Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 3.4e-192 674.9 351 100.0
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 2.7e-157 558.9 351 84.9
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 6.6e-119 431.4 345 69.9
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.2e-117 427.2 344 69.5
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 2.8e-117 426.0 345 69.6
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.8e-116 423.3 346 69.4
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 2.3e-116 422.9 250 88.4
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.0e-111 407.5 255 82.0
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.3e-111 407.1 255 81.6
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 2.6e-99 366.3 232 79.3
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 1.7e-98 363.6 234 78.2
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 8.4e-98 361.3 241 75.9
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 1.2e-96 357.5 328 60.7
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 4.6e-96 355.5 261 70.1
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 6.0e-96 355.1 260 70.4
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 3.0e-95 352.8 260 70.8
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 3.0e-95 352.8 233 75.5
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 3.9e-95 352.4 253 73.9
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 6.6e-95 351.7 261 70.5
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 6.6e-95 351.7 226 77.9
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 6.6e-95 351.7 226 77.9
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 6.6e-95 351.7 338 59.5
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 8.7e-95 351.3 235 75.7
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 8.7e-95 351.3 258 72.1
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.5e-94 350.5 296 64.2
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 1.9e-94 350.1 233 75.5
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 5.6e-94 348.6 265 69.1
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 9.6e-94 347.8 253 73.9
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 1.6e-93 347.1 314 63.1
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 2.1e-93 346.7 320 61.6
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 2.8e-93 346.3 296 64.2
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 4.8e-93 345.5 242 74.0
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 8.1e-93 344.7 323 59.8
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 4.0e-92 342.4 262 69.1
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 1.5e-91 340.5 274 66.1
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 1.5e-91 340.5 274 66.1
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 1.5e-91 340.5 219 79.0
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 2.0e-91 340.1 245 71.8
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 2.6e-91 339.7 319 60.2
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 3.4e-91 339.3 244 73.4
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 5.8e-91 338.6 255 71.0
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 7.6e-91 338.2 234 72.6
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 2.2e-90 336.7 339 56.9
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 8.4e-90 334.7 316 62.0
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 8.4e-90 334.7 264 67.0
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 1.1e-89 334.3 334 56.3
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 1.4e-89 334.0 241 71.4
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 4.2e-89 332.4 235 73.6
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 5.4e-89 332.0 250 69.2
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 2.7e-88 329.7 236 72.5
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 4.6e-88 328.9 235 71.5
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 4.6e-88 328.9 328 58.5
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 6.0e-88 328.6 223 74.0
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 7.9e-88 328.2 256 68.8
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 1.0e-87 327.8 311 61.4
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 1.3e-87 327.4 308 57.5
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 1.3e-87 327.4 299 60.2
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 1.8e-87 327.0 294 62.6
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 1.8e-87 327.0 221 77.8
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 2.3e-87 326.6 234 70.9
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 2.3e-87 326.6 225 75.6
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 3.0e-87 326.2 221 77.4
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 3.0e-87 326.2 297 59.9
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 5.1e-87 325.5 221 76.5
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 5.1e-87 325.5 234 70.9
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 6.7e-87 325.1 269 63.2
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 6.7e-87 325.1 221 77.4
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 8.7e-87 324.7 244 68.9
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 1.1e-86 324.3 221 76.0
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 1.1e-86 324.3 218 75.2
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 1.5e-86 323.9 221 76.9
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 1.9e-86 323.6 221 75.6
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 2.5e-86 323.2 221 76.0
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 2.5e-86 323.2 218 73.4
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 2.5e-86 323.2 244 68.4
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 4.3e-86 322.4 257 67.7
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 7.4e-86 321.6 220 73.2
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 9.6e-86 321.2 219 74.4
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 1.6e-85 320.5 221 76.0
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 1.6e-85 320.5 209 77.0
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 2.1e-85 320.1 221 75.6
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 2.1e-85 320.1 226 73.9
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 3.7e-85 319.3 220 73.6
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 4.8e-85 318.9 234 70.1
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 8.1e-85 318.2 232 71.6
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 8.1e-85 318.2 286 62.2
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 1.1e-84 317.8 204 79.9
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 1.1e-84 317.8 221 74.7
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 1.4e-84 317.4 219 76.3
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 1.4e-84 317.4 234 71.8
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 2.4e-84 316.6 235 68.1
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 3.1e-84 316.2 222 75.2
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 5.3e-84 315.5 204 79.4
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 9.0e-84 314.7 219 75.3
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 2.6e-83 313.2 310 55.5
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 3.4e-83 312.8 221 71.0
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 7.6e-83 311.6 218 71.6
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 2.2e-82 310.1 342 55.3
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 9.3e-81 304.7 222 73.4
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 1.6e-80 303.9 343 53.1
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 5.1e-79 298.9 203 76.8
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 5.1e-79 298.9 189 78.8
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 5.1e-79 298.9 216 70.4
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 1.0e-74 284.6 164 85.4
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 1.4e-68 264.2 209 66.0
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 1.2e-67 261.2 209 66.5
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 2.0e-67 260.4 209 66.0
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 2.2e-66 256.9 221 59.7
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 6.7e-63 245.4 197 60.9
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 8.8e-63 245.0 219 63.5
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 2.2e-58 230.3 142 78.9
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 3.8e-58 229.6 205 56.6
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 6.5e-50 202.2 159 62.3
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 8.5e-50 201.8 196 54.1
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 1.5e-49 201.1 184 54.3
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 3.0e-47 193.4 198 51.5
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 1.6e-43 181.0 174 50.6
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 3.8e-42 176.4 206 46.6
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 8.5e-42 175.3 142 67.6
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 5.5e-41 172.6 117 76.9
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 2.0e-35 154.1 157 58.0
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 1.9e-25 120.9 143 41.3
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 4.0e-23 113.2 65 87.7
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 3.7e-21 106.7 99 61.6
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 7.8e-19 99.0 78 65.4
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 4.7e-16 89.7 53 83.0
MD12G1014200 Malus domestica HOM05D002692 ORTHO05D002971 1.2e-11 75.1 104 51.0
Prupe.7G026500 Prunus persica HOM05D002692 ORTHO05D002971 3.5e-11 73.6 71 59.2
MD14G1011600 Malus domestica HOM05D002692 ORTHO05D002971 2.3e-10 70.9 90 53.3
Sed0008444 Sechium edule HOM05D002462 ORTHO05D002893 2.6e-06 57.4 161 25.5
CAN.G1337.27 Capsicum annuum HOM05D002462 ORTHO05D002893 5.8e-06 56.2 161 24.8
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 5.8e-06 56.2 135 25.9
Hma1.2p1_0367F.1_g136990 Hydrangea macrophylla HOM05D002462 ORTHO05D002893 7.5e-06 55.8 161 23.0
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 7.5e-06 55.8 135 25.2
Cc08_g13040 Coffea canephora HOM05D002462 ORTHO05D002893 9.8e-06 55.5 161 24.8
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 9.8e-06 55.5 135 24.4
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 9.8e-06 55.5 135 25.2


User provided reference genes

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