Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 0.0e+00 3204.8 1789 100.0
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 0.0e+00 2178.7 1726 70.9
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 0.0e+00 1755.3 1718 60.0
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 0.0e+00 1749.9 1716 60.4
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 0.0e+00 1636.7 1719 57.5
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 0.0e+00 1548.9 1859 52.7
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 0.0e+00 1536.5 1773 54.5
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 0.0e+00 1372.1 1741 50.6
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 0.0e+00 1359.4 1720 50.0
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 0.0e+00 1352.4 1737 49.8
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 1277.3 1745 48.6
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 1277.3 1745 48.6
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 0.0e+00 1273.8 1713 47.6
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 0.0e+00 1225.7 1735 47.3
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 0.0e+00 1199.1 1792 46.2
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 0.0e+00 1197.2 1723 46.8
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 0.0e+00 1188.3 1747 45.7
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 0.0e+00 1165.2 1704 44.9
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 0.0e+00 1141.3 1840 43.5
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 0.0e+00 1140.9 1750 45.0
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 0.0e+00 1126.7 1781 44.2
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 0.0e+00 1126.7 1755 44.7
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 0.0e+00 1114.0 1725 42.8
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 0.0e+00 1093.2 1759 44.3
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 0.0e+00 1078.5 1765 43.9
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 1.6e-309 1067.0 1844 40.9
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 8.7e-308 1061.2 1772 42.3
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 1.2e-304 1050.8 1644 42.7
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 9.3e-294 1014.6 1838 40.6
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 4.5e-280 969.1 1701 42.0
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 1.7e-279 967.2 1852 39.5
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 5.7e-275 952.2 1268 48.4
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 3.4e-272 943.0 1741 40.4
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 7.9e-269 931.8 1732 39.4
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 1.1e-265 921.4 1764 39.6
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 6.9e-265 918.7 1737 38.9
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 7.7e-264 915.2 2135 35.6
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 6.5e-263 912.1 1867 38.9
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 9.4e-262 908.3 1814 38.5
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 1.4e-260 904.4 1741 39.3
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 1.1e-259 901.4 1721 39.6
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 5.7e-259 899.0 1745 39.3
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 4.8e-258 896.0 1691 39.1
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 1.5e-254 884.4 1816 37.1
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 4.7e-253 879.4 1796 39.3
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 1.1e-251 874.8 1805 38.0
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 4.4e-251 872.8 1781 38.7
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 1.3e-250 871.3 1762 38.1
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 2.2e-250 870.5 1804 37.9
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 2.8e-250 870.2 1747 37.8
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 3.1e-249 866.7 1731 38.2
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 5.3e-249 865.9 1819 36.9
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 3.5e-248 863.2 1776 38.6
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 1.9e-246 857.4 1763 37.5
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 3.2e-246 856.7 1816 37.4
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 7.2e-246 855.5 1746 38.2
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 6.1e-245 852.4 1755 38.7
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 2.6e-243 847.0 1774 37.2
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 2.7e-240 837.0 1698 36.8
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 2.2e-239 833.9 1716 38.1
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 8.5e-239 832.0 853 58.4
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 2.7e-237 827.0 1720 37.4
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 1.1e-233 815.1 1710 37.3
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 2.4e-233 813.9 1719 38.0
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.5e-232 810.1 787 59.3
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 1.5e-230 804.7 1722 36.8
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 1.2e-229 801.6 1775 36.8
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 1.0e-228 798.5 1697 37.8
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 3.2e-225 786.9 1583 38.7
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 1.0e-220 771.9 1755 34.6
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 1.9e-217 761.1 1149 43.9
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 2.5e-214 750.7 1730 36.1
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 3.1e-212 743.8 1706 36.1
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.2e-211 741.9 1783 33.7
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 2.4e-209 734.2 1681 35.5
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 2.7e-208 730.7 1785 35.1
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 1.1e-204 718.8 1728 35.4
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 2.1e-200 704.5 1759 34.2
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.9e-193 681.4 1679 34.6
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 9.9e-187 659.1 1493 37.0
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.3e-181 642.1 1692 32.9
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 2.8e-181 641.0 946 43.6
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 4.9e-170 603.6 1696 32.3
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 2.5e-169 601.3 998 44.9
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 8.5e-162 576.2 1817 32.1
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 6.3e-157 560.1 1481 34.2
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.2e-147 529.3 1454 33.8
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.2e-147 529.3 1454 33.8
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 1.7e-146 525.4 871 41.0
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 7.4e-142 510.0 955 41.0
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 2.6e-126 458.4 822 38.2
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 1.2e-112 412.9 916 35.0
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 9.5e-105 386.7 437 45.3
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 2.7e-99 368.6 938 36.5
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 2.3e-95 355.5 1047 30.3
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 2.0e-94 352.4 929 36.2
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 2.9e-85 322.0 1101 27.7
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 7.1e-84 317.4 858 36.0
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.9e-81 309.3 677 34.4
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.2e-78 300.1 667 38.4
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 3.4e-78 298.5 628 34.6
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 5.4e-76 291.2 1073 27.0
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 7.8e-75 287.3 671 39.3
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 2.3e-74 285.8 1046 31.5
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 5.1e-74 284.6 1730 24.8
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 6.9e-71 274.2 469 37.7
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 7.6e-70 270.8 793 31.4
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.2e-67 263.5 457 40.3
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 9.9e-62 243.8 833 32.4
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 2.2e-61 242.7 473 37.8
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 1.6e-56 226.5 674 35.2
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 9.0e-55 220.7 238 49.6
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.2e-54 220.3 235 55.7
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 3.4e-54 218.8 239 47.3
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 7.9e-51 207.6 194 57.2
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 1.8e-50 206.5 233 43.3
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 6.3e-48 198.0 232 53.0
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 4.5e-46 191.8 297 47.1
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 2.9e-45 189.1 184 51.6
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 1.2e-43 183.7 146 59.6
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 2.1e-43 183.0 654 31.5
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 3.6e-43 182.2 192 52.6
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 1.4e-39 170.2 991 27.9
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 9.4e-36 157.5 136 57.4
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 5.7e-33 148.3 217 43.3
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 2.6e-30 139.4 137 53.3
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 1.0e-29 137.5 188 45.2
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.1e-28 134.0 661 28.6
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 6.1e-27 128.3 140 45.0
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 4.8e-24 118.6 925 25.8
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 8.2e-24 117.9 403 29.0
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 8.2e-24 117.9 93 62.4
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 4.5e-22 112.1 80 66.2
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 5.9e-22 111.7 112 52.7
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.8e-21 109.0 112 51.8
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 4.7e-19 102.1 137 41.6
Cpa.g.sc119.17 Carica papaya HOM05D004493 ORTHO05D005117 6.1e-19 101.7 296 33.8
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.0e-18 100.9 94 56.4
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 2.6e-17 96.3 254 30.3
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 2.2e-16 93.2 118 56.8
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.7e-16 92.4 90 55.6
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 1.8e-15 90.1 68 60.3
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 5.3e-15 88.6 306 33.3
FAN10G2778 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.6e-14 87.0 213 29.1
RcHm_v2.0_Chr7g0214951 Rosa chinensis HOM05D004493 ORTHO05D005117 1.7e-13 83.6 92 55.4
AagrBONN_evm.TU.Sc2ySwM_228.300 Anthoceros agrestis HOM05D004493 ORTHO05D005117 1.1e-12 80.9 230 28.7
Potri.001G001250 Populus trichocarpa HOM05D004493 ORTHO05D005117 1.5e-12 80.5 312 30.8
FAN07G1051 Fragaria x ananassa HOM05D004493 ORTHO05D005117 5.5e-12 78.6 83 55.4
Cre07.g313500 Chlamydomonas reinhardtii HOM05D051285 ORTHO05D005117 1.2e-11 77.4 433 23.6
FAN21G3487 Fragaria x ananassa HOM05D004493 ORTHO05D005117 8.0e-11 74.7 83 54.2
QL04p013873 Quercus lobata HOM05D004493 ORTHO05D005117 6.8e-10 71.6 67 53.7
CSS0009629 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 1.2e-09 70.9 359 28.1
Os07g0685400 Oryza sativa ssp. japonica HOM05D004493 ORTHO05D005117 4.8e-08 65.5 295 31.2
Zm00001eb411990 Zea mays HOM05D004493 ORTHO05D005117 1.8e-07 63.5 102 35.3
CDE02G0298 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 5.9e-06 58.5 57 45.6


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