Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 4.6e-111 404.8 244 100.0
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 7.0e-67 258.1 197 69.0
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 4.2e-64 248.8 198 80.8
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 3.9e-62 242.3 194 69.6
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 4.4e-61 238.8 198 77.3
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 9.7e-61 237.7 198 77.3
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 4.5e-58 228.8 198 80.8
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 4.5e-58 228.8 198 75.8
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 3.8e-57 225.7 198 77.3
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 2.7e-55 219.5 198 74.7
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 3.6e-55 219.2 198 77.8
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 8.0e-55 218.0 139 78.4
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 5.2e-54 215.3 198 81.8
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 2.2e-52 209.9 198 73.2
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 2.8e-52 209.5 198 68.7
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 4.8e-52 208.8 198 72.2
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 1.4e-51 207.2 200 73.0
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 5.3e-51 205.3 202 69.8
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 3.5e-50 202.6 199 72.9
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 3.5e-50 202.6 198 54.0
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 3.5e-50 202.6 198 70.2
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 5.9e-50 201.8 199 67.8
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 5.9e-50 201.8 275 59.3
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 7.7e-50 201.4 198 66.7
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 1.0e-49 201.1 198 68.2
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 2.2e-49 199.9 198 72.7
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 4.0e-46 189.1 198 64.6
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 8.8e-46 188.0 198 67.7
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 7.5e-45 184.9 139 66.2
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 3.7e-44 182.6 128 71.1
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 4.8e-44 182.2 139 65.5
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 1.8e-43 180.3 198 62.6
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 2.4e-43 179.9 198 63.6
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 7.0e-43 178.3 213 47.4
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 2.3e-41 173.3 137 64.2
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 8.6e-41 171.4 198 66.7
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 1.9e-40 170.2 198 62.6
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 9.5e-40 167.9 198 67.2
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 4.0e-38 162.5 198 57.1
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 4.0e-38 162.5 234 59.0
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 5.2e-38 162.2 198 60.1
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 5.2e-38 162.2 198 65.2
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 6.8e-38 161.8 198 66.7
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 1.2e-37 161.0 198 61.1
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 4.4e-37 159.1 198 65.7
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 4.4e-37 159.1 153 79.1
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 4.4e-37 159.1 198 57.1
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 5.7e-37 158.7 200 62.5
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 3.7e-36 156.0 198 59.6
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 3.7e-36 156.0 198 58.6
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 4.9e-36 155.6 209 60.3
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 4.9e-36 155.6 198 58.6
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 6.3e-36 155.2 198 57.6
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 8.3e-36 154.8 198 62.6
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 8.3e-36 154.8 163 51.5
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 1.4e-35 154.1 200 63.5
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 2.4e-35 153.3 198 65.7
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 3.1e-35 152.9 200 61.0
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 3.1e-35 152.9 198 65.2
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 4.1e-35 152.5 208 59.6
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 7.0e-35 151.8 198 60.6
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 9.2e-35 151.4 200 61.0
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 1.2e-34 151.0 198 59.1
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 5.9e-34 148.7 198 65.2
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 5.9e-34 148.7 198 65.7
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 7.8e-34 148.3 200 61.0
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 1.0e-33 147.9 198 64.1
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.7e-33 147.1 198 65.2
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 2.9e-33 146.4 198 41.9
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 2.9e-33 146.4 111 66.7
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 2.9e-33 146.4 198 63.1
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 5.0e-33 145.6 198 54.5
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 8.6e-33 144.8 205 59.0
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 8.6e-33 144.8 198 64.6
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 1.9e-32 143.7 198 54.5
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 4.3e-32 142.5 198 60.6
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 7.3e-32 141.7 197 54.3
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 9.5e-32 141.4 198 59.6
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 2.1e-31 140.2 198 61.6
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 3.6e-31 139.4 198 55.6
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 4.7e-31 139.0 204 55.4
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 1.0e-30 137.9 198 58.1
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 1.4e-30 137.5 242 53.3
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 1.8e-30 137.1 113 61.1
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 1.8e-30 137.1 198 55.6
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 6.8e-30 135.2 198 58.1
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 1.2e-29 134.4 198 57.1
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 1.5e-29 134.0 198 54.0
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 2.6e-29 133.3 198 55.1
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 2.6e-29 133.3 153 47.1
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 4.4e-29 132.5 198 58.6
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 7.5e-29 131.7 206 49.0
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 2.9e-28 129.8 198 53.5
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 2.9e-28 129.8 213 51.6
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 4.9e-28 129.0 199 58.3
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 5.4e-27 125.6 139 47.5
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 9.2e-27 124.8 198 54.5
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 5.6e-24 115.5 198 58.1
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 7.3e-24 115.2 139 45.3
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 8.0e-23 111.7 197 42.1
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 1.4e-22 110.9 198 50.0
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 1.8e-22 110.5 100 56.0
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 5.8e-21 105.5 82 64.6
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 2.2e-20 103.6 197 42.1
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 3.7e-20 102.8 198 55.1
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 4.6e-18 95.9 138 36.2
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 2.1e-15 87.0 119 72.3
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 2.1e-15 87.0 119 72.3
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 2.1e-15 87.0 119 72.3
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 9.9e-13 78.2 151 43.7
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 5.4e-11 72.4 46 73.9
Thecc.07G078700 Theobroma cacao HOM05D006220 ORTHO05D007590 2.5e-08 63.5 58 58.6
PSO017G1403 Papaver somniferum HOM05D006395 ORTHO05D007894 6.2e-07 58.9 89 36.0
Ciclev10024855m.g Citrus clementina HOM05D000101 ORTHO05D000089 1.4e-06 57.8 104 36.5
Duzib268G0075 Durio zibethinus HOM05D000101 ORTHO05D000089 1.8e-06 57.4 100 35.0
PSO170G0213 Papaver somniferum HOM05D006395 ORTHO05D007894 3.1e-06 56.6 89 36.0
Ciclev10024858m.g Citrus clementina HOM05D000101 ORTHO05D000089 4.0e-06 56.2 135 34.1
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 4.0e-06 56.2 68 39.7


User provided reference genes

Program Settings