Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1002900 Malus domestica HOM05D003349 ORTHO05D003898 8.3e-82 307.0 155 100.0
MD14G1002300 Malus domestica HOM05D003349 ORTHO05D003898 1.6e-48 196.4 144 74.3
Prupe.7G003500 Prunus persica HOM05D003349 ORTHO05D003898 7.3e-46 187.6 144 70.8
FAN23G0882 Fragaria x ananassa HOM05D003349 ORTHO05D003898 4.8e-45 184.9 144 69.4
FvH4_1g28060 Fragaria vesca HOM05D003349 ORTHO05D003898 6.2e-45 184.5 144 68.8
FAN19G0867 Fragaria x ananassa HOM05D003349 ORTHO05D003898 6.2e-45 184.5 144 68.8
FvH4_5g28880 Fragaria vesca HOM05D003349 ORTHO05D003898 8.1e-45 184.1 144 68.1
FAN18G3983 Fragaria x ananassa HOM05D003349 ORTHO05D003898 8.1e-45 184.1 144 68.1
FAN26G3194 Fragaria x ananassa HOM05D003349 ORTHO05D003898 1.8e-44 183.0 144 68.1
RcHm_v2.0_Chr3g0497191 Rosa chinensis HOM05D003349 ORTHO05D003898 1.8e-44 183.0 140 69.3
COL.COLO4_13609 Corchorus olitorius HOM05D003349 ORTHO05D003898 4.0e-44 181.8 172 58.7
TWI34G0012 Tripterygium wilfordii HOM05D003349 ORTHO05D003898 5.3e-44 181.4 172 58.1
Ciclev10019371m.g Citrus clementina HOM05D003349 ORTHO05D003898 9.0e-44 180.6 172 58.1
Duzib128G1865 Durio zibethinus HOM05D003349 ORTHO05D003898 2.0e-43 179.5 172 58.1
Gohir.A11G259100 Gossypium hirsutum HOM05D003349 ORTHO05D003898 2.6e-43 179.1 172 58.1
Gohir.D11G269200 Gossypium hirsutum HOM05D003349 ORTHO05D003898 3.4e-43 178.7 172 58.1
Gorai.007G289100 Gossypium raimondii HOM05D003349 ORTHO05D003898 3.4e-43 178.7 172 58.1
TWI60G1263 Tripterygium wilfordii HOM05D003349 ORTHO05D003898 4.4e-43 178.3 172 58.7
Duzib177G0419 Durio zibethinus HOM05D003349 ORTHO05D003898 9.9e-43 177.2 172 57.6
QL07p020065 Quercus lobata HOM05D003349 ORTHO05D003898 1.7e-42 176.4 172 57.6
Sed0027207 Sechium edule HOM05D003349 ORTHO05D003898 1.7e-42 176.4 172 57.0
Cpa.g.sc51.107 Carica papaya HOM05D003349 ORTHO05D003898 3.8e-42 175.3 172 58.1
Thecc.05G293700 Theobroma cacao HOM05D003349 ORTHO05D003898 4.9e-42 174.9 172 57.0
MELO3C008798.2 Cucumis melo HOM05D003349 ORTHO05D003898 1.1e-41 173.7 172 56.4
ClCG04G005280 Citrullus lanatus HOM05D003349 ORTHO05D003898 1.4e-41 173.3 172 55.8
CANSAT78G1787 Cannabis sativa HOM05D003349 ORTHO05D003898 1.9e-41 172.9 172 57.0
CsaV3_4G013310 Cucumis sativus L. HOM05D003349 ORTHO05D003898 2.4e-41 172.6 172 55.8
Sed0005648 Sechium edule HOM05D003349 ORTHO05D003898 3.2e-41 172.2 172 55.8
CiPaw.06G089600 Carya illinoinensis HOM05D003349 ORTHO05D003898 4.2e-41 171.8 165 58.8
CiPaw.09G001500 Carya illinoinensis HOM05D003349 ORTHO05D003898 4.2e-41 171.8 172 57.0
Haze_19412 Corylus avellana HOM05D003349 ORTHO05D003898 4.2e-41 171.8 172 56.4
PGR042G2987 Punica granatum HOM05D003349 ORTHO05D003898 7.1e-41 171.0 144 63.9
Glyma.19G110600 Glycine max HOM05D003349 ORTHO05D003898 9.3e-41 170.6 172 57.0
Sabra19G0041800 Salix brachista HOM05D003349 ORTHO05D003898 2.1e-40 169.5 172 55.2
Sabra13G0052200 Salix brachista HOM05D003349 ORTHO05D003898 3.5e-40 168.7 165 57.6
Atru.chr2.1365 Acer truncatum HOM05D003349 ORTHO05D003898 4.6e-40 168.3 140 63.6
Potri.019G033900 Populus trichocarpa HOM05D003349 ORTHO05D003898 4.6e-40 168.3 172 55.2
CANSAT56G0778 Cannabis sativa HOM05D003349 ORTHO05D003898 6.0e-40 167.9 140 63.6
Potri.013G058700 Populus trichocarpa HOM05D003349 ORTHO05D003898 6.0e-40 167.9 172 55.2
Manes.08G150100 Manihot esculenta HOM05D003349 ORTHO05D003898 7.8e-40 167.5 172 55.2
Eucgr.A02093 Eucalyptus grandis HOM05D003349 ORTHO05D003898 1.3e-39 166.8 144 60.4
Manes.09G142100 Manihot esculenta HOM05D003349 ORTHO05D003898 1.3e-39 166.8 172 55.2
Lalb_Chr21g0317171 Lupinus albus HOM05D003349 ORTHO05D003898 1.7e-39 166.4 174 55.7
arahy.Tifrunner.gnm1.ann1.GFD0T8 Arachis hypogaea HOM05D003349 ORTHO05D003898 3.0e-39 165.6 172 55.2
arahy.Tifrunner.gnm1.ann1.N26BUN Arachis hypogaea HOM05D003349 ORTHO05D003898 3.0e-39 165.6 172 55.2
VMungo1383G1871 Vigna mungo HOM05D003349 ORTHO05D003898 3.0e-39 165.6 172 55.2
Glyma.02G071700 Glycine max HOM05D003349 ORTHO05D003898 8.7e-39 164.1 174 55.2
Glyma.16G041800 Glycine max HOM05D003349 ORTHO05D003898 8.7e-39 164.1 144 61.1
THA.LOC104821510 Tarenaya hassleriana HOM05D003349 ORTHO05D003898 1.9e-38 162.9 172 54.1
GSVIVG01033391001 Vitis vinifera HOM05D003349 ORTHO05D003898 3.3e-38 162.2 139 61.2
Glyma.16G152900 Glycine max HOM05D003349 ORTHO05D003898 4.3e-38 161.8 174 55.2
Phvul.004G079400 Phaseolus vulgaris HOM05D003349 ORTHO05D003898 9.6e-38 160.6 174 54.6
Lalb_Chr02g0157061 Lupinus albus HOM05D003349 ORTHO05D003898 1.3e-37 160.2 144 59.7
Sp6g02300 Schrenkiella parvula HOM05D003349 ORTHO05D003898 2.1e-37 159.5 172 52.9
Actinidia22087 Actinidia chinensis HOM05D003349 ORTHO05D003898 2.8e-37 159.1 172 52.9
Dinv37011 Davidia involucrata HOM05D003349 ORTHO05D003898 2.8e-37 159.1 172 52.9
Lj2g0007320 Lotus japonicus HOM05D003349 ORTHO05D003898 6.2e-37 157.9 174 53.4
Phvul.001G110000 Phaseolus vulgaris HOM05D003349 ORTHO05D003898 6.2e-37 157.9 140 60.7
TAR369G0075 Trochodendron aralioides HOM05D003349 ORTHO05D003898 6.2e-37 157.9 172 51.7
Lalb_Chr06g0173961 Lupinus albus HOM05D003349 ORTHO05D003898 1.1e-36 157.1 174 54.6
Thhalv10028548m.g Eutrema salsugineum HOM05D003349 ORTHO05D003898 1.4e-36 156.8 172 52.9
Medtr6g032885 Medicago truncatula HOM05D003349 ORTHO05D003898 1.4e-36 156.8 174 51.7
AT1G54385 Arabidopsis thaliana HOM05D003349 ORTHO05D003898 1.8e-36 156.4 172 53.5
CSS0039180 Camellia sinensis var. sinensis HOM05D003349 ORTHO05D003898 1.8e-36 156.4 173 52.6
TPR.G34626 Trifolium pratense HOM05D003349 ORTHO05D003898 3.1e-36 155.6 174 52.3
Carub.0002s0958 Capsella rubella HOM05D003349 ORTHO05D003898 6.9e-36 154.5 172 52.3
Hund19241 Selenicereus undatus HOM05D003349 ORTHO05D003898 6.9e-36 154.5 172 51.7
Nn2g15886 Nelumbo nucifera HOM05D003349 ORTHO05D003898 1.2e-35 153.7 172 51.2
Psat1g096120 Pisum sativum HOM05D003349 ORTHO05D003898 1.2e-35 153.7 174 51.1
EL10Ac3g06814 Beta vulgaris HOM05D003349 ORTHO05D003898 1.5e-35 153.3 140 58.6
Lsat_1_v5_gn_2_57641 Lactuca sativa HOM05D003349 ORTHO05D003898 1.5e-35 153.3 172 52.3
Actinidia30557 Actinidia chinensis HOM05D003349 ORTHO05D003898 2.0e-35 152.9 172 51.2
Rhsim03G0001200 Rhododendron simsii HOM05D003349 ORTHO05D003898 2.6e-35 152.5 140 60.7
TAR633G2041 Trochodendron aralioides HOM05D003349 ORTHO05D003898 2.6e-35 152.5 172 50.6
ECA238G0201 Erigeron canadensis HOM05D003349 ORTHO05D003898 3.4e-35 152.1 139 61.2
Hma1.2p1_0376F.1_g139170 Hydrangea macrophylla HOM05D003349 ORTHO05D003898 3.4e-35 152.1 172 50.0
BcaB01g02049 Brassica carinata HOM05D003349 ORTHO05D003898 4.5e-35 151.8 173 53.2
Lj1g0027644 Lotus japonicus HOM05D003349 ORTHO05D003898 5.8e-35 151.4 173 53.2
CARHR055490 Cardamine hirsuta HOM05D003349 ORTHO05D003898 7.6e-35 151.0 172 51.2
FAN13G1757 Fragaria x ananassa HOM05D003349 ORTHO05D003898 7.6e-35 151.0 144 58.3
Lj1A1137T83 Lonicera japonica HOM05D003349 ORTHO05D003898 9.9e-35 150.6 172 49.4
vmacro12571 Vaccinium macrocarpon HOM05D003349 ORTHO05D003898 9.9e-35 150.6 140 59.3
AUR62032685 Chenopodium quinoa HOM05D003349 ORTHO05D003898 1.3e-34 150.2 140 57.1
TAR636G3347 Trochodendron aralioides HOM05D003349 ORTHO05D003898 1.3e-34 150.2 172 50.0
Nn7g35824 Nelumbo nucifera HOM05D003349 ORTHO05D003898 2.2e-34 149.4 172 48.3
SGA_v2.0_scaffold24G10518 Striga asiatica HOM05D003349 ORTHO05D003898 2.2e-34 149.4 172 51.2
BcaNung04050 Brassica carinata HOM05D003349 ORTHO05D003898 2.9e-34 149.1 173 53.2
C09p01910 Brassica napus HOM05D003349 ORTHO05D003898 2.9e-34 149.1 173 53.2
BolC9t53126H Brassica oleracea HOM05D003349 ORTHO05D003898 2.9e-34 149.1 173 53.2
Ca_25618_v3 Cicer arietinum L. HOM05D003349 ORTHO05D003898 2.9e-34 149.1 174 50.6
PSO339G2750 Papaver somniferum HOM05D003349 ORTHO05D003898 3.8e-34 148.7 172 50.0
PSO384G0567 Papaver somniferum HOM05D003349 ORTHO05D003898 3.8e-34 148.7 172 50.0
BraA09t35838Z Brassica rapa HOM05D003349 ORTHO05D003898 4.9e-34 148.3 173 52.0
A09p01870 Brassica napus HOM05D003349 ORTHO05D003898 8.4e-34 147.5 173 52.0
Aqoxy1G00500 Aquilegia oxysepala HOM05D003349 ORTHO05D003898 1.1e-33 147.1 140 57.1
AUR62032062 Chenopodium quinoa HOM05D003349 ORTHO05D003898 1.1e-33 147.1 140 56.4
Ca_21768_v3 Cicer arietinum L. HOM05D003349 ORTHO05D003898 1.1e-33 147.1 174 50.6
DCAR_009680 Daucus carota HOM05D003349 ORTHO05D003898 2.4e-33 146.0 172 50.0
Sc13g0002710 Simmondsia chinensis HOM05D003349 ORTHO05D003898 4.2e-33 145.2 144 55.6
PGSC0003DMG400008643 Solanum tuberosum HOM05D003349 ORTHO05D003898 5.4e-33 144.8 172 50.0
TAR623G1645 Trochodendron aralioides HOM05D003349 ORTHO05D003898 5.4e-33 144.8 172 50.0
Cc06_g22870 Coffea canephora HOM05D003349 ORTHO05D003898 7.1e-33 144.4 172 50.6
Peaxi162Scf00076g01031 Petunia axillaris HOM05D003349 ORTHO05D003898 7.1e-33 144.4 172 50.0
SalBow6G1268 Salvia bowleyana HOM05D003349 ORTHO05D003898 1.6e-32 143.3 172 49.4
HanXRQChr16g0523881 Helianthus annuus HOM05D003349 ORTHO05D003898 2.1e-32 142.9 172 49.4
Nitab4.5_0000001g0070 Nicotiana tabacum HOM05D003349 ORTHO05D003898 2.1e-32 142.9 172 49.4
Nitab4.5_0002825g0010 Nicotiana tabacum HOM05D003349 ORTHO05D003898 2.1e-32 142.9 172 49.4
SGA_v2.0_scaffold118G32450 Striga asiatica HOM05D003349 ORTHO05D003898 2.1e-32 142.9 172 48.8
Solyc03g062700.4 Solanum lycopersicum HOM05D003349 ORTHO05D003898 2.7e-32 142.5 172 49.4
DCAR_019880 Daucus carota HOM05D003349 ORTHO05D003898 3.5e-32 142.1 172 50.0
CAN.G317.13 Capsicum annuum HOM05D003349 ORTHO05D003898 4.6e-32 141.7 140 57.1
Sc19g0006470 Simmondsia chinensis HOM05D003349 ORTHO05D003898 6.0e-32 141.4 172 48.8
Migut.J01894 Erythranthe guttata HOM05D003349 ORTHO05D003898 7.9e-32 141.0 140 55.7
HanXRQChr01g0024711 Helianthus annuus HOM05D003349 ORTHO05D003898 7.9e-32 141.0 172 48.8
THA.LOC104820732 Tarenaya hassleriana HOM05D003349 ORTHO05D003898 7.9e-32 141.0 144 52.8
ECA285G0003 Erigeron canadensis HOM05D003349 ORTHO05D003898 1.0e-31 140.6 172 48.8
Sopen03g015010 Solanum pennellii HOM05D003349 ORTHO05D003898 1.3e-31 140.2 172 48.8
THA.LOC104802863 Tarenaya hassleriana HOM05D003349 ORTHO05D003898 1.8e-31 139.8 140 55.0
Oeu060005.1 Olea europaea HOM05D003349 ORTHO05D003898 2.3e-31 139.4 140 55.0
unitig_899.g15643 Utricularia gibba HOM05D003349 ORTHO05D003898 2.3e-31 139.4 172 48.8
MSTRG.19938 Avicennia marina HOM05D003349 ORTHO05D003898 6.7e-31 137.9 172 47.7
Lj2A357T88 Lonicera japonica HOM05D003349 ORTHO05D003898 6.7e-31 137.9 173 47.4
CARHR078110 Cardamine hirsuta HOM05D003349 ORTHO05D003898 1.9e-30 136.3 142 51.4
Eucgr.K01495 Eucalyptus grandis HOM05D003349 ORTHO05D003898 4.3e-30 135.2 107 65.4
Lsat_1_v5_gn_1_59620 Lactuca sativa HOM05D003349 ORTHO05D003898 1.3e-29 133.7 172 47.1
PGR142G2675 Punica granatum HOM05D003349 ORTHO05D003898 2.1e-29 132.9 140 53.6
Sp3g02940 Schrenkiella parvula HOM05D003349 ORTHO05D003898 2.1e-29 132.9 166 46.4
arahy.Tifrunner.gnm1.ann1.CJ7Z8Q Arachis hypogaea HOM05D003349 ORTHO05D003898 2.8e-29 132.5 140 56.4
arahy.Tifrunner.gnm1.ann1.L5U228 Arachis hypogaea HOM05D003349 ORTHO05D003898 2.8e-29 132.5 140 56.4
CDE07G0844 Ceratophyllum demersum HOM05D003349 ORTHO05D003898 2.8e-29 132.5 163 47.2
Carub.0003s0322 Capsella rubella HOM05D003349 ORTHO05D003898 3.7e-29 132.1 142 50.0
A05p43390 Brassica napus HOM05D003349 ORTHO05D003898 4.8e-29 131.7 142 50.0
HanXRQChr09g0266371 Helianthus annuus HOM05D003349 ORTHO05D003898 4.8e-29 131.7 172 45.3
AL3G13880 Arabidopsis lyrata HOM05D003349 ORTHO05D003898 8.1e-29 131.0 142 49.3
C05p63090 Brassica napus HOM05D003349 ORTHO05D003898 8.1e-29 131.0 142 50.0
Thhalv10022309m.g Eutrema salsugineum HOM05D003349 ORTHO05D003898 8.1e-29 131.0 142 50.0
Oeu012406.1 Olea europaea HOM05D003349 ORTHO05D003898 8.1e-29 131.0 140 52.1
BolC5t34961H Brassica oleracea HOM05D003349 ORTHO05D003898 1.1e-28 130.6 142 49.3
BraA05t23079Z Brassica rapa HOM05D003349 ORTHO05D003898 1.1e-28 130.6 142 49.3
AT3G03970 Arabidopsis thaliana HOM05D003349 ORTHO05D003898 1.4e-28 130.2 166 45.2
BcaC05g30298 Brassica carinata HOM05D003349 ORTHO05D003898 1.4e-28 130.2 142 48.6
CDE06G0484 Ceratophyllum demersum HOM05D003349 ORTHO05D003898 1.4e-28 130.2 163 46.6
HPP92_004178 Vanilla planifolia HOM05D003349 ORTHO05D003898 1.8e-28 129.8 165 44.8
ATR0697G133 Amborella trichopoda HOM05D003349 ORTHO05D003898 4.0e-28 128.6 140 49.3
BcaC05g29887 Brassica carinata HOM05D003349 ORTHO05D003898 1.2e-27 127.1 141 48.2
BcaC09g47770 Brassica carinata HOM05D003349 ORTHO05D003898 5.8e-27 124.8 140 49.3
HanXRQChr03g0090421 Helianthus annuus HOM05D003349 ORTHO05D003898 5.8e-27 124.8 138 51.4
A01p41230 Brassica napus HOM05D003349 ORTHO05D003898 1.3e-26 123.6 142 47.9
BNapus_Darmor_BZH_scaffold_78p00480 Brassica napus HOM05D003349 ORTHO05D003898 1.3e-26 123.6 142 47.9
Os11g0580000 Oryza sativa ssp. japonica HOM05D003349 ORTHO05D003898 1.3e-26 123.6 172 41.9
Aa31LG5G14550 Aethionema arabicum HOM05D003349 ORTHO05D003898 2.9e-26 122.5 163 42.3
AL1G64640 Arabidopsis lyrata HOM05D003349 ORTHO05D003898 2.1e-24 116.3 172 44.2
BraA01t04546Z Brassica rapa HOM05D003349 ORTHO05D003898 2.1e-24 116.3 142 47.2
Aqoxy2G00587 Aquilegia oxysepala HOM05D003349 ORTHO05D003898 4.6e-24 115.2 144 46.5
BolC1t05788H Brassica oleracea HOM05D003349 ORTHO05D003898 6.0e-24 114.8 140 47.1
BolC1t05779H Brassica oleracea HOM05D003349 ORTHO05D003898 1.8e-23 113.2 140 45.7
Zm00001eb200470 Zea mays HOM05D003349 ORTHO05D003898 5.1e-23 111.7 174 39.7
SEGI_12350 Sequoiadendron giganteum HOM05D003349 ORTHO05D003898 1.1e-20 104.0 135 44.4
MD12G1003000 Malus domestica HOM05D003349 ORTHO05D003898 7.6e-19 97.8 72 68.1
SHI21767 Sapria himalayana HOM05D003349 ORTHO05D003898 1.0e-18 97.4 172 39.5
BraA09t41584Z Brassica rapa HOM05D003349 ORTHO05D003898 1.9e-17 93.2 119 47.9
arahy.Tifrunner.gnm1.ann1.0MAW8U Arachis hypogaea HOM05D003349 ORTHO05D003898 6.1e-16 88.2 127 43.3
SEGI_09484 Sequoiadendron giganteum HOM05D003349 ORTHO05D003898 6.1e-16 88.2 130 40.8
SEGI_29772 Sequoiadendron giganteum HOM05D003349 ORTHO05D003898 6.1e-16 88.2 130 40.8
SEGI_06046 Sequoiadendron giganteum HOM05D003349 ORTHO05D003898 1.0e-15 87.4 127 40.9
Zm00001eb032360 Zea mays HOM05D003349 ORTHO05D003898 1.3e-15 87.0 132 37.1
Os12g0624800 Oryza sativa ssp. japonica HOM05D003349 ORTHO05D003898 5.7e-14 81.6 170 33.5
BcaC05g30237 Brassica carinata HOM05D003349 ORTHO05D003898 1.4e-12 77.0 132 35.6
Mapoly0001s0286 Marchantia polymorpha HOM05D003349 ORTHO05D003898 1.4e-09 67.0 133 34.6
Pp3c18_19210 Physcomitrium patens HOM05D003349 ORTHO05D003898 1.9e-09 66.6 125 35.2
ATR0605G207 Amborella trichopoda HOM05D003349 ORTHO05D003898 4.6e-08 62.0 132 31.1
Pp3c19_3520 Physcomitrium patens HOM05D003349 ORTHO05D003898 6.1e-08 61.6 127 31.5
Pp3c19_3524 Physcomitrium patens HOM05D003349 ORTHO05D003898 6.1e-08 61.6 127 31.5
AagrBONN_evm.TU.Sc2ySwM_362.243 Anthoceros agrestis HOM05D003349 ORTHO05D003898 1.1e-06 57.4 157 26.8
BcaC05g29361 Brassica carinata HOM05D003349 ORTHO05D003898 3.3e-06 55.8 61 45.9
C05p56450 Brassica napus HOM05D003349 ORTHO05D003898 3.3e-06 55.8 61 45.9


User provided reference genes

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