Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1119400 Malus domestica HOM05D000189 ORTHO05D034871 5.2e-59 230.7 106 100.0
MD05G1020200 Malus domestica HOM05D000189 ORTHO05D000474 8.3e-25 117.1 86 66.3
MD10G1021300 Malus domestica HOM05D000189 ORTHO05D000474 1.4e-24 116.3 81 70.4
Prupe.8G024300 Prunus persica HOM05D000189 ORTHO05D000474 1.2e-20 103.2 86 61.6
RcHm_v2.0_Chr6g0276571 Rosa chinensis HOM05D000189 ORTHO05D000474 6.8e-19 97.4 86 54.7
QL02p024570 Quercus lobata HOM05D000189 ORTHO05D000474 3.4e-18 95.1 85 58.8
FvH4_2g14280 Fragaria vesca HOM05D000189 ORTHO05D000474 4.4e-18 94.7 86 53.5
Potri.005G190000 Populus trichocarpa HOM05D000189 ORTHO05D000474 7.5e-18 94.0 80 57.5
FAN20G0720 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.3e-17 93.2 86 52.3
CiPaw.15G019100 Carya illinoinensis HOM05D000189 ORTHO05D000474 4.9e-17 91.3 83 55.4
Medtr1g099220 Medicago truncatula HOM05D000189 ORTHO05D000474 4.9e-17 91.3 81 54.3
FAN15G2751 Fragaria x ananassa HOM05D000189 ORTHO05D000474 6.4e-17 90.9 86 52.3
Atru.chr13.2214 Acer truncatum HOM05D000189 ORTHO05D000474 8.3e-17 90.5 83 53.0
FAN27G0879 Fragaria x ananassa HOM05D000189 ORTHO05D000474 8.3e-17 90.5 86 51.2
Duzib041G0094 Durio zibethinus HOM05D000189 ORTHO05D000474 1.1e-16 90.1 83 54.2
FAN24G1363 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.9e-16 89.4 86 52.3
Lj5g0008955 Lotus japonicus HOM05D000189 ORTHO05D000474 1.9e-16 89.4 83 55.4
Ca_19927_v3 Cicer arietinum L. HOM05D000189 ORTHO05D000474 4.1e-16 88.2 80 51.2
Haze_17733 Corylus avellana HOM05D000189 ORTHO05D000474 4.1e-16 88.2 87 54.0
Lj2g0008762 Lotus japonicus HOM05D000189 ORTHO05D000474 9.2e-16 87.0 80 51.2
TPR.G10137 Trifolium pratense HOM05D000189 ORTHO05D000474 1.2e-15 86.7 82 52.4
CiPaw.16G014900 Carya illinoinensis HOM05D000189 ORTHO05D000474 1.6e-15 86.3 80 51.2
Phvul.007G078300 Phaseolus vulgaris HOM05D000189 ORTHO05D000474 2.1e-15 85.9 83 51.8
Cfa018341 Carpinus fangiana HOM05D000189 ORTHO05D000474 2.7e-15 85.5 85 54.1
Glyma.20G165400 Glycine max HOM05D000189 ORTHO05D000474 2.7e-15 85.5 81 53.1
Duzib093G1935 Durio zibethinus HOM05D000189 ORTHO05D000474 4.6e-15 84.7 84 50.0
Thecc.08G147600 Theobroma cacao HOM05D000189 ORTHO05D000474 4.6e-15 84.7 83 51.8
Glyma.10G226900 Glycine max HOM05D000189 ORTHO05D000474 6.0e-15 84.3 80 51.2
Psat6g194080 Pisum sativum HOM05D000189 ORTHO05D000474 1.0e-14 83.6 81 49.4
VMungo0720G0229 Vigna mungo HOM05D000189 ORTHO05D000474 1.7e-14 82.8 84 52.4
Glyma.02G084100 Glycine max HOM05D000189 ORTHO05D000474 2.3e-14 82.4 80 48.8
TWI74G1176 Tripterygium wilfordii HOM05D000189 ORTHO05D000474 2.3e-14 82.4 80 50.0
CANSAT25G3218 Cannabis sativa HOM05D000189 ORTHO05D000474 3.0e-14 82.0 80 52.5
DCAR_014423 Daucus carota HOM05D000189 ORTHO05D000474 3.0e-14 82.0 83 51.8
Glyma.16G170500 Glycine max HOM05D000189 ORTHO05D000474 3.0e-14 82.0 83 48.2
Dinv41102 Davidia involucrata HOM05D000189 ORTHO05D000474 3.9e-14 81.6 80 52.5
Cpa.g.sc49.39 Carica papaya HOM05D000189 ORTHO05D000474 5.1e-14 81.3 83 49.4
COL.COLO4_02801 Corchorus olitorius HOM05D000189 ORTHO05D034871 5.1e-14 81.3 83 51.8
MSTRG.25311 Avicennia marina HOM05D000189 ORTHO05D000474 1.9e-13 79.3 84 47.6
Peaxi162Scf00263g01019 Petunia axillaris HOM05D000189 ORTHO05D000474 2.5e-13 79.0 80 48.8
Gorai.005G080500 Gossypium raimondii HOM05D000189 ORTHO05D000474 3.3e-13 78.6 83 49.4
Sabra05G0145100 Salix brachista HOM05D000189 ORTHO05D000474 3.3e-13 78.6 81 51.9
TPR.G36702 Trifolium pratense HOM05D000189 ORTHO05D000474 3.3e-13 78.6 81 46.9
Phvul.004G099000 Phaseolus vulgaris HOM05D000189 ORTHO05D000474 4.3e-13 78.2 80 47.5
Lalb_Chr03g0035171 Lupinus albus HOM05D000189 ORTHO05D000474 5.6e-13 77.8 83 48.2
Manes.02G177100 Manihot esculenta HOM05D000189 ORTHO05D000474 5.6e-13 77.8 83 51.8
VMungo0464G1565 Vigna mungo HOM05D000189 ORTHO05D000474 5.6e-13 77.8 83 48.2
Gohir.A02G065500 Gossypium hirsutum HOM05D000189 ORTHO05D000474 7.3e-13 77.4 83 48.2
Gohir.D02G071300 Gossypium hirsutum HOM05D000189 ORTHO05D000474 9.5e-13 77.0 83 48.2
Potri.002G070300 Populus trichocarpa HOM05D000189 ORTHO05D000474 9.5e-13 77.0 82 52.4
arahy.Tifrunner.gnm1.ann1.0KPM2I Arachis hypogaea HOM05D000189 ORTHO05D000474 1.2e-12 76.6 83 48.2
arahy.Tifrunner.gnm1.ann1.AAAS1H Arachis hypogaea HOM05D000189 ORTHO05D000474 1.2e-12 76.6 83 48.2
Lj4C694G10 Lonicera japonica HOM05D000189 ORTHO05D000474 1.2e-12 76.6 82 47.6
Duzib116G0852 Durio zibethinus HOM05D000189 ORTHO05D000474 2.8e-12 75.5 68 54.4
GSVIVG01001675001 Vitis vinifera HOM05D000189 ORTHO05D000474 2.8e-12 75.5 86 50.0
Ciclev10000092m.g Citrus clementina HOM05D000189 ORTHO05D000474 3.6e-12 75.1 80 46.2
Nitab4.5_0008245g0010 Nicotiana tabacum HOM05D000189 ORTHO05D000474 3.6e-12 75.1 80 45.0
Hund26713 Selenicereus undatus HOM05D000189 ORTHO05D000474 3.6e-12 75.1 80 48.8
Sopen12g005370 Solanum pennellii HOM05D000189 ORTHO05D034871 3.6e-12 75.1 81 46.9
CAN.G715.2 Capsicum annuum HOM05D000189 ORTHO05D000474 6.2e-12 74.3 80 46.2
Ah.05g167730 Amaranthus hybridus HOM05D000189 ORTHO05D000474 8.1e-12 73.9 85 49.4
MSTRG.1080 Avicennia marina HOM05D000189 ORTHO05D000474 8.1e-12 73.9 80 46.2
MBI17_g39657_MAGBIO Magnolia biondii HOM05D000189 ORTHO05D000474 1.1e-11 73.6 67 58.2
Nn1g06151 Nelumbo nucifera HOM05D000189 ORTHO05D000474 1.1e-11 73.6 79 48.1
Sabra02G0054900 Salix brachista HOM05D000189 ORTHO05D000474 1.1e-11 73.6 82 48.8
Solyc04g071040.4 Solanum lycopersicum HOM05D000189 ORTHO05D000474 1.4e-11 73.2 80 46.2
Sopen04g026980 Solanum pennellii HOM05D000189 ORTHO05D000474 1.4e-11 73.2 80 46.2
PGSC0003DMG400000792 Solanum tuberosum HOM05D000189 ORTHO05D000474 1.4e-11 73.2 80 46.2
TAR625G1001 Trochodendron aralioides HOM05D000189 ORTHO05D000474 1.4e-11 73.2 79 48.1
Gorai.009G253000 Gossypium raimondii HOM05D000189 ORTHO05D000474 1.8e-11 72.8 76 47.4
vmacro21126 Vaccinium macrocarpon HOM05D000189 ORTHO05D000474 1.8e-11 72.8 81 50.6
Cc10_g14090 Coffea canephora HOM05D000189 ORTHO05D000474 2.3e-11 72.4 80 48.8
Medtr6g034795 Medicago truncatula HOM05D000189 ORTHO05D000474 2.3e-11 72.4 102 40.2
CsaV3_6G029680 Cucumis sativus L. HOM05D000189 ORTHO05D000474 3.1e-11 72.0 80 51.2
EL10Ac1g01509 Beta vulgaris HOM05D000189 ORTHO05D000474 4.0e-11 71.6 82 48.8
TAR381G0158 Trochodendron aralioides HOM05D000189 ORTHO05D000474 4.0e-11 71.6 63 54.0
Gohir.A05G242300 Gossypium hirsutum HOM05D000189 ORTHO05D000474 5.2e-11 71.2 68 52.9
Nitab4.5_0003778g0020 Nicotiana tabacum HOM05D000189 ORTHO05D000474 5.2e-11 71.2 80 42.5
CSS0037868 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D000474 6.8e-11 70.9 81 50.6
AUR62026740 Chenopodium quinoa HOM05D000189 ORTHO05D000474 6.8e-11 70.9 82 51.2
Nn5g28683 Nelumbo nucifera HOM05D000189 ORTHO05D000474 6.8e-11 70.9 79 45.6
MSTRG.24213 Avicennia marina HOM05D000189 ORTHO05D000474 8.9e-11 70.5 80 43.8
AUR62013542 Chenopodium quinoa HOM05D000189 ORTHO05D000474 1.2e-10 70.1 82 51.2
MELO3C008391.2 Cucumis melo HOM05D000189 ORTHO05D000474 1.2e-10 70.1 80 50.0
Ca_19332_v3 Cicer arietinum L. HOM05D000189 ORTHO05D000474 2.6e-10 68.9 83 45.8
Lj7C368T11 Lonicera japonica HOM05D000189 ORTHO05D000474 2.6e-10 68.9 77 48.1
Oeu009860.1 Olea europaea HOM05D000189 ORTHO05D000474 2.6e-10 68.9 70 48.6
Gohir.D05G243700 Gossypium hirsutum HOM05D000189 ORTHO05D000474 3.4e-10 68.6 68 50.0
Sed0025710 Sechium edule HOM05D000189 ORTHO05D000474 3.4e-10 68.6 51 60.8
THA.LOC104809200 Tarenaya hassleriana HOM05D000189 ORTHO05D000474 3.4e-10 68.6 75 45.3
TWI53G1240 Tripterygium wilfordii HOM05D000189 ORTHO05D000474 3.4e-10 68.6 83 45.8
Eucgr.F02719 Eucalyptus grandis HOM05D000189 ORTHO05D000474 4.4e-10 68.2 80 46.2
Sed0009439 Sechium edule HOM05D000189 ORTHO05D000474 4.4e-10 68.2 80 50.0
Rhsim06G0090700 Rhododendron simsii HOM05D000189 ORTHO05D000474 7.6e-10 67.4 83 49.4
Aqoxy5G02144 Aquilegia oxysepala HOM05D000189 ORTHO05D000474 9.9e-10 67.0 77 44.2
CsaV3_7G024790 Cucumis sativus L. HOM05D000189 ORTHO05D000474 1.7e-09 66.2 71 45.1
Manes.18G089900 Manihot esculenta HOM05D000189 ORTHO05D000474 1.7e-09 66.2 79 48.1
Oeu009861.2 Olea europaea HOM05D000189 ORTHO05D000474 1.7e-09 66.2 67 49.3
Psat1g099400 Pisum sativum HOM05D000189 ORTHO05D000474 1.7e-09 66.2 84 41.7
ClCG08G006620 Citrullus lanatus HOM05D000189 ORTHO05D000474 2.2e-09 65.9 80 50.0
MELO3C024098.2 Cucumis melo HOM05D000189 ORTHO05D000474 3.8e-09 65.1 51 56.9
PSO675G8101 Papaver somniferum HOM05D000189 ORTHO05D000474 4.9e-09 64.7 69 52.2
ClCG09G009900 Citrullus lanatus HOM05D000189 ORTHO05D000474 6.4e-09 64.3 71 43.7
CsaV3_6G030800 Cucumis sativus L. HOM05D000189 ORTHO05D000474 6.4e-09 64.3 76 48.7
Lalb_Chr02g0141371 Lupinus albus HOM05D000189 ORTHO05D000474 6.4e-09 64.3 84 42.9
Actinidia10666 Actinidia chinensis HOM05D000189 ORTHO05D000474 8.4e-09 63.9 66 53.0
SGA_v2.0_scaffold48G17991 Striga asiatica HOM05D000189 ORTHO05D000474 1.4e-08 63.2 67 47.8
Oeu046023.1 Olea europaea HOM05D000189 ORTHO05D000474 2.4e-08 62.4 84 45.2
Sed0027237 Sechium edule HOM05D000189 ORTHO05D000474 2.4e-08 62.4 79 48.1
Actinidia15147 Actinidia chinensis HOM05D000189 ORTHO05D000474 3.2e-08 62.0 83 47.0
Lalb_Chr06g0161511 Lupinus albus HOM05D000189 ORTHO05D000474 3.2e-08 62.0 84 40.5
Migut.C00991 Erythranthe guttata HOM05D000189 ORTHO05D000474 7.1e-08 60.8 81 39.5
Aa31LG4G6980 Aethionema arabicum HOM05D000189 ORTHO05D000474 9.2e-08 60.5 68 48.5
THA.LOC104806852 Tarenaya hassleriana HOM05D000189 ORTHO05D000474 9.2e-08 60.5 70 44.3
HanXRQChr05g0161691 Helianthus annuus HOM05D000189 ORTHO05D000474 1.6e-07 59.7 58 53.4
PSO541G5644 Papaver somniferum HOM05D000189 ORTHO05D000474 1.6e-07 59.7 69 49.3
Hund17418 Selenicereus undatus HOM05D000189 ORTHO05D000474 2.1e-07 59.3 79 41.8
Aa31LG9G12280 Aethionema arabicum HOM05D000189 ORTHO05D000474 3.5e-07 58.5 52 51.9
HPP92_000063 Vanilla planifolia HOM05D000189 ORTHO05D000474 3.5e-07 58.5 53 56.6
CSS0047273 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D000474 4.6e-07 58.2 85 48.2
Os04g0686200 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D000474 4.6e-07 58.2 64 46.9
Zm00001eb075990 Zea mays HOM05D000189 ORTHO05D000474 4.6e-07 58.2 80 40.0
CDE06G0887 Ceratophyllum demersum HOM05D000189 ORTHO05D000474 7.8e-07 57.4 52 55.8
Lalb_Chr21g0305391 Lupinus albus HOM05D000189 ORTHO05D000474 7.8e-07 57.4 84 39.3
PGR042G2487 Punica granatum HOM05D000189 ORTHO05D000474 1.3e-06 56.6 55 54.5
BcaB03g14808 Brassica carinata HOM05D000189 ORTHO05D000474 1.7e-06 56.2 52 50.0
BcaC08g46492 Brassica carinata HOM05D000189 ORTHO05D000474 1.7e-06 56.2 52 50.0
A07p36880 Brassica napus HOM05D000189 ORTHO05D000474 1.7e-06 56.2 52 50.0
C06p44360 Brassica napus HOM05D000189 ORTHO05D000474 1.7e-06 56.2 52 50.0
BolC6t39505H Brassica oleracea HOM05D000189 ORTHO05D000474 1.7e-06 56.2 52 50.0
BraA07t31252Z Brassica rapa HOM05D000189 ORTHO05D000474 1.7e-06 56.2 52 50.0
HanXRQChr04g0108991 Helianthus annuus HOM05D000189 ORTHO05D000474 2.3e-06 55.8 65 47.7
AL8G19730 Arabidopsis lyrata HOM05D000189 ORTHO05D000474 3.0e-06 55.5 85 40.0
Lsat_1_v5_gn_6_98720 Lactuca sativa HOM05D000189 ORTHO05D000474 3.0e-06 55.5 46 60.9
SGA_v2.0_scaffold19G08679 Striga asiatica HOM05D000189 ORTHO05D000474 3.0e-06 55.5 47 53.2
Carub.0008s0721 Capsella rubella HOM05D000189 ORTHO05D000474 3.9e-06 55.1 53 52.8
Zm00001eb362420 Zea mays HOM05D000189 ORTHO05D000474 3.9e-06 55.1 85 32.9
ECA246G1040 Erigeron canadensis HOM05D000189 ORTHO05D000474 5.1e-06 54.7 58 50.0
Sp5g32070 Schrenkiella parvula HOM05D000189 ORTHO05D000474 8.6e-06 53.9 51 52.9


User provided reference genes

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