.3 41 85.4
FAN25G3483 Fragaria x ananassa HOM05D001598 ORTHO05D002757 1.2e-12 76.3 41 85.4
Atru.chr11.1498 Acer truncatum HOM05D001598 ORTHO05D002757 2.7e-12 75.1 41 85.4
Ciclev10020578m.g Citrus clementina HOM05D001598 ORTHO05D002757 2.7e-12 75.1 41 85.4
Haze_02583 Corylus avellana HOM05D002054 ORTHO05D005362 2.7e-12 75.1 57 68.4
PGR142G2642 Punica granatum HOM05D001598 ORTHO05D002757 2.7e-12 75.1 53 73.6
Thecc.04G200200 Theobroma cacao HOM05D001598 ORTHO05D002757 2.7e-12 75.1 41 85.4
Duzib212G0742 Durio zibethinus HOM05D001598 ORTHO05D002757 4.6e-12 74.3 41 82.9
Atru.chr4.1342 Acer truncatum HOM05D001598 ORTHO05D002757 5.9e-12 73.9 41 82.9
Cfa015220 Carpinus fangiana HOM05D001598 ORTHO05D002757 7.8e-12 73.6 41 82.9
CiPaw.01G173400 Carya illinoinensis HOM05D001598 ORTHO05D002757 7.8e-12 73.6 41 82.9
COL.COLO4_20174 Corchorus olitorius HOM05D001598 ORTHO05D002757 1.0e-11 73.2 41 80.5
Eucgr.H00336 Eucalyptus grandis HOM05D001598 ORTHO05D002757 1.0e-11 73.2 41 80.5
Manes.11G105600 Manihot esculenta HOM05D001598 ORTHO05D002757 1.0e-11 73.2 53 71.7
Aqoxy7G03836 Aquilegia oxysepala HOM05D001598 ORTHO05D002757 1.3e-11 72.8 41 82.9
Cpa.g.sc48.118 Carica papaya HOM05D001598 ORTHO05D002757 1.3e-11 72.8 41 80.5
Prupe.4G179500 Prunus persica HOM05D001598 ORTHO05D002757 1.3e-11 72.8 41 82.9
CSS0008753 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D002757 1.7e-11 72.4 41 82.9
CAN.G1156.51 Capsicum annuum HOM05D001598 ORTHO05D002757 1.7e-11 72.4 41 82.9
DCAR_013251 Daucus carota HOM05D001598 ORTHO05D002757 1.7e-11 72.4 41 82.9
Dinv44166 Davidia involucrata HOM05D001598 ORTHO05D002757 1.7e-11 72.4 41 82.9
Migut.D00847 Erythranthe guttata HOM05D001598 ORTHO05D002757 1.7e-11 72.4 41 82.9
Nitab4.5_0000496g0060 Nicotiana tabacum HOM05D001598 ORTHO05D002757 1.7e-11 72.4 41 82.9
Peaxi162Scf00007g01329 Petunia axillaris HOM05D001598 ORTHO05D002757 1.7e-11 72.4 41 82.9
Potri.007G133900 Populus trichocarpa HOM05D001598 ORTHO05D002757 1.7e-11 72.4 53 71.7
QL03p060335 Quercus lobata HOM05D001598 ORTHO05D002757 1.7e-11 72.4 53 69.8
QL10p006125 Quercus lobata HOM05D001598 ORTHO05D002757 1.7e-11 72.4 53 69.8
Solyc05g056510.3 Solanum lycopersicum HOM05D001598 ORTHO05D002757 1.7e-11 72.4 41 82.9
Sopen05g034910 Solanum pennellii HOM05D001598 ORTHO05D002757 1.7e-11 72.4 41 82.9
SGA_v2.0_scaffold25G11133 Striga asiatica HOM05D001598 ORTHO05D002757 1.7e-11 72.4 41 82.9
MSTRG.21240 Avicennia marina HOM05D001598 ORTHO05D002757 2.3e-11 72.0 41 80.5
TWI36G1000 Tripterygium wilfordii HOM05D001598 ORTHO05D002757 2.9e-11 71.6 41 78.0
CANSAT80G0504 Cannabis sativa HOM05D001598 ORTHO05D002757 3.9e-11 71.2 41 78.0
Gohir.A02G020800 Gossypium hirsutum HOM05D001598 ORTHO05D002757 3.9e-11 71.2 41 78.0
Gorai.005G030700 Gossypium raimondii HOM05D001598 ORTHO05D002757 3.9e-11 71.2 41 78.0
Lj5A679G28 Lonicera japonica HOM05D001598 ORTHO05D002757 3.9e-11 71.2 41 80.5
Nitab4.5_0002704g0060 Nicotiana tabacum HOM05D001598 ORTHO05D002757 3.9e-11 71.2 41 80.5
Rhsim12G0173100 Rhododendron simsii HOM05D001598 ORTHO05D002757 3.9e-11 71.2 41 80.5
CiPaw.02G103200 Carya illinoinensis HOM05D001598 ORTHO05D002757 5.0e-11 70.9 41 80.5
Oeu027580.1 Olea europaea HOM05D001598 ORTHO05D002757 5.0e-11 70.9 41 80.5
Gohir.D02G024800 Gossypium hirsutum HOM05D001598 ORTHO05D002757 6.6e-11 70.5 41 78.0
Oeu050015.1 Olea europaea HOM05D001598 ORTHO05D002757 6.6e-11 70.5 41 80.5
Hund14885 Selenicereus undatus HOM05D001598 ORTHO05D002757 6.6e-11 70.5 41 78.0
Haze_01397 Corylus avellana HOM05D001598 ORTHO05D002757 8.6e-11 70.1 41 78.0
CsaV3_3G002830 Cucumis sativus L. HOM05D001598 ORTHO05D002757 8.6e-11 70.1 41 75.6
Lj6g0023615 Lotus japonicus HOM05D001598 ORTHO05D002757 8.6e-11 70.1 41 75.6
MBI07_g03083_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D002757 8.6e-11 70.1 41 80.5
MELO3C013949.2 Cucumis melo HOM05D001598 ORTHO05D002757 1.1e-10 69.7 41 75.6
Actinidia36797 Actinidia chinensis HOM05D001598 ORTHO05D002757 1.5e-10 69.3 41 78.0
EL10Ac3g07464 Beta vulgaris HOM05D001598 ORTHO05D002757 1.5e-10 69.3 41 75.6
Sc25g0002290 Simmondsia chinensis HOM05D001598 ORTHO05D002757 1.5e-10 69.3 41 75.6
GSVIVG01038094001 Vitis vinifera HOM05D001598 ORTHO05D002757 1.5e-10 69.3 41 78.0
arahy.Tifrunner.gnm1.ann1.9TX8HM Arachis hypogaea HOM05D001598 ORTHO05D002757 1.9e-10 68.9 41 75.6
arahy.Tifrunner.gnm1.ann1.F1G1DC Arachis hypogaea HOM05D001598 ORTHO05D002757 1.9e-10 68.9 41 75.6
Nn7g37454 Nelumbo nucifera HOM05D001598 ORTHO05D002757 1.9e-10 68.9 41 78.0
ClCG10G002790 Citrullus lanatus HOM05D001598 ORTHO05D002757 2.5e-10 68.6 41 73.2
Cc01_g06370 Coffea canephora HOM05D001598 ORTHO05D002757 3.3e-10 68.2 41 75.6
Nn1g09429 Nelumbo nucifera HOM05D001598 ORTHO05D002757 3.3e-10 68.2 41 78.0
unitig_699.g19728 Utricularia gibba HOM05D001598 ORTHO05D002757 3.3e-10 68.2 40 77.5
Glyma.09G051800 Glycine max HOM05D001598 ORTHO05D002757 4.3e-10 67.8 41 73.2
Sabra07G0108700 Salix brachista HOM05D001598 ORTHO05D002757 4.3e-10 67.8 41 75.6
Sabra07G0121000 Salix brachista HOM05D001598 ORTHO05D002757 4.3e-10 67.8 41 75.6
THA.LOC104820518 Tarenaya hassleriana HOM05D001598 ORTHO05D002757 4.3e-10 67.8 41 73.2
TAR627G0849 Trochodendron aralioides HOM05D001598 ORTHO05D002757 4.3e-10 67.8 41 78.0
VMungo1309G2065 Vigna mungo HOM05D001598 ORTHO05D002757 4.3e-10 67.8 41 73.2
Sed0000960 Sechium edule HOM05D001598 ORTHO05D002757 5.6e-10 67.4 41 70.7
SHI53821 Sapria himalayana HOM05D001598 ORTHO05D002757 7.3e-10 67.0 41 70.7
AUR62018568 Chenopodium quinoa HOM05D001598 ORTHO05D002757 9.5e-10 66.6 41 70.7
AUR62020850 Chenopodium quinoa HOM05D001598 ORTHO05D002757 9.5e-10 66.6 41 70.7
Ca_01999_v3 Cicer arietinum L. HOM05D001598 ORTHO05D002757 9.5e-10 66.6 41 70.7
Thhalv10000666m.g Eutrema salsugineum HOM05D001598 ORTHO05D002757 9.5e-10 66.6 66 50.0
Psat5g075120 Pisum sativum HOM05D001598 ORTHO05D002757 9.5e-10 66.6 41 70.7
TPR.G31851 Trifolium pratense HOM05D001598 ORTHO05D002757 9.5e-10 66.6 41 70.7
AT5G62270 Arabidopsis thaliana HOM05D001598 ORTHO05D002757 1.2e-09 66.2 41 70.7
BcaB07g29787 Brassica carinata HOM05D001598 ORTHO05D002757 1.2e-09 66.2 41 70.7
BcaC03g18140 Brassica carinata HOM05D001598 ORTHO05D002757 1.2e-09 66.2 41 70.7
A02p42210 Brassica napus HOM05D001598 ORTHO05D002757 1.2e-09 66.2 41 70.7
C02p62070 Brassica napus HOM05D001598 ORTHO05D002757 1.2e-09 66.2 41 70.7
BolC2t12266H Brassica oleracea HOM05D001598 ORTHO05D002757 1.2e-09 66.2 41 70.7
BraA02t09150Z Brassica rapa HOM05D001598 ORTHO05D002757 1.2e-09 66.2 41 70.7
Carub.0008s2296 Capsella rubella HOM05D001598 ORTHO05D002757 1.2e-09 66.2 41 70.7
CARHR276050 Cardamine hirsuta HOM05D001598 ORTHO05D002757 1.2e-09 66.2 41 70.7
CDE03G0379 Ceratophyllum demersum HOM05D001598 ORTHO05D002757 1.2e-09 66.2 41 73.2
CDE06G0993 Ceratophyllum demersum HOM05D001598 ORTHO05D002757 1.2e-09 66.2 41 73.2
THA.LOC104821398 Tarenaya hassleriana HOM05D001598 ORTHO05D002757 1.2e-09 66.2 41 70.7
Hund10980 Selenicereus undatus HOM05D001598 ORTHO05D002757 1.6e-09 65.9 41 73.2
Glyma.15G158100 Glycine max HOM05D001598 ORTHO05D002757 2.1e-09 65.5 41 70.7
PSO063G3912 Papaver somniferum HOM05D001598 ORTHO05D002757 2.1e-09 65.5 41 73.2
Phvul.009G242000 Phaseolus vulgaris HOM05D001598 ORTHO05D002757 2.1e-09 65.5 41 68.3
Aa31LG11G1330 Aethionema arabicum HOM05D001598 ORTHO05D002757 2.8e-09 65.1 41 68.3
AL8G39090 Arabidopsis lyrata HOM05D001598 ORTHO05D002757 2.8e-09 65.1 41 68.3
Ah.13g078030 Amaranthus hybridus HOM05D001598 ORTHO05D002757 3.6e-09 64.7 41 70.7
Sp2g25470 Schrenkiella parvula HOM05D001598 ORTHO05D002757 3.6e-09 64.7 41 68.3
Thhalv10004417m.g Eutrema salsugineum HOM05D001598 ORTHO05D002757 4.7e-09 64.3 41 68.3
Lalb_Chr18g0052141 Lupinus albus HOM05D001598 ORTHO05D002757 4.7e-09 64.3 41 68.3
PSO782G1531 Papaver somniferum HOM05D001598 ORTHO05D002757 6.2e-09 63.9 41 70.7
BcaC01g06921 Brassica carinata HOM05D001598 ORTHO05D002757 1.8e-08 62.4 41 63.4
A06p28990 Brassica napus HOM05D001598 ORTHO05D002757 1.8e-08 62.4 41 63.4
C03p64600 Brassica napus HOM05D001598 ORTHO05D002757 1.8e-08 62.4 41 63.4
BolC3t18718H Brassica oleracea HOM05D001598 ORTHO05D002757 1.8e-08 62.4 41 63.4
BraA06t25844Z Brassica rapa HOM05D001598 ORTHO05D002757 1.8e-08 62.4 41 63.4
ATR0757G133 Amborella trichopoda HOM05D001598 ORTHO05D002757 3.1e-08 61.6 41 70.7
CSS0038856 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D002757 3.1e-08 61.6 38 73.7
Os01g0801700 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D002757 8.9e-08 60.1 41 68.3
HPP92_015460 Vanilla planifolia HOM05D001598 ORTHO05D002757 1.2e-07 59.7 41 68.3
ECA236G0081 Erigeron canadensis HOM05D001598 ORTHO05D002757 2.0e-07 58.9 41 65.9
SEGI_28205 Sequoiadendron giganteum HOM05D001598 ORTHO05D002757 3.4e-07 58.2 41 65.9
Lsat_1_v5_gn_8_112440 Lactuca sativa HOM05D001598 ORTHO05D002757 5.8e-07 57.4 41 63.4
Lsat_1_v5_gn_8_69520 Lactuca sativa HOM05D001598 ORTHO05D002757 5.8e-07 57.4 41 63.4
Zm00001eb150640 Zea mays HOM05D001598 ORTHO05D002757 7.5e-07 57.0 41 65.9
Zm00001eb369380 Zea mays HOM05D001598 ORTHO05D002757 2.2e-06 55.5 41 63.4


User provided reference genes

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