Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1183600 Malus domestica HOM05D006814 ORTHO05D008613 3.3e-175 618.2 304 100.0
RcHm_v2.0_Chr7g0211071 Rosa chinensis HOM05D006814 ORTHO05D008613 1.4e-157 559.7 298 90.3
FAN04G0609 Fragaria x ananassa HOM05D006814 ORTHO05D008613 5.3e-157 557.8 298 89.3
FAN08G0276 Fragaria x ananassa HOM05D006814 ORTHO05D008613 5.3e-157 557.8 298 89.3
FAN18G2202 Fragaria x ananassa HOM05D006814 ORTHO05D008613 6.9e-157 557.4 298 89.3
FvH4_5g22650 Fragaria vesca HOM05D006814 ORTHO05D008613 1.5e-156 556.2 298 88.9
CiPaw.11G097800 Carya illinoinensis HOM05D006814 ORTHO05D008613 2.0e-156 555.8 302 88.1
Cfa012484 Carpinus fangiana HOM05D006814 ORTHO05D008613 3.4e-156 555.1 302 87.7
FAN18G0582 Fragaria x ananassa HOM05D006814 ORTHO05D008613 3.4e-156 555.1 298 88.9
CiPaw.11G096600 Carya illinoinensis HOM05D006814 ORTHO05D008613 5.8e-156 554.3 302 87.7
Thecc.03G307100 Theobroma cacao HOM05D006814 ORTHO05D008613 3.8e-155 551.6 302 86.8
Hma1.2p1_0586F.1_g183880 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 1.1e-154 550.1 302 87.4
CSS0047525 Camellia sinensis var. sinensis HOM05D006814 ORTHO05D008613 3.2e-154 548.5 302 87.1
Atru.chr6.1626 Acer truncatum HOM05D006814 ORTHO05D008613 9.3e-154 547.0 302 87.4
Ciclev10032236m.g Citrus clementina HOM05D006814 ORTHO05D008613 2.7e-153 545.4 302 84.1
Manes.02G107600 Manihot esculenta HOM05D006814 ORTHO05D008613 2.7e-153 545.4 304 84.5
Potri.001G139100 Populus trichocarpa HOM05D006814 ORTHO05D008613 2.7e-153 545.4 302 85.4
Sabra01G0108000 Salix brachista HOM05D006814 ORTHO05D008613 4.6e-153 544.7 302 85.1
Gohir.A08G154800 Gossypium hirsutum HOM05D006814 ORTHO05D008613 7.4e-151 537.3 298 85.2
GSVIVG01013112001 Vitis vinifera HOM05D006814 ORTHO05D008613 9.7e-151 537.0 298 85.2
Actinidia03355 Actinidia chinensis HOM05D006814 ORTHO05D008613 2.2e-150 535.8 302 84.8
Rhsim11G0018900 Rhododendron simsii HOM05D006814 ORTHO05D008613 4.8e-150 534.6 297 85.2
Duzib205G0392 Durio zibethinus HOM05D006814 ORTHO05D008613 6.3e-150 534.3 295 85.4
Gohir.D08G175300 Gossypium hirsutum HOM05D006814 ORTHO05D008613 6.3e-150 534.3 298 84.9
Nitab4.5_0000685g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 2.4e-149 532.3 302 83.8
CANSAT21G0682 Cannabis sativa HOM05D006814 ORTHO05D008613 3.1e-149 531.9 296 84.1
PGSC0003DMG400014801 Solanum tuberosum HOM05D006814 ORTHO05D008613 5.3e-149 531.2 302 82.8
Peaxi162Scf00170g01111 Petunia axillaris HOM05D006814 ORTHO05D008613 6.9e-149 530.8 302 83.1
Gorai.004G183200 Gossypium raimondii HOM05D006814 ORTHO05D008613 9.0e-149 530.4 298 84.2
TAR629G1931 Trochodendron aralioides HOM05D006814 ORTHO05D008613 1.5e-148 529.6 302 83.4
Solyc08g076610.4 Solanum lycopersicum HOM05D006814 ORTHO05D008613 7.7e-148 527.3 302 82.1
Prupe.4G270400 Prunus persica HOM05D006814 ORTHO05D008613 1.7e-147 526.2 263 96.6
Cpa.g.sc87.105 Carica papaya HOM05D006814 ORTHO05D008613 5.0e-147 524.6 303 82.5
Sopen08g025160 Solanum pennellii HOM05D006814 ORTHO05D008613 5.0e-147 524.6 302 81.8
MELO3C008839.2 Cucumis melo HOM05D006814 ORTHO05D008613 1.1e-146 523.5 297 82.2
Cc08_g03190 Coffea canephora HOM05D006814 ORTHO05D008613 1.9e-146 522.7 304 81.6
CAN.G298.54 Capsicum annuum HOM05D006814 ORTHO05D008613 3.2e-146 521.9 303 81.5
Lsat_1_v5_gn_3_19041 Lactuca sativa HOM05D006814 ORTHO05D008613 3.2e-146 521.9 302 81.1
Nn1g02991 Nelumbo nucifera HOM05D006814 ORTHO05D008613 3.2e-146 521.9 302 82.8
CsaV3_4G012030 Cucumis sativus L. HOM05D006814 ORTHO05D008613 7.2e-146 520.8 297 81.5
ClCG04G005520 Citrullus lanatus HOM05D006814 ORTHO05D008613 1.6e-145 519.6 314 78.7
Hund14354 Selenicereus undatus HOM05D006814 ORTHO05D008613 6.1e-145 517.7 299 80.9
vmacro00308 Vaccinium macrocarpon HOM05D006814 ORTHO05D008613 1.0e-144 516.9 322 78.6
Lj8A305G45 Lonicera japonica HOM05D006814 ORTHO05D008613 1.8e-144 516.2 303 81.5
QL12p004459 Quercus lobata HOM05D006814 ORTHO05D008613 2.3e-144 515.8 324 78.4
MSTRG.24841 Avicennia marina HOM05D006814 ORTHO05D008613 3.0e-144 515.4 296 80.7
Aqoxy4G00304 Aquilegia oxysepala HOM05D006814 ORTHO05D008613 3.9e-144 515.0 302 80.5
COL.COLO4_16971 Corchorus olitorius HOM05D006814 ORTHO05D008613 2.5e-143 512.3 278 87.8
TWI60G0232 Tripterygium wilfordii HOM05D006814 ORTHO05D008613 3.3e-143 511.9 299 82.6
DCAR_032083 Daucus carota HOM05D006814 ORTHO05D008613 7.4e-143 510.8 302 80.1
PGR031G2224 Punica granatum HOM05D006814 ORTHO05D008613 7.4e-143 510.8 299 80.3
HanXRQChr17g0538231 Helianthus annuus HOM05D006814 ORTHO05D008613 9.7e-143 510.4 301 80.1
AUR62007326 Chenopodium quinoa HOM05D006814 ORTHO05D008613 2.2e-142 509.2 289 83.4
HanXRQChr17g0538211 Helianthus annuus HOM05D006814 ORTHO05D008613 4.8e-142 508.1 301 79.7
ECA246G4850 Erigeron canadensis HOM05D006814 ORTHO05D008613 4.1e-141 505.0 313 77.0
Sc07g0008590 Simmondsia chinensis HOM05D006814 ORTHO05D008613 2.6e-140 502.3 300 80.7
PSO063G6077 Papaver somniferum HOM05D006814 ORTHO05D008613 3.8e-139 498.4 299 77.3
Migut.A01081 Erythranthe guttata HOM05D006814 ORTHO05D008613 1.9e-138 496.1 291 80.4
Carub.0007s2360 Capsella rubella HOM05D006814 ORTHO05D008613 2.5e-138 495.7 298 77.9
Oeu005300.2 Olea europaea HOM05D006814 ORTHO05D008613 7.2e-138 494.2 350 69.4
Thhalv10025847m.g Eutrema salsugineum HOM05D006814 ORTHO05D008613 1.2e-137 493.4 298 77.5
Aa31LG6G500 Aethionema arabicum HOM05D006814 ORTHO05D008613 2.1e-137 492.7 298 77.5
Ca_26271_v3 Cicer arietinum L. HOM05D006814 ORTHO05D008613 2.7e-137 492.3 296 76.7
AL7G36810 Arabidopsis lyrata HOM05D006814 ORTHO05D008613 3.6e-137 491.9 298 77.5
BraA03t14161Z Brassica rapa HOM05D006814 ORTHO05D008613 6.1e-137 491.1 297 79.1
CARHR224480 Cardamine hirsuta HOM05D006814 ORTHO05D008613 6.1e-137 491.1 299 77.3
BcaNung04035 Brassica carinata HOM05D006814 ORTHO05D008613 1.8e-136 489.6 297 78.8
A03p50690 Brassica napus HOM05D006814 ORTHO05D008613 1.8e-136 489.6 297 78.8
Medtr8g447310 Medicago truncatula HOM05D006814 ORTHO05D008613 1.8e-136 489.6 296 76.4
Lj3g0020867 Lotus japonicus HOM05D006814 ORTHO05D008613 2.3e-136 489.2 292 77.7
SGA_v2.0_scaffold36G14306 Striga asiatica HOM05D006814 ORTHO05D008613 3.9e-136 488.4 337 72.7
BcaC06g33591 Brassica carinata HOM05D006814 ORTHO05D008613 5.1e-136 488.0 297 78.1
BolC7t45420H Brassica oleracea HOM05D006814 ORTHO05D008613 5.1e-136 488.0 297 78.1
Glyma.20G095300 Glycine max HOM05D006814 ORTHO05D008613 6.7e-136 487.6 296 78.4
AUR62018677 Chenopodium quinoa HOM05D006814 ORTHO05D008613 1.5e-135 486.5 296 79.1
arahy.Tifrunner.gnm1.ann1.DD0PLV Arachis hypogaea HOM05D006814 ORTHO05D008613 1.3e-134 483.4 302 73.2
TPR.G8183 Trifolium pratense HOM05D006814 ORTHO05D008613 1.7e-134 483.0 294 75.9
VMungo0251G2608 Vigna mungo HOM05D006814 ORTHO05D008613 3.7e-134 481.9 292 76.7
Sp7g16350 Schrenkiella parvula HOM05D006814 ORTHO05D008613 4.8e-134 481.5 298 76.2
Psat4g131760 Pisum sativum HOM05D006814 ORTHO05D008613 1.8e-133 479.6 296 75.3
arahy.Tifrunner.gnm1.ann1.S7AV19 Arachis hypogaea HOM05D006814 ORTHO05D008613 2.4e-133 479.2 302 72.8
EL10Ac5g12048 Beta vulgaris HOM05D006814 ORTHO05D008613 3.1e-133 478.8 291 79.0
THA.LOC104798334 Tarenaya hassleriana HOM05D006814 ORTHO05D008613 3.1e-133 478.8 298 76.5
C07p49120 Brassica napus HOM05D006814 ORTHO05D008613 7.7e-132 474.2 322 72.0
CDE11G0551 Ceratophyllum demersum HOM05D006814 ORTHO05D008613 1.7e-131 473.0 298 73.8
Aa31LG9G8590 Aethionema arabicum HOM05D006814 ORTHO05D008613 5.5e-130 468.0 298 73.8
ATR0772G225 Amborella trichopoda HOM05D006814 ORTHO05D008613 1.5e-127 459.9 296 74.3
Lalb_Chr05g0228761 Lupinus albus HOM05D006814 ORTHO05D008613 3.3e-127 458.8 293 72.4
Haze_08181 Corylus avellana HOM05D006814 ORTHO05D008613 7.4e-127 457.6 299 75.9
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 3.1e-125 452.2 301 72.8
Zm00001eb269700 Zea mays HOM05D006814 ORTHO05D008613 1.6e-124 449.9 294 71.8
Os06g0132600 Oryza sativa ssp. japonica HOM05D006814 ORTHO05D008613 1.8e-120 436.4 269 76.2
SEGI_31198 Sequoiadendron giganteum HOM05D006814 ORTHO05D008613 5.3e-117 424.9 296 68.6
Sed0016076 Sechium edule HOM05D006814 ORTHO05D008613 1.8e-104 383.3 221 78.7
AagrBONN_evm.TU.Sc2ySwM_228.215 Anthoceros agrestis HOM05D006814 ORTHO05D008613 1.5e-103 380.2 290 62.1
Pp3c10_20230 Physcomitrium patens HOM05D006814 ORTHO05D008613 4.4e-103 378.6 288 61.1
Mapoly0097s0033 Marchantia polymorpha HOM05D006814 ORTHO05D008613 8.6e-99 364.4 291 62.5
Dinv28983 Davidia involucrata HOM05D006814 ORTHO05D008613 1.5e-98 363.6 199 85.4
SMO358G0599 Selaginella moellendorffii HOM05D006814 ORTHO05D008613 2.2e-94 349.7 287 60.3
Eucgr.D02215 Eucalyptus grandis HOM05D006814 ORTHO05D008613 1.0e-91 340.9 198 79.3
Phvul.003G283200 Phaseolus vulgaris HOM05D006814 ORTHO05D008613 8.9e-88 327.8 191 78.0
AT4G17760 Arabidopsis thaliana HOM05D006814 ORTHO05D008613 1.1e-80 304.3 187 77.0
Nitab4.5_0025014g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 1.2e-73 280.8 167 78.4
CBR_g3124 Chara braunii HOM05D006814 ORTHO05D008613 4.7e-73 278.9 265 52.5
SalBow6G3153 Salvia bowleyana HOM05D006814 ORTHO05D008613 9.0e-64 248.1 150 77.3
GSVIVG01003310001 Vitis vinifera HOM05D006814 ORTHO05D008613 4.4e-63 245.7 151 72.8
DCAR_021700 Daucus carota HOM05D006814 ORTHO05D013862 3.6e-57 226.1 150 74.0
Hma1.2p1_0572F.1_g181150 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 2.4e-56 223.4 142 80.3
CAN.G298.53 Capsicum annuum HOM05D006814 ORTHO05D008613 2.1e-44 183.7 114 78.9
CAN.G298.50 Capsicum annuum HOM05D006814 ORTHO05D008613 4.3e-42 176.0 105 81.0
Actinidia25984 Actinidia chinensis HOM05D006814 ORTHO05D008613 1.8e-32 144.1 79 89.9
CAN.G2435.1 Capsicum annuum HOM05D006814 ORTHO05D008613 2.0e-31 140.6 88 78.4
Hma1.2p1_0586F.1_g183890 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 1.9e-29 134.0 118 59.3
Cre03.g162250 Chlamydomonas reinhardtii HOM05D006814 ORTHO05D008613 7.4e-26 122.1 335 26.9
Glyma.10G145666 Glycine max HOM05D006814 ORTHO05D008613 7.4e-26 122.1 73 78.1
Actinidia25985 Actinidia chinensis HOM05D006814 ORTHO05D008613 4.8e-25 119.4 72 80.6
PRCOL_00006064 Prasinoderma coloniale HOM05D006814 ORTHO05D008613 9.1e-24 115.2 325 26.8
MCO03G144 Micromonas commoda HOM05D006814 ORTHO05D008613 4.5e-23 112.8 296 26.0
EL10As1g23070 Beta vulgaris HOM05D006814 ORTHO05D088401 1.8e-11 74.3 41 82.9


User provided reference genes

Program Settings