Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 1.3e-246 855.9 408 100.0
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 2.7e-217 758.4 399 89.2
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 1.2e-207 726.5 399 85.0
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 1.3e-206 723.0 404 83.9
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 1.7e-206 722.6 399 84.7
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 1.7e-203 712.6 398 82.4
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 3.3e-202 708.4 398 83.2
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 2.1e-201 705.7 398 82.2
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 4.7e-201 704.5 399 81.5
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 3.4e-199 698.4 398 81.7
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 4.9e-198 694.5 396 81.6
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 3.1e-197 691.8 396 80.6
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 3.1e-197 691.8 396 81.3
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 5.4e-197 691.0 395 81.5
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 1.2e-196 689.9 396 81.6
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 2.7e-196 688.7 396 81.3
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 7.8e-196 687.2 407 78.6
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 1.7e-195 686.0 345 96.2
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 2.3e-195 685.6 396 80.3
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 8.6e-195 683.7 396 79.5
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 1.5e-194 682.9 398 77.4
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 2.5e-194 682.2 396 79.8
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 5.6e-194 681.0 396 79.8
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 1.2e-193 679.9 398 77.4
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 2.8e-193 678.7 407 79.1
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 3.6e-193 678.3 396 78.8
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 3.6e-193 678.3 399 77.9
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 6.1e-193 677.6 398 79.4
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 6.1e-193 677.6 398 77.4
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 2.3e-192 675.6 398 76.9
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 1.2e-191 673.3 397 78.3
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 1.2e-191 673.3 398 77.6
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 1.2e-191 673.3 397 78.8
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 1.5e-191 672.9 396 77.0
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 2.0e-191 672.5 398 78.1
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 5.8e-191 671.0 396 78.5
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 2.9e-190 668.7 396 77.5
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 1.1e-189 666.8 397 76.6
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 3.2e-189 665.2 399 75.9
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 4.1e-189 664.8 392 77.8
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 2.0e-188 662.5 398 75.6
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 4.6e-188 661.4 396 76.3
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 1.3e-187 659.8 397 78.8
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 3.0e-187 658.7 426 73.7
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 3.9e-187 658.3 393 76.8
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 8.6e-187 657.1 393 76.3
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 3.3e-186 655.2 396 76.3
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 5.6e-186 654.4 396 76.5
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 5.6e-186 654.4 397 75.8
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 1.6e-185 652.9 393 75.8
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 2.1e-185 652.5 396 76.3
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 2.8e-185 652.1 397 75.8
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 2.3e-184 649.0 393 75.6
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 5.2e-184 647.9 398 73.4
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 5.8e-183 644.4 398 73.1
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 5.8e-183 644.4 399 74.9
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 7.5e-183 644.0 397 74.8
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 8.3e-182 640.6 391 75.4
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 1.4e-181 639.8 410 74.1
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 1.9e-181 639.4 402 74.1
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 1.0e-179 633.6 397 73.8
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 5.1e-179 631.3 398 73.1
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 6.6e-179 630.9 396 74.0
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 9.5e-178 627.1 397 73.3
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 3.1e-176 622.1 395 72.7
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 3.1e-176 622.1 392 74.2
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 1.5e-175 619.8 400 70.8
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 2.0e-175 619.4 399 72.7
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 9.9e-175 617.1 399 73.9
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 3.7e-174 615.1 396 72.2
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 4.9e-174 614.8 393 71.8
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 1.4e-173 613.2 400 72.5
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 1.4e-173 613.2 396 71.0
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 3.2e-173 612.1 400 72.5
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 3.2e-173 612.1 399 72.4
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 5.4e-173 611.3 399 71.4
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 3.5e-172 608.6 398 71.6
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 6.0e-172 607.8 400 71.0
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 1.7e-171 606.3 401 71.1
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 1.7e-171 606.3 401 71.1
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 1.7e-171 606.3 401 71.1
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.3e-171 605.9 396 70.5
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 2.3e-171 605.9 397 71.0
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 3.0e-171 605.5 396 70.5
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 3.9e-171 605.1 393 72.5
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 6.6e-171 604.4 400 68.2
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 6.6e-171 604.4 396 70.7
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 5.6e-170 601.3 401 70.3
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 1.2e-169 600.1 409 71.4
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 4.7e-169 598.2 392 69.9
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 4.9e-166 588.2 349 77.7
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 9.2e-165 583.9 354 76.8
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 6.0e-164 581.3 382 68.1
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.6e-161 573.2 410 63.9
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 2.8e-161 572.4 410 64.1
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 2.8e-161 572.4 397 67.3
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 4.7e-161 571.6 399 68.7
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 6.4e-158 561.2 399 69.4
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 2.4e-157 559.3 306 85.0
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 5.4e-157 558.1 396 65.9
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 6.0e-156 554.7 356 72.8
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 1.3e-150 537.0 309 79.6
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 2.4e-149 532.7 355 67.0
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 7.1e-149 531.2 394 65.2
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 6.2e-145 518.1 307 77.9
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 1.6e-124 450.3 395 54.2
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.8e-123 446.8 403 53.1
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 7.4e-122 441.4 258 81.0
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 2.8e-121 439.5 253 81.8
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 3.1e-120 436.0 363 60.1
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 4.1e-120 435.6 409 51.1
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 3.4e-119 432.6 405 53.1
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 9.4e-109 397.9 435 46.9
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 1.0e-99 367.9 217 78.3
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.3e-86 324.3 243 60.9
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 1.2e-74 284.6 165 81.8
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 3.4e-74 283.1 185 66.5
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 1.1e-72 278.1 165 78.2
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 2.2e-65 253.8 160 68.8
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 1.1e-64 251.5 206 56.3
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.7e-62 244.2 158 69.0
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 8.9e-51 205.3 129 69.0
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 8.1e-44 182.2 129 64.3
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 6.0e-31 139.4 455 27.5
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.5e-29 134.8 478 26.4
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 8.1e-28 129.0 86 70.9
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 4.3e-21 106.7 347 28.0
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 7.4e-21 105.9 423 27.0
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 1.1e-13 82.0 54 75.9
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 7.4e-13 79.3 80 58.8
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 9.0e-11 72.4 91 42.9
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 2.6e-10 70.9 55 54.5
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 2.5e-08 64.3 181 29.8
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 9.4e-08 62.4 61 52.5
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 9.4e-08 62.4 61 52.5


User provided reference genes

Program Settings