Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 6.8e-28 127.1 90 100.0
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 2.9e-18 95.1 67 77.6
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 4.2e-17 91.3 58 77.6
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 5.4e-17 90.9 58 84.5
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 5.4e-17 90.9 58 84.5
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 1.6e-16 89.4 60 80.0
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 7.8e-16 87.0 59 76.3
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 3.9e-15 84.7 54 77.8
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 3.9e-15 84.7 55 76.4
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 5.1e-15 84.3 58 75.9
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.5e-14 82.8 46 89.1
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 2.5e-14 82.0 52 76.9
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 2.5e-14 82.0 52 76.9
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 2.5e-14 82.0 52 76.9
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 2.5e-14 82.0 52 76.9
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 4.3e-14 81.3 58 74.1
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 5.6e-14 80.9 59 67.8
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 9.6e-14 80.1 52 75.0
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 9.6e-14 80.1 52 75.0
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 9.6e-14 80.1 58 67.2
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 9.6e-14 80.1 70 61.4
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 1.2e-13 79.7 59 69.5
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 1.2e-13 79.7 52 75.0
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 2.1e-13 79.0 57 66.7
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 2.8e-13 78.6 60 68.3
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 3.6e-13 78.2 48 77.1
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 4.7e-13 77.8 48 79.2
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 6.2e-13 77.4 52 71.2
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 6.2e-13 77.4 50 74.0
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 6.2e-13 77.4 51 78.4
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 8.1e-13 77.0 50 74.0
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 1.1e-12 76.6 60 61.7
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 1.1e-12 76.6 47 76.6
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.1e-12 76.6 52 71.2
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.1e-12 76.6 52 69.2
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 1.1e-12 76.6 52 71.2
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 1.4e-12 76.3 46 78.3
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 1.8e-12 75.9 57 68.4
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 2.4e-12 75.5 52 71.2
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 3.1e-12 75.1 46 80.4
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 4.0e-12 74.7 45 77.8
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 4.0e-12 74.7 52 71.2
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 5.3e-12 74.3 48 77.1
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 5.3e-12 74.3 50 72.0
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 5.3e-12 74.3 50 72.0
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 6.9e-12 73.9 52 69.2
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 6.9e-12 73.9 43 81.4
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 1.2e-11 73.2 57 64.9
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 2.0e-11 72.4 54 70.4
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 3.4e-11 71.6 54 64.8
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 3.4e-11 71.6 49 67.3
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 4.4e-11 71.2 50 68.0
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 5.8e-11 70.9 59 59.3
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 7.6e-11 70.5 51 66.7
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 7.6e-11 70.5 45 77.8
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 7.6e-11 70.5 55 69.1
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 9.9e-11 70.1 47 72.3
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 9.9e-11 70.1 52 65.4
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 9.9e-11 70.1 52 61.5
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 1.3e-10 69.7 55 67.3
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 1.7e-10 69.3 47 72.3
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 2.2e-10 68.9 56 67.9
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 2.2e-10 68.9 56 64.3
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 2.9e-10 68.6 48 68.8
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 6.4e-10 67.4 45 68.9
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 6.4e-10 67.4 43 74.4
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 8.4e-10 67.0 50 62.0
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 8.4e-10 67.0 55 65.5
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 1.4e-09 66.2 55 65.5
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 1.9e-09 65.9 52 61.5
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 3.2e-09 65.1 57 59.6
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 3.2e-09 65.1 50 62.0
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 3.2e-09 65.1 52 63.5
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 3.2e-09 65.1 48 64.6
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 3.2e-09 65.1 50 68.0
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 5.4e-09 64.3 50 62.0
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 5.4e-09 64.3 43 74.4
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 5.4e-09 64.3 44 75.0
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 1.2e-08 63.2 48 62.5
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 1.6e-08 62.8 57 61.4
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 2.1e-08 62.4 48 64.6
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 2.7e-08 62.0 50 66.0
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 2.7e-08 62.0 50 64.0
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 3.5e-08 61.6 57 59.6
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 6.0e-08 60.8 50 64.0
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 5.1e-07 57.8 58 55.2
Migut.K01062 Erythranthe guttata HOM05D007833 ORTHO05D009855 1.1e-06 56.6 44 68.2
THA.LOC109116323 Tarenaya hassleriana HOM05D007833 ORTHO05D009855 5.6e-06 54.3 38 71.1


User provided reference genes

Program Settings