Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 6.2e-155 551.2 290 100.0
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 4.8e-139 498.4 268 92.5
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 3.2e-135 485.7 255 94.1
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 3.9e-125 452.2 269 85.1
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 6.7e-125 451.4 277 84.5
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 6.7e-125 451.4 277 84.5
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.5e-124 449.5 278 83.8
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 3.3e-124 449.1 277 84.1
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 3.3e-124 449.1 277 84.1
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 1.3e-120 437.2 266 82.0
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 5.0e-120 435.3 268 82.5
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 1.4e-119 433.7 266 81.6
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 3.6e-118 429.1 256 84.0
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 1.0e-117 427.6 267 80.9
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 1.8e-117 426.8 269 80.7
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 3.9e-117 425.6 262 81.7
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 5.1e-117 425.2 269 81.4
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 3.3e-116 422.5 265 80.8
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 4.3e-116 422.2 265 80.8
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 4.3e-116 422.2 269 79.6
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 4.3e-116 422.2 269 79.6
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 9.7e-116 421.0 266 81.2
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 9.7e-116 421.0 265 81.1
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 9.7e-116 421.0 266 80.8
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 1.3e-115 420.6 271 80.4
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 1.3e-115 420.6 267 79.8
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 1.7e-115 420.2 267 80.1
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 1.7e-115 420.2 265 80.8
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 2.2e-115 419.9 269 79.2
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 2.8e-115 419.5 270 81.1
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 3.7e-115 419.1 261 81.6
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 6.3e-115 418.3 268 80.2
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 5.3e-114 415.2 279 77.1
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 9.1e-114 414.5 261 81.6
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 1.2e-113 414.1 265 80.4
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 1.2e-113 414.1 276 76.8
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 2.0e-113 413.3 253 83.4
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 4.5e-113 412.1 259 83.0
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 4.5e-113 412.1 267 79.0
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 2.9e-112 409.5 296 73.0
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 1.1e-111 407.5 267 79.0
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 2.5e-111 406.4 267 78.7
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 9.4e-111 404.4 269 78.8
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 2.1e-110 403.3 258 79.5
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 2.1e-110 403.3 252 81.7
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 3.6e-110 402.5 254 80.3
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 3.6e-110 402.5 257 79.0
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 7.9e-110 401.4 266 76.7
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 7.9e-110 401.4 268 76.9
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 1.0e-109 401.0 271 77.1
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 1.0e-109 401.0 261 78.9
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 1.8e-109 400.2 265 77.4
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 3.0e-109 399.4 256 79.3
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 5.1e-109 398.7 257 79.0
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 6.7e-109 398.3 264 77.3
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 1.1e-108 397.5 265 76.2
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 2.6e-108 396.4 265 75.5
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 3.3e-108 396.0 270 76.3
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 3.3e-108 396.0 267 76.0
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 4.4e-108 395.6 261 78.2
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 9.7e-108 394.4 268 74.3
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 1.3e-107 394.0 265 77.7
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 1.3e-107 394.0 260 76.2
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 1.7e-107 393.7 267 74.2
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 3.7e-107 392.5 258 76.7
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 8.2e-107 391.3 254 77.6
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 4.1e-106 389.0 257 76.3
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 7.0e-106 388.3 258 76.4
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 3.5e-105 386.0 271 74.5
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 7.7e-105 384.8 268 73.9
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 1.0e-104 384.4 271 73.4
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 1.0e-104 384.4 213 87.8
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 1.7e-104 383.6 263 75.7
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 2.9e-104 382.9 268 73.9
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 5.0e-104 382.1 271 73.1
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 8.5e-104 381.3 271 72.7
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 2.5e-103 379.8 271 72.7
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 3.2e-103 379.4 262 74.8
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 5.5e-103 378.6 270 73.7
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 5.5e-103 378.6 243 78.6
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 5.5e-103 378.6 283 71.7
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 9.4e-103 377.9 263 73.0
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 9.4e-103 377.9 263 73.0
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 1.6e-102 377.1 265 74.0
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 1.6e-102 377.1 263 74.5
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 8.0e-102 374.8 263 73.0
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 8.0e-102 374.8 263 73.0
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 8.0e-102 374.8 270 73.0
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 1.0e-101 374.4 255 76.1
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 1.8e-101 373.6 255 74.5
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 2.3e-101 373.2 289 67.8
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 2.3e-101 373.2 264 74.2
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 3.9e-101 372.5 207 86.5
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 5.2e-101 372.1 259 73.4
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 2.0e-100 370.2 309 64.7
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 5.7e-100 368.6 258 73.6
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 1.3e-99 367.5 270 70.0
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 5.3e-98 362.1 275 70.2
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 7.7e-97 358.2 228 79.4
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 2.1e-94 350.1 253 71.1
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 2.7e-94 349.7 206 81.1
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 1.7e-91 340.5 272 65.4
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 5.3e-90 335.5 256 67.6
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 2.0e-89 333.6 259 64.9
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 1.0e-88 331.3 261 66.7
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 4.0e-85 319.3 252 69.0
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 5.7e-84 315.5 215 77.7
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 6.3e-83 312.0 249 65.9
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 1.9e-79 300.4 249 64.3
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 7.2e-79 298.5 251 60.6
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 8.0e-78 295.0 185 79.5
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 4.1e-74 282.7 228 63.6
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 1.2e-73 281.2 196 71.4
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 2.7e-73 280.0 189 74.6
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 6.8e-69 265.4 174 77.0
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 3.4e-68 263.1 175 73.7
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 7.5e-68 261.9 183 74.3
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 6.0e-65 252.3 175 71.4
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 1.6e-62 244.2 209 59.3
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 3.6e-62 243.0 248 50.4
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 6.2e-62 242.3 273 48.7
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 8.9e-53 211.8 257 51.0
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 7.1e-50 202.2 170 59.4
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 1.3e-43 181.4 227 44.5
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.3e-43 181.4 203 52.7
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 9.9e-36 155.2 278 35.6
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 7.9e-33 145.6 85 88.2
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 2.8e-30 137.1 80 86.2
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 4.2e-26 123.2 170 39.4
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 9.3e-26 122.1 279 32.3
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 7.4e-23 112.5 54 98.1
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 1.1e-21 108.6 55 92.7
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 4.9e-19 99.8 52 88.5
FvH4_5g19731 Fragaria vesca HOM05D005750 ORTHO05D035649 3.0e-08 63.9 58 65.5
FvH4_2g13931 Fragaria vesca HOM05D051764 ORTHO05D035649 1.3e-06 58.5 51 66.7


User provided reference genes

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