Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 1.2e-152 543.1 266 100.0
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 7.5e-99 364.4 266 70.7
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 2.0e-88 329.7 266 64.3
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 3.1e-84 315.8 243 64.6
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.2e-83 313.9 243 63.8
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 3.9e-79 298.9 268 59.0
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 1.5e-78 297.0 228 63.6
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 4.3e-78 295.4 267 57.7
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 1.8e-76 290.0 268 59.3
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 1.8e-76 290.0 267 56.9
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 4.0e-76 288.9 268 57.8
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 8.9e-76 287.7 258 58.5
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.6e-75 286.2 220 63.6
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 8.4e-74 281.2 252 57.5
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 2.4e-73 279.6 247 61.1
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.2e-73 279.3 243 58.8
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 3.2e-73 279.3 267 54.7
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 4.1e-73 278.9 266 59.4
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 9.2e-73 277.7 243 58.4
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 9.2e-73 277.7 252 56.0
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.1e-72 276.6 247 60.7
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 3.5e-72 275.8 251 57.8
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 7.8e-72 274.6 244 55.7
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 1.3e-71 273.9 256 52.7
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 3.9e-71 272.3 253 56.1
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 5.1e-71 271.9 268 52.6
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 6.6e-71 271.6 245 55.9
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.1e-70 270.8 252 55.6
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 1.1e-70 270.8 247 55.5
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 2.5e-70 269.6 242 53.3
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 3.3e-70 269.2 267 51.7
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 4.3e-70 268.9 253 55.3
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 5.6e-70 268.5 252 52.8
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 1.4e-68 263.8 255 52.9
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 1.8e-68 263.5 243 51.9
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 2.4e-68 263.1 267 50.6
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 2.4e-68 263.1 256 51.2
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 3.1e-68 262.7 246 52.4
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 4.0e-68 262.3 271 51.3
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 1.5e-67 260.4 242 52.1
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 2.6e-67 259.6 250 53.6
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 3.4e-67 259.2 271 50.2
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 7.6e-67 258.1 245 52.2
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.3e-66 257.3 252 53.6
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 1.7e-66 256.9 213 61.0
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 3.8e-66 255.8 268 51.5
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.9e-65 253.4 252 53.2
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 1.9e-65 253.4 268 49.6
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 7.1e-65 251.5 227 55.9
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 2.1e-64 250.0 228 52.6
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 2.1e-64 250.0 251 53.4
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 1.3e-63 247.3 245 51.0
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 1.7e-63 246.9 234 55.6
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 2.3e-63 246.5 261 49.4
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 8.7e-63 244.6 234 55.1
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 1.5e-62 243.8 247 53.0
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 1.5e-62 243.8 244 51.2
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.3e-62 242.3 270 50.0
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 5.6e-62 241.9 246 48.8
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 5.6e-62 241.9 274 47.4
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 2.8e-61 239.6 211 56.4
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 3.6e-61 239.2 264 48.5
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 6.2e-61 238.4 269 48.3
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 1.8e-60 236.9 255 50.6
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.4e-60 236.5 255 51.4
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.1e-60 236.1 267 48.7
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 3.1e-60 236.1 255 50.2
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 4.0e-60 235.7 247 50.6
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 4.0e-60 235.7 239 49.8
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 5.3e-60 235.3 212 53.8
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 5.3e-60 235.3 252 50.0
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 5.3e-60 235.3 235 48.5
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 1.2e-59 234.2 229 50.2
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 1.5e-59 233.8 232 48.7
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 2.6e-59 233.0 227 52.4
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 3.4e-59 232.6 238 50.0
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 4.5e-59 232.3 268 47.0
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 4.5e-59 232.3 246 49.2
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.8e-58 229.2 256 50.4
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 6.4e-58 228.4 245 49.8
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 8.4e-58 228.0 247 48.6
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 1.1e-57 227.6 174 62.6
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.1e-57 227.6 244 47.1
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 1.9e-57 226.9 263 47.9
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 7.1e-57 224.9 201 55.2
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 2.7e-56 223.0 262 45.8
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 3.5e-56 222.6 222 51.8
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 3.5e-56 222.6 247 48.6
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 6.0e-56 221.9 252 45.6
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 3.9e-55 219.2 227 49.8
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 5.1e-55 218.8 258 45.7
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.3e-54 216.1 259 44.4
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 4.3e-54 215.7 246 46.3
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 5.6e-54 215.3 245 45.3
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 7.4e-54 214.9 238 50.0
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 9.6e-54 214.5 175 57.1
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 3.7e-53 212.6 246 48.8
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 4.8e-53 212.2 245 45.3
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 8.1e-53 211.5 246 45.1
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 1.8e-52 210.3 256 44.9
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 6.9e-52 208.4 262 43.5
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 9.0e-52 208.0 230 49.6
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 9.0e-52 208.0 221 47.1
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 2.6e-51 206.5 254 44.9
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 2.6e-51 206.5 261 43.3
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 4.5e-51 205.7 229 47.2
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 4.5e-51 205.7 250 47.6
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 5.8e-51 205.3 250 46.0
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 7.6e-51 204.9 263 41.4
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 9.9e-51 204.5 263 42.2
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 1.7e-50 203.8 243 45.3
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 1.7e-50 203.8 243 45.3
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 1.7e-50 203.8 243 45.3
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 2.2e-50 203.4 266 43.2
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 2.9e-50 203.0 227 45.8
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 8.4e-50 201.4 268 41.8
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 1.1e-49 201.1 259 42.9
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 1.4e-49 200.7 249 43.8
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 1.4e-49 200.7 249 43.8
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 3.2e-49 199.5 223 44.8
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 4.2e-49 199.1 203 49.8
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 5.5e-49 198.7 227 45.4
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 7.1e-49 198.4 261 42.1
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 3.5e-48 196.1 174 54.6
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 6.0e-48 195.3 245 42.9
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 6.0e-48 195.3 245 42.9
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 1.0e-47 194.5 223 48.0
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 3.9e-47 192.6 174 54.6
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 8.7e-47 191.4 241 47.3
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 8.7e-47 191.4 166 53.6
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 8.7e-47 191.4 244 45.5
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 1.1e-46 191.0 214 45.3
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.9e-46 190.3 221 43.9
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 2.5e-46 189.9 213 46.5
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 2.5e-46 189.9 252 45.2
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 2.5e-46 189.9 208 49.0
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 3.7e-45 186.0 291 38.1
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.4e-44 184.1 174 52.9
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.8e-44 183.7 251 40.2
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.4e-44 183.3 245 42.4
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 2.4e-44 183.3 174 53.4
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 2.0e-43 180.3 241 41.5
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 5.8e-43 178.7 226 44.2
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 1.3e-42 177.6 242 40.9
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 6.5e-42 175.3 270 39.3
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 6.7e-39 165.2 237 42.6
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 1.5e-38 164.1 178 49.4
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 2.2e-37 160.2 219 43.8
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 4.1e-36 156.0 266 38.0
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 3.4e-35 152.9 159 47.8
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 1.7e-34 150.6 244 37.3
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 5.0e-34 149.1 173 42.2
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 3.6e-32 142.9 222 35.6
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 4.6e-32 142.5 316 30.7
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 7.9e-32 141.7 235 36.2
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 1.8e-31 140.6 301 30.9
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 5.1e-31 139.0 136 58.1
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 6.7e-31 138.7 173 45.7
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.3e-29 134.4 143 52.4
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 2.4e-28 130.2 213 36.2
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 1.5e-27 127.5 198 39.9
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 1.0e-26 124.8 166 42.2
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.9e-26 123.2 81 67.9
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 9.4e-25 118.2 220 34.5
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.4e-23 114.4 146 45.9
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 3.0e-23 113.2 243 32.1
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 3.0e-23 113.2 128 49.2
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 8.8e-23 111.7 85 60.0
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.5e-22 110.9 197 38.1
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 3.3e-22 109.8 242 31.8
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 9.7e-22 108.2 251 31.5
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.0e-18 98.2 105 50.5
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 6.7e-15 85.5 102 41.2
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 2.6e-14 83.6 114 45.6
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 2.0e-11 73.9 102 40.2
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 1.3e-10 71.2 144 32.6
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 1.7e-10 70.9 73 49.3
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 2.9e-10 70.1 66 51.5
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 8.5e-10 68.6 46 65.2
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-09 66.6 155 30.3
GSVIVG01033244001 Vitis vinifera HOM05D003612 ORTHO05D004323 3.2e-09 66.6 61 55.7
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 3.6e-08 63.2 72 48.6
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 8.8e-07 58.5 70 44.3


User provided reference genes

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