Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1098800 Malus domestica HOM05D002762 ORTHO05D008831 2.8e-88 328.6 161 100.0
MD16G1180200 Malus domestica HOM05D002762 ORTHO05D008831 9.0e-55 217.2 214 57.5
FAN12G0174 Fragaria x ananassa HOM05D002762 ORTHO05D008831 7.1e-52 207.6 214 52.8
FvH4_4g14000 Fragaria vesca HOM05D002762 ORTHO05D008831 1.2e-51 206.8 214 52.8
FAN22G0551 Fragaria x ananassa HOM05D002762 ORTHO05D008831 1.0e-50 203.8 214 52.3
FAN07G1246 Fragaria x ananassa HOM05D002762 ORTHO05D008831 1.3e-50 203.4 214 52.3
RcHm_v2.0_Chr4g0419641 Rosa chinensis HOM05D002762 ORTHO05D008831 1.3e-50 203.4 214 53.3
Ciclev10004552m.g Citrus clementina HOM05D002762 ORTHO05D008831 4.3e-49 198.4 213 50.2
QL06p006121 Quercus lobata HOM05D002762 ORTHO05D008831 3.7e-48 195.3 214 48.1
Actinidia40215 Actinidia chinensis HOM05D002762 ORTHO05D008831 4.0e-47 191.8 211 47.9
Gohir.A09G231700 Gossypium hirsutum HOM05D002762 ORTHO05D008831 1.5e-46 189.9 214 46.7
Gohir.D09G232800 Gossypium hirsutum HOM05D002762 ORTHO05D008831 1.5e-46 189.9 214 46.7
Gorai.006G255700 Gossypium raimondii HOM05D002762 ORTHO05D008831 1.5e-46 189.9 214 46.7
Thecc.04G271400 Theobroma cacao HOM05D002762 ORTHO05D008831 2.6e-46 189.1 214 47.2
CiPaw.01G157200 Carya illinoinensis HOM05D002762 ORTHO05D008831 3.4e-46 188.7 214 47.7
CANSAT78G1603 Cannabis sativa HOM05D002762 ORTHO05D008831 7.6e-46 187.6 214 49.1
Prupe.1G147800 Prunus persica HOM05D002762 ORTHO05D008831 7.6e-46 187.6 149 63.1
VMungo1215G1507 Vigna mungo HOM05D002762 ORTHO05D008831 9.9e-46 187.2 211 46.4
Phvul.003G097700 Phaseolus vulgaris HOM05D002762 ORTHO05D008831 2.2e-45 186.0 211 46.0
Duzib212G0752 Durio zibethinus HOM05D002762 ORTHO05D008831 3.8e-45 185.3 214 46.7
Lj4g0021299 Lotus japonicus HOM05D002762 ORTHO05D008831 3.8e-45 185.3 210 45.7
Potri.010G028600 Populus trichocarpa HOM05D002762 ORTHO05D008831 3.8e-45 185.3 214 47.7
Peaxi162Scf00095g00610 Petunia axillaris HOM05D002762 ORTHO05D008831 4.9e-45 184.9 211 46.9
GSVIVG01017858001 Vitis vinifera HOM05D002762 ORTHO05D008831 4.9e-45 184.9 214 47.2
Haze_01004 Corylus avellana HOM05D002762 ORTHO05D008831 6.4e-45 184.5 214 47.7
arahy.Tifrunner.gnm1.ann1.08LYWQ Arachis hypogaea HOM05D002762 ORTHO05D008831 1.9e-44 183.0 210 45.7
Ca_21567_v3 Cicer arietinum L. HOM05D002762 ORTHO05D008831 1.9e-44 183.0 211 45.0
Duzib052G0147 Durio zibethinus HOM05D002762 ORTHO05D008831 2.4e-44 182.6 214 45.3
Cfa015544 Carpinus fangiana HOM05D002762 ORTHO05D008831 3.2e-44 182.2 214 47.2
Lalb_Chr07g0177471 Lupinus albus HOM05D002762 ORTHO05D008831 3.2e-44 182.2 211 45.0
arahy.Tifrunner.gnm1.ann1.ZAIR7G Arachis hypogaea HOM05D002762 ORTHO05D008831 4.2e-44 181.8 210 45.2
Manes.03G187600 Manihot esculenta HOM05D002762 ORTHO05D008831 4.2e-44 181.8 214 45.3
CSS0041967 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D008831 5.5e-44 181.4 214 45.3
TAR365G0003 Trochodendron aralioides HOM05D002762 ORTHO05D008831 5.5e-44 181.4 214 46.7
DCAR_030580 Daucus carota HOM05D002762 ORTHO05D008831 7.1e-44 181.0 211 45.5
Glyma.17G019900 Glycine max HOM05D002762 ORTHO05D008831 7.1e-44 181.0 211 44.5
CSS0031724 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D008831 9.3e-44 180.6 214 45.3
Aqoxy5G00558 Aquilegia oxysepala HOM05D002762 ORTHO05D008831 1.2e-43 180.3 214 43.9
Lj6A665G69 Lonicera japonica HOM05D002762 ORTHO05D008831 1.2e-43 180.3 244 41.8
Nitab4.5_0000059g0110 Nicotiana tabacum HOM05D002762 ORTHO05D008831 1.6e-43 179.9 211 43.6
Sc19g0004720 Simmondsia chinensis HOM05D002762 ORTHO05D008831 1.6e-43 179.9 214 45.3
Nn4g26133 Nelumbo nucifera HOM05D002762 ORTHO05D008831 2.7e-43 179.1 214 44.4
Rhsim04G0212200 Rhododendron simsii HOM05D002762 ORTHO05D008831 2.7e-43 179.1 209 44.5
Sabra10G0012300 Salix brachista HOM05D002762 ORTHO05D008831 3.5e-43 178.7 214 46.7
Sopen01g032170 Solanum pennellii HOM05D002762 ORTHO05D008831 3.5e-43 178.7 211 46.0
Dinv38356 Davidia involucrata HOM05D002762 ORTHO05D008831 4.6e-43 178.3 214 45.8
TPR.G28123 Trifolium pratense HOM05D002762 ORTHO05D008831 4.6e-43 178.3 211 44.1
Solyc01g080360.3 Solanum lycopersicum HOM05D002762 ORTHO05D008831 6.0e-43 177.9 211 46.0
TWI53G0007 Tripterygium wilfordii HOM05D002762 ORTHO05D008831 6.0e-43 177.9 214 45.8
ClCG06G005650 Citrullus lanatus HOM05D002762 ORTHO05D008831 1.3e-42 176.8 210 44.8
PSO210G2175 Papaver somniferum HOM05D002762 ORTHO05D008831 1.3e-42 176.8 213 41.8
Cc03_g02810 Coffea canephora HOM05D002762 ORTHO05D008831 2.3e-42 176.0 211 42.2
Nitab4.5_0000894g0020 Nicotiana tabacum HOM05D002762 ORTHO05D008831 3.0e-42 175.6 211 42.7
Oeu035631.1 Olea europaea HOM05D002762 ORTHO05D008831 3.0e-42 175.6 214 43.9
CsaV3_6G005500 Cucumis sativus L. HOM05D002762 ORTHO05D008831 6.7e-42 174.5 210 44.3
Sed0011257 Sechium edule HOM05D002762 ORTHO05D008831 8.7e-42 174.1 208 45.2
CDE11G0719 Ceratophyllum demersum HOM05D002762 ORTHO05D008831 1.1e-41 173.7 210 41.9
Medtr4g118010 Medicago truncatula HOM05D002762 ORTHO05D008831 1.5e-41 173.3 211 42.2
PSO832G0886 Papaver somniferum HOM05D002762 ORTHO05D008831 7.4e-41 171.0 213 40.8
Psat4g031200 Pisum sativum HOM05D002762 ORTHO05D008831 9.6e-41 170.6 211 41.2
MSTRG.3975 Avicennia marina HOM05D002762 ORTHO05D008831 2.1e-40 169.5 214 41.1
Eucgr.F00974 Eucalyptus grandis HOM05D002762 ORTHO05D008831 2.1e-40 169.5 211 45.5
EL10Ac8g18297 Beta vulgaris HOM05D002762 ORTHO05D008831 2.8e-40 169.1 214 42.1
THA.LOC104802606 Tarenaya hassleriana HOM05D002762 ORTHO05D008831 3.7e-40 168.7 211 43.6
Migut.G00243 Erythranthe guttata HOM05D002762 ORTHO05D008831 4.8e-40 168.3 214 41.6
Migut.G00245 Erythranthe guttata HOM05D002762 ORTHO05D008831 4.8e-40 168.3 214 41.6
Hund09035 Selenicereus undatus HOM05D002762 ORTHO05D008831 8.2e-40 167.5 213 43.7
vmacro08246 Vaccinium macrocarpon HOM05D002762 ORTHO05D008831 8.2e-40 167.5 233 41.2
Aa31LG8G17700 Aethionema arabicum HOM05D002762 ORTHO05D008831 1.1e-39 167.2 211 42.7
MBI19_g15847_MAGBIO Magnolia biondii HOM05D002762 ORTHO05D008831 1.4e-39 166.8 216 44.0
AUR62021313 Chenopodium quinoa HOM05D002762 ORTHO05D008831 1.8e-39 166.4 214 41.1
CAN.G889.17 Capsicum annuum HOM05D002762 ORTHO05D008831 3.1e-39 165.6 211 41.7
COL.COLO4_13977 Corchorus olitorius HOM05D002762 ORTHO05D008831 5.3e-39 164.9 204 44.6
Thhalv10003762m.g Eutrema salsugineum HOM05D002762 ORTHO05D008831 6.9e-39 164.5 209 43.5
Sp6g27240 Schrenkiella parvula HOM05D002762 ORTHO05D008831 9.0e-39 164.1 210 42.9
AUR62033230 Chenopodium quinoa HOM05D002762 ORTHO05D008831 1.2e-38 163.7 214 40.7
AT2G20790 Arabidopsis thaliana HOM05D002762 ORTHO05D008831 2.6e-38 162.5 211 42.2
HanXRQChr07g0192681 Helianthus annuus HOM05D002762 ORTHO05D008831 3.4e-38 162.2 211 43.1
Carub.0003s3536 Capsella rubella HOM05D002762 ORTHO05D008831 1.0e-37 160.6 211 42.2
AL3G53900 Arabidopsis lyrata HOM05D002762 ORTHO05D008831 1.3e-37 160.2 211 40.8
SGA_v2.0_scaffold237G43848 Striga asiatica HOM05D002762 ORTHO05D008831 1.3e-37 160.2 214 40.2
Lsat_1_v5_gn_6_14820 Lactuca sativa HOM05D002762 ORTHO05D008831 2.2e-37 159.5 211 42.7
CARHR111460 Cardamine hirsuta HOM05D002762 ORTHO05D008831 3.8e-37 158.7 211 42.2
BolC3t13425H Brassica oleracea HOM05D002762 ORTHO05D008831 1.1e-36 157.1 209 41.6
A03p08030 Brassica napus HOM05D002762 ORTHO05D008831 1.9e-36 156.4 211 41.2
C03p09290 Brassica napus HOM05D002762 ORTHO05D008831 1.9e-36 156.4 209 41.6
BraA03t10129Z Brassica rapa HOM05D002762 ORTHO05D008831 1.9e-36 156.4 211 41.2
ATR0626G043 Amborella trichopoda HOM05D002762 ORTHO05D008831 2.1e-35 152.9 219 39.7
Sed0022901 Sechium edule HOM05D002762 ORTHO05D008831 2.1e-35 152.9 186 45.7
HPP92_018399 Vanilla planifolia HOM05D002762 ORTHO05D008831 3.9e-34 148.7 212 40.6
SEGI_30175 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 4.3e-33 145.2 222 37.4
unitig_899.g14405 Utricularia gibba HOM05D002762 ORTHO05D008831 1.3e-32 143.7 215 37.7
Zm00001eb410820 Zea mays HOM05D002762 ORTHO05D008831 5.9e-30 134.8 211 38.9
Nn1g08335 Nelumbo nucifera HOM05D002762 ORTHO05D008831 1.3e-26 123.6 75 73.3
AagrBONN_evm.TU.Sc2ySwM_368.1411 Anthoceros agrestis HOM05D002762 ORTHO05D008831 6.7e-26 121.3 219 32.9
Mapoly0055s0097 Marchantia polymorpha HOM05D002762 ORTHO05D008831 2.5e-25 119.4 229 33.2
SMO115G0172 Selaginella moellendorffii HOM05D002762 ORTHO05D008831 4.3e-25 118.6 220 32.7
ECA233G1162 Erigeron canadensis HOM05D002762 ORTHO05D008831 5.7e-25 118.2 211 35.1
MELO3C021387.2 Cucumis melo HOM05D002762 ORTHO05D008831 7.4e-25 117.9 169 40.2
Ah.09g229990 Amaranthus hybridus HOM05D002762 ORTHO05D008831 1.8e-23 113.2 170 38.2
SEGI_25743 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 2.0e-22 109.8 75 62.7
Pp3c2_12250 Physcomitrium patens HOM05D002762 ORTHO05D008831 4.5e-22 108.6 220 28.6
Actinidia23461 Actinidia chinensis HOM05D002762 ORTHO05D008831 9.4e-20 100.9 63 71.4
CBR_g19730 Chara braunii HOM05D002762 ORTHO05D008831 1.1e-12 77.4 76 43.4
VMungo1215G0498 Vigna mungo HOM05D002762 ORTHO05D008831 1.2e-11 73.9 48 66.7
Eucgr.B01191 Eucalyptus grandis HOM05D002762 ORTHO05D008831 1.1e-09 67.4 39 76.9
MD13G1179200 Malus domestica HOM05D002762 ORTHO05D008831 7.7e-06 54.7 40 65.0


User provided reference genes

Program Settings