Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1244500 Malus domestica HOM05D004367 ORTHO05D004937 1.2e-138 496.5 245 100.0
MD03G1226500 Malus domestica HOM05D004367 ORTHO05D004937 3.3e-93 345.5 292 64.7
Prupe.4G182900 Prunus persica HOM05D004367 ORTHO05D004937 8.2e-84 314.3 292 60.3
FvH4_3g20190 Fragaria vesca HOM05D004367 ORTHO05D004937 8.6e-57 224.6 295 47.5
RcHm_v2.0_Chr5g0034001 Rosa chinensis HOM05D004367 ORTHO05D004937 1.1e-56 224.2 294 46.9
FAN16G0302 Fragaria x ananassa HOM05D004367 ORTHO05D004937 6.1e-55 218.4 295 45.8
ClCG11G018120 Citrullus lanatus HOM05D004367 ORTHO05D004937 2.3e-54 216.5 297 44.4
FAN21G3330 Fragaria x ananassa HOM05D004367 ORTHO05D004937 6.8e-54 214.9 295 45.8
Lj3g0015758 Lotus japonicus HOM05D004367 ORTHO05D004937 1.5e-53 213.8 290 45.9
CsaV3_4G033760 Cucumis sativus L. HOM05D004367 ORTHO05D004937 2.0e-53 213.4 296 43.9
Medtr2g079330 Medicago truncatula HOM05D004367 ORTHO05D004937 4.9e-52 208.8 282 45.7
MELO3C016705.2 Cucumis melo HOM05D004367 ORTHO05D004937 4.1e-51 205.7 297 42.8
TWI38G0759 Tripterygium wilfordii HOM05D004367 ORTHO05D004937 9.2e-51 204.5 299 45.8
Sed0004687 Sechium edule HOM05D004367 ORTHO05D004937 2.7e-50 203.0 313 42.2
Cfa020594 Carpinus fangiana HOM05D004367 ORTHO05D004937 5.9e-50 201.8 293 43.7
Manes.03G110700 Manihot esculenta HOM05D004367 ORTHO05D004937 7.8e-50 201.4 297 45.1
Atru.chr2.2651 Acer truncatum HOM05D004367 ORTHO05D004937 1.3e-49 200.7 293 42.7
Eucgr.F01119 Eucalyptus grandis HOM05D004367 ORTHO05D004937 1.3e-49 200.7 299 43.1
Dinv04310 Davidia involucrata HOM05D004367 ORTHO05D004937 3.8e-49 199.1 285 43.9
Atru.chr2.2673 Acer truncatum HOM05D004367 ORTHO05D004937 1.1e-48 197.6 293 42.3
TWI39G0928 Tripterygium wilfordii HOM05D004367 ORTHO05D004937 1.1e-48 197.6 297 45.1
Lsat_1_v5_gn_5_127821 Lactuca sativa HOM05D004367 ORTHO05D004937 4.3e-48 195.7 294 43.9
Psat5g242760 Pisum sativum HOM05D004367 ORTHO05D004937 5.6e-48 195.3 289 42.6
Ciclev10008024m.g Citrus clementina HOM05D004367 ORTHO05D004937 7.3e-48 194.9 298 42.6
Rhsim06G0197900 Rhododendron simsii HOM05D004367 ORTHO05D004937 9.5e-48 194.5 292 43.5
HanXRQChr12g0361521 Helianthus annuus HOM05D004367 ORTHO05D004937 2.1e-47 193.4 308 42.2
Glyma.13G277700 Glycine max HOM05D004367 ORTHO05D004937 6.1e-47 191.8 286 42.0
Thecc.07G087300 Theobroma cacao HOM05D004367 ORTHO05D004937 8.0e-47 191.4 293 43.3
Nitab4.5_0000207g0150 Nicotiana tabacum HOM05D004367 ORTHO05D004937 1.4e-46 190.7 290 40.0
CSS0040505 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 1.8e-46 190.3 291 42.6
Ca_01836_v3 Cicer arietinum L. HOM05D004367 ORTHO05D004937 2.3e-46 189.9 292 43.8
Gorai.002G071000 Gossypium raimondii HOM05D004367 ORTHO05D004937 8.9e-46 188.0 294 42.5
Cc05_g12110 Coffea canephora HOM05D004367 ORTHO05D004937 1.2e-45 187.6 297 40.1
Lj1A844G36 Lonicera japonica HOM05D004367 ORTHO05D004937 1.2e-45 187.6 292 42.5
Actinidia12812 Actinidia chinensis HOM05D004367 ORTHO05D004937 1.5e-45 187.2 289 42.6
Duzib213G0391 Durio zibethinus HOM05D004367 ORTHO05D004937 2.0e-45 186.8 296 42.6
Gohir.A01G064120 Gossypium hirsutum HOM05D004367 ORTHO05D004937 2.0e-45 186.8 293 42.0
CiPaw.11G168700 Carya illinoinensis HOM05D004367 ORTHO05D004937 2.6e-45 186.4 293 42.3
Gohir.D01G051200 Gossypium hirsutum HOM05D004367 ORTHO05D004937 2.6e-45 186.4 293 42.0
vmacro18312 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 4.4e-45 185.7 290 42.4
arahy.Tifrunner.gnm1.ann1.6ZWE2K Arachis hypogaea HOM05D004367 ORTHO05D004937 1.7e-44 183.7 292 41.1
arahy.Tifrunner.gnm1.ann1.SV3A8G Arachis hypogaea HOM05D004367 ORTHO05D004937 2.9e-44 183.0 292 41.1
Hma1.2p1_0480F.1_g161800 Hydrangea macrophylla HOM05D004367 ORTHO05D004937 3.7e-44 182.6 291 39.5
Hund22921 Selenicereus undatus HOM05D004367 ORTHO05D004937 6.4e-44 181.8 296 41.6
PGSC0003DMG400025036 Solanum tuberosum HOM05D004367 ORTHO05D004937 8.3e-44 181.4 291 41.6
QL08p021548 Quercus lobata HOM05D004367 ORTHO05D004937 1.1e-43 181.0 291 41.2
VMungo1080G0845 Vigna mungo HOM05D004367 ORTHO05D004937 1.1e-43 181.0 286 41.6
Nitab4.5_0002383g0110 Nicotiana tabacum HOM05D004367 ORTHO05D004937 2.4e-43 179.9 291 39.2
GSVIVG01014349001 Vitis vinifera HOM05D004367 ORTHO05D004937 2.4e-43 179.9 288 39.9
Oeu005412.1 Olea europaea HOM05D004367 ORTHO05D004937 4.1e-43 179.1 297 38.0
vmacro11860 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 4.1e-43 179.1 316 38.0
Hma1.2p1_2210F.1_g317160 Hydrangea macrophylla HOM05D004367 ORTHO05D004937 7.0e-43 178.3 296 38.9
DCAR_017144 Daucus carota HOM05D004367 ORTHO05D004937 1.2e-42 177.6 291 42.6
Migut.M00812 Erythranthe guttata HOM05D004367 ORTHO05D004937 1.2e-42 177.6 294 39.1
THA.LOC104799923 Tarenaya hassleriana HOM05D004367 ORTHO05D004937 1.2e-42 177.6 305 40.3
Lalb_Chr25g0286441 Lupinus albus HOM05D004367 ORTHO05D004937 2.7e-42 176.4 272 41.2
Solyc10g006990.3 Solanum lycopersicum HOM05D004367 ORTHO05D004937 2.7e-42 176.4 294 40.5
Sopen10g002900 Solanum pennellii HOM05D004367 ORTHO05D004937 3.5e-42 176.0 294 40.1
Sc16g0006960 Simmondsia chinensis HOM05D004367 ORTHO05D004937 4.6e-42 175.6 284 40.1
ECA234G0664 Erigeron canadensis HOM05D004367 ORTHO05D004937 5.9e-42 175.3 292 39.0
MSTRG.15226 Avicennia marina HOM05D004367 ORTHO05D004937 1.3e-41 174.1 309 38.8
Potri.001G400800 Populus trichocarpa HOM05D004367 ORTHO05D004937 3.0e-41 172.9 304 41.1
Sabra16G0262900 Salix brachista HOM05D004367 ORTHO05D004937 3.0e-41 172.9 294 42.2
FAN25G3266 Fragaria x ananassa HOM05D004367 ORTHO05D004937 1.1e-40 171.0 169 56.8
Nn1g06556 Nelumbo nucifera HOM05D004367 ORTHO05D004937 1.1e-40 171.0 285 40.0
Phvul.005G070800 Phaseolus vulgaris HOM05D004367 ORTHO05D004937 1.1e-40 171.0 286 39.5
MBI07_g32654_MAGBIO Magnolia biondii HOM05D004367 ORTHO05D004937 2.5e-40 169.9 284 40.5
AT5G53770 Arabidopsis thaliana HOM05D004367 ORTHO05D004937 5.6e-40 168.7 286 40.2
AL8G28710 Arabidopsis lyrata HOM05D004367 ORTHO05D004937 7.3e-40 168.3 289 40.5
AUR62034287 Chenopodium quinoa HOM05D004367 ORTHO05D004937 7.3e-40 168.3 269 40.9
TAR624G0790 Trochodendron aralioides HOM05D004367 ORTHO05D004937 2.1e-39 166.8 287 40.8
PSO210G1788 Papaver somniferum HOM05D004367 ORTHO05D004937 4.0e-38 162.5 289 37.7
SGA_v2.0_scaffold73G24268 Striga asiatica HOM05D004367 ORTHO05D004937 5.2e-38 162.2 283 38.9
Aqoxy4G00819 Aquilegia oxysepala HOM05D004367 ORTHO05D004937 2.0e-37 160.2 302 38.7
AUR62029381 Chenopodium quinoa HOM05D004367 ORTHO05D004937 2.0e-37 160.2 319 36.7
Cpa.g.sc80.55 Carica papaya HOM05D004367 ORTHO05D004937 2.6e-37 159.8 300 37.3
Ah.06g184060 Amaranthus hybridus HOM05D004367 ORTHO05D004937 3.4e-37 159.5 263 38.4
BcaB08g35738 Brassica carinata HOM05D004367 ORTHO05D004937 5.8e-37 158.7 291 38.8
Carub.0008s1407 Capsella rubella HOM05D004367 ORTHO05D004937 5.8e-37 158.7 304 38.5
SGA_v2.0_scaffold34G13821 Striga asiatica HOM05D004367 ORTHO05D004937 5.8e-37 158.7 283 37.1
A10p11150 Brassica napus HOM05D004367 ORTHO05D004937 7.5e-37 158.3 291 38.5
BraA10t43208Z Brassica rapa HOM05D004367 ORTHO05D004937 7.5e-37 158.3 291 38.5
EL10Ac4g08166 Beta vulgaris HOM05D004367 ORTHO05D004937 9.8e-37 157.9 285 38.6
BcaC04g20419 Brassica carinata HOM05D004367 ORTHO05D004937 2.9e-36 156.4 291 38.1
C09p43730 Brassica napus HOM05D004367 ORTHO05D004937 2.9e-36 156.4 291 38.1
BolC9t57258H Brassica oleracea HOM05D004367 ORTHO05D004937 2.9e-36 156.4 291 38.1
BcaB05g22072 Brassica carinata HOM05D004367 ORTHO05D004937 3.2e-35 152.9 290 37.9
Dinv20169 Davidia involucrata HOM05D000397 ORTHO05D004937 4.1e-35 152.5 231 42.0
Thhalv10013073m.g Eutrema salsugineum HOM05D004367 ORTHO05D004937 9.2e-35 151.4 290 37.6
Aa31LG3G10140 Aethionema arabicum HOM05D004367 ORTHO05D004937 1.2e-34 151.0 301 37.9
Sp6g15840 Schrenkiella parvula HOM05D004367 ORTHO05D004937 1.2e-34 151.0 280 38.9
TPR.G38993 Trifolium pratense HOM05D004367 ORTHO05D004937 1.2e-34 151.0 202 42.6
PGR083G2352 Punica granatum HOM05D004367 ORTHO05D004937 4.6e-34 149.1 167 53.9
CSS0040030 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 6.0e-34 148.7 202 44.1
COL.COLO4_09395 Corchorus olitorius HOM05D004367 ORTHO05D004937 6.0e-34 148.7 173 51.4
Zm00001eb157140 Zea mays HOM05D004367 ORTHO05D004937 1.1e-32 144.4 298 36.2
HPP92_008014 Vanilla planifolia HOM05D004367 ORTHO05D004937 3.3e-32 142.9 291 35.7
ATR0730G126 Amborella trichopoda HOM05D004367 ORTHO05D004937 1.2e-31 141.0 285 36.8
arahy.Tifrunner.gnm1.ann1.9F49MR Arachis hypogaea HOM05D002009 ORTHO05D004937 8.3e-28 128.3 153 50.3
Ciclev10008854m.g Citrus clementina HOM05D004367 ORTHO05D004937 2.3e-25 120.2 193 39.4
Peaxi162Scf00027g02615 Petunia axillaris HOM05D004367 ORTHO05D004937 6.6e-25 118.6 244 38.5
SalBow8G3529 Salvia bowleyana HOM05D004367 ORTHO05D004937 6.6e-25 118.6 166 45.2
Oeu060551.2 Olea europaea HOM05D004367 ORTHO05D004937 7.3e-24 115.2 174 40.2
unitig_899.g15291 Utricularia gibba HOM05D004367 ORTHO05D004937 1.6e-23 114.0 262 30.9
Os01g0672700 Oryza sativa ssp. japonica HOM05D004367 ORTHO05D004937 8.1e-23 111.7 136 49.3
Gohir.A08G145700 Gossypium hirsutum HOM05D004367 ORTHO05D004937 2.0e-21 107.1 175 41.7
Haze_09419 Corylus avellana HOM05D004367 ORTHO05D004937 4.4e-21 105.9 125 51.2
Pp3c24_20390 Physcomitrium patens HOM05D004367 ORTHO05D004937 1.7e-20 104.0 216 33.3
HPP92_007964 Vanilla planifolia HOM05D004367 ORTHO05D004937 2.4e-19 100.1 174 36.8
CBR_g262 Chara braunii HOM05D004367 ORTHO05D004937 5.4e-19 99.0 201 34.3
CDE10G0244 Ceratophyllum demersum HOM05D004367 ORTHO05D004937 7.1e-19 98.6 168 38.1
AagrBONN_evm.TU.Sc2ySwM_362.745 Anthoceros agrestis HOM05D004367 ORTHO05D004937 9.2e-19 98.2 238 31.9
vmacro22868 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 3.5e-18 96.3 187 35.3
Mapoly0006s0037 Marchantia polymorpha HOM05D004367 ORTHO05D004937 6.0e-18 95.5 194 32.5
SMO356G0731 Selaginella moellendorffii HOM05D004367 ORTHO05D004937 6.0e-18 95.5 176 33.5
Gohir.A05G179700 Gossypium hirsutum HOM05D004367 ORTHO05D004937 3.9e-17 92.8 168 35.7
PRCOL_00005020 Prasinoderma coloniale HOM05D004367 ORTHO05D004937 9.6e-16 88.2 188 31.9
Cre17.g720750 Chlamydomonas reinhardtii HOM05D004367 ORTHO05D004937 1.8e-14 84.0 186 29.0
Hma1.2p1_0480F.1_g161810 Hydrangea macrophylla HOM05D004367 ORTHO05D004937 9.0e-14 81.6 71 57.7
SEGI_40468 Sequoiadendron giganteum HOM05D004367 ORTHO05D004937 9.0e-14 81.6 143 40.6
CARHR266920 Cardamine hirsuta HOM05D004367 ORTHO05D004937 4.4e-13 79.3 71 59.2
SalBow8G0254 Salvia bowleyana HOM05D004367 ORTHO05D004937 4.4e-13 79.3 43 79.1
TPR.G18089 Trifolium pratense HOM05D004367 ORTHO05D004937 9.9e-13 78.2 75 53.3
QL05p086116 Quercus lobata HOM05D004367 ORTHO05D004937 1.7e-12 77.4 48 75.0
CSS0006675 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 1.1e-11 74.7 43 74.4
CSS0018352 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 1.1e-11 74.7 43 74.4
SEGI_02461 Sequoiadendron giganteum HOM05D004367 ORTHO05D004937 1.9e-11 73.9 49 65.3
Actinidia09681 Actinidia chinensis HOM05D004367 ORTHO05D004937 5.4e-11 72.4 40 80.0
Gohir.A12G128900 Gossypium hirsutum HOM05D004367 ORTHO05D004937 9.3e-11 71.6 43 74.4
MCO11G842 Micromonas commoda HOM05D004367 ORTHO05D004937 1.3e-09 67.8 172 29.1
Dinv20794 Davidia involucrata HOM05D004367 ORTHO05D004937 1.5e-08 64.3 100 40.0
TPR.G38001 Trifolium pratense HOM05D004367 ORTHO05D004937 5.6e-08 62.4 52 55.8
MD10G1025000 Malus domestica HOM05D004367 ORTHO05D245742 2.4e-06 57.0 27 96.3
CBR_g39468 Chara braunii HOM05D004367 ORTHO05D004937 3.1e-06 56.6 44 59.1


User provided reference genes

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