Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1295500 Malus domestica HOM05D006296 ORTHO05D007777 1.4e-80 302.8 136 100.0
MD05G1314200 Malus domestica HOM05D006296 ORTHO05D007777 1.6e-73 279.3 136 91.2
RcHm_v2.0_Chr5g0008131 Rosa chinensis HOM05D006296 ORTHO05D007777 2.0e-71 272.3 136 88.2
FvH4_3g09420 Fragaria vesca HOM05D006296 ORTHO05D007777 4.4e-71 271.2 136 88.2
FAN21G3093 Fragaria x ananassa HOM05D006296 ORTHO05D007777 5.8e-71 270.8 136 86.8
FAN11G0154 Fragaria x ananassa HOM05D006296 ORTHO05D007777 2.1e-68 262.3 144 81.9
FAN08G1739 Fragaria x ananassa HOM05D006296 ORTHO05D007777 1.3e-67 259.6 133 85.0
FAN18G2724 Fragaria x ananassa HOM05D006296 ORTHO05D007777 1.8e-64 249.2 149 75.8
Prupe.4G044900 Prunus persica HOM05D006296 ORTHO05D007777 1.3e-62 243.0 140 80.7
QL05p039836 Quercus lobata HOM05D006296 ORTHO05D007777 1.5e-58 229.6 136 76.5
CsaV3_6G050070 Cucumis sativus L. HOM05D006296 ORTHO05D007777 3.1e-56 221.9 139 73.4
Lj6g0008813 Lotus japonicus HOM05D006296 ORTHO05D007777 5.2e-56 221.1 136 71.3
Duzib160G0870 Durio zibethinus HOM05D006296 ORTHO05D007777 6.9e-56 220.7 139 73.4
Manes.16G026200 Manihot esculenta HOM05D006296 ORTHO05D007777 6.9e-56 220.7 143 70.6
Dinv07546 Davidia involucrata HOM05D006296 ORTHO05D007777 9.0e-56 220.3 141 71.6
MELO3C007289.2 Cucumis melo HOM05D006296 ORTHO05D007777 1.2e-55 219.9 139 72.7
Duzib235G1545 Durio zibethinus HOM05D006296 ORTHO05D007777 1.2e-55 219.9 139 73.4
Nitab4.5_0013250g0030 Nicotiana tabacum HOM05D006296 ORTHO05D007777 2.2e-54 215.7 142 67.6
Thecc.06G189800 Theobroma cacao HOM05D006296 ORTHO05D007777 2.9e-54 215.3 139 71.9
Cfa000430 Carpinus fangiana HOM05D006296 ORTHO05D007777 6.4e-54 214.2 136 72.1
TPR.G12044 Trifolium pratense HOM05D006296 ORTHO05D007777 1.4e-53 213.0 122 72.1
Hma1.2p1_0126F.1_g059310 Hydrangea macrophylla HOM05D006296 ORTHO05D007777 1.9e-53 212.6 144 68.1
Nitab4.5_0003942g0060 Nicotiana tabacum HOM05D006296 ORTHO05D007777 1.9e-53 212.6 142 67.6
Cc02_g13190 Coffea canephora HOM05D006296 ORTHO05D007777 3.2e-53 211.8 143 66.4
HanXRQChr01g0003901 Helianthus annuus HOM05D006296 ORTHO05D007777 9.3e-53 210.3 136 68.4
Psat7g112640 Pisum sativum HOM05D006296 ORTHO05D007777 9.3e-53 210.3 124 72.6
Glyma.13G180700 Glycine max HOM05D006296 ORTHO05D007777 1.2e-52 209.9 110 80.0
Nn1g04048 Nelumbo nucifera HOM05D006296 ORTHO05D007777 1.2e-52 209.9 137 70.1
Phvul.006G187000 Phaseolus vulgaris HOM05D006296 ORTHO05D007777 1.2e-52 209.9 136 68.4
Hund21232 Selenicereus undatus HOM05D006296 ORTHO05D007777 2.1e-52 209.1 138 66.7
Medtr4g088930 Medicago truncatula HOM05D006296 ORTHO05D007777 2.7e-52 208.8 112 77.7
CiPaw.10G047400 Carya illinoinensis HOM05D006296 ORTHO05D007777 1.3e-51 206.5 136 68.4
TWI38G1090 Tripterygium wilfordii HOM05D006296 ORTHO05D007777 1.3e-51 206.5 144 66.7
ECA247G1807 Erigeron canadensis HOM05D006296 ORTHO05D007777 2.3e-51 205.7 136 66.9
THA.LOC104812881 Tarenaya hassleriana HOM05D006296 ORTHO05D007777 5.1e-51 204.5 140 67.1
Gohir.D06G131300 Gossypium hirsutum HOM05D006296 ORTHO05D007777 1.5e-50 203.0 139 67.6
Gorai.010G153200 Gossypium raimondii HOM05D006296 ORTHO05D007777 1.5e-50 203.0 139 67.6
Gohir.A06G126500 Gossypium hirsutum HOM05D006296 ORTHO05D007777 2.5e-50 202.2 139 66.9
VMungo0251G3500 Vigna mungo HOM05D006296 ORTHO05D007777 2.5e-50 202.2 138 66.7
arahy.Tifrunner.gnm1.ann1.6I4RI9 Arachis hypogaea HOM05D006296 ORTHO05D007777 3.3e-50 201.8 136 66.2
Lalb_Chr16g0383701 Lupinus albus HOM05D006296 ORTHO05D007777 4.3e-50 201.4 136 66.2
EL10Ac8g20365 Beta vulgaris HOM05D006296 ORTHO05D007777 5.6e-50 201.1 136 64.0
Glyma.07G195600 Glycine max HOM05D006296 ORTHO05D007777 5.6e-50 201.1 110 76.4
CiPaw.09G058300 Carya illinoinensis HOM05D006296 ORTHO05D007777 7.3e-50 200.7 136 66.2
Sc05g0007770 Simmondsia chinensis HOM05D006296 ORTHO05D007777 1.6e-49 199.5 129 65.9
Solyc10g009040.4 Solanum lycopersicum HOM05D006296 ORTHO05D007777 2.1e-49 199.1 142 64.1
Sopen10g004820 Solanum pennellii HOM05D006296 ORTHO05D007777 2.1e-49 199.1 142 64.1
SGA_v2.0_scaffold49G18290 Striga asiatica HOM05D006296 ORTHO05D007777 2.1e-49 199.1 117 74.4
CSS0006104 Camellia sinensis var. sinensis HOM05D006296 ORTHO05D007777 2.8e-49 198.7 110 74.5
SEGI_22799 Sequoiadendron giganteum HOM05D006296 ORTHO05D007777 2.8e-49 198.7 136 63.2
PSO675G2929 Papaver somniferum HOM05D006296 ORTHO05D007777 3.6e-49 198.4 138 65.9
Potri.004G041700 Populus trichocarpa HOM05D006296 ORTHO05D007777 6.2e-49 197.6 115 71.3
Aqoxy1G02520 Aquilegia oxysepala HOM05D006296 ORTHO05D007777 1.1e-48 196.8 139 63.3
Ca_18536_v3 Cicer arietinum L. HOM05D006296 ORTHO05D007777 3.1e-48 195.3 105 75.2
Eucgr.D00634 Eucalyptus grandis HOM05D006296 ORTHO05D007777 3.1e-48 195.3 137 65.7
Lsat_1_v5_gn_1_126121 Lactuca sativa HOM05D006296 ORTHO05D007777 1.5e-47 193.0 137 65.0
CANSAT35G0041 Cannabis sativa HOM05D006296 ORTHO05D007777 2.6e-47 192.2 136 65.4
Atru.chr10.1908 Acer truncatum HOM05D006296 ORTHO05D007777 5.8e-47 191.0 140 63.6
BcaC09g51212 Brassica carinata HOM05D006296 ORTHO05D007777 1.7e-46 189.5 143 60.1
A01p13040 Brassica napus HOM05D006296 ORTHO05D007777 1.7e-46 189.5 143 60.1
C01p15710 Brassica napus HOM05D006296 ORTHO05D007777 1.7e-46 189.5 143 60.1
BolC1t01524H Brassica oleracea HOM05D006296 ORTHO05D007777 1.7e-46 189.5 143 60.1
BraA01t01246Z Brassica rapa HOM05D006296 ORTHO05D007777 1.7e-46 189.5 143 60.1
HPP92_014805 Vanilla planifolia HOM05D006296 ORTHO05D007777 2.9e-46 188.7 142 59.9
MSTRG.15892 Avicennia marina HOM05D006296 ORTHO05D007777 4.9e-46 188.0 122 66.4
SalBow7G3743 Salvia bowleyana HOM05D006296 ORTHO05D007777 1.1e-45 186.8 174 54.6
Migut.M01153 Erythranthe guttata HOM05D006296 ORTHO05D007777 1.9e-45 186.0 131 62.6
Nn1g06589 Nelumbo nucifera HOM05D006296 ORTHO05D007777 1.9e-45 186.0 91 83.5
BcaNung00841 Brassica carinata HOM05D006296 ORTHO05D007777 3.2e-45 185.3 146 57.5
Peaxi162Scf00530g00219 Petunia axillaris HOM05D006296 ORTHO05D007777 3.2e-45 185.3 182 50.5
Sp7g19880 Schrenkiella parvula HOM05D006296 ORTHO05D007777 3.2e-45 185.3 133 60.9
AT4G21720 Arabidopsis thaliana HOM05D006296 ORTHO05D007777 4.2e-45 184.9 146 57.5
PGR004G1731 Punica granatum HOM05D006296 ORTHO05D007777 5.4e-45 184.5 137 65.0
VMungo0540G1954 Vigna mungo HOM05D006296 ORTHO05D007777 7.1e-45 184.1 153 58.2
AL7G32220 Arabidopsis lyrata HOM05D006296 ORTHO05D007777 9.3e-45 183.7 146 57.5
BcaNung00839 Brassica carinata HOM05D006296 ORTHO05D007777 1.2e-44 183.3 146 56.8
BcaC06g30674 Brassica carinata HOM05D006296 ORTHO05D007777 1.6e-44 183.0 143 58.0
A03p52890 Brassica napus HOM05D006296 ORTHO05D007777 2.7e-44 182.2 143 57.3
BraA03t14365Z Brassica rapa HOM05D006296 ORTHO05D007777 2.7e-44 182.2 143 57.3
Thhalv10026538m.g Eutrema salsugineum HOM05D006296 ORTHO05D007777 3.5e-44 181.8 102 72.5
Aa31LG6G3700 Aethionema arabicum HOM05D006296 ORTHO05D007777 2.3e-43 179.1 157 56.7
Sopen02g023280 Solanum pennellii HOM05D006296 ORTHO05D007777 2.3e-43 179.1 116 62.9
Nitab4.5_0002158g0020 Nicotiana tabacum HOM05D006296 ORTHO05D007777 3.9e-43 178.3 117 65.0
Rhsim13G0176800 Rhododendron simsii HOM05D006296 ORTHO05D007777 3.9e-43 178.3 152 57.2
BcaNung02241 Brassica carinata HOM05D006296 ORTHO05D007777 5.1e-43 177.9 132 58.3
CARHR228450 Cardamine hirsuta HOM05D006296 ORTHO05D007777 8.7e-43 177.2 129 58.1
DCAR_018474 Daucus carota HOM05D006296 ORTHO05D007777 8.7e-43 177.2 112 69.6
FvH4_5g20990 Fragaria vesca HOM05D006296 ORTHO05D007777 1.1e-42 176.8 101 82.2
Solyc02g078430.3 Solanum lycopersicum HOM05D006296 ORTHO05D007777 1.9e-42 176.0 116 62.1
Os04g0680300 Oryza sativa ssp. japonica HOM05D006296 ORTHO05D007777 3.3e-42 175.3 141 57.4
PSO541G0808 Papaver somniferum HOM05D006296 ORTHO05D007777 4.3e-42 174.9 179 50.8
Sed0007841 Sechium edule HOM05D006296 ORTHO05D007777 3.7e-41 171.8 123 66.7
Carub.0007s1968 Capsella rubella HOM05D006296 ORTHO05D007777 1.1e-40 170.2 139 55.4
Phvul.002G228000 Phaseolus vulgaris HOM05D006296 ORTHO05D007777 1.8e-40 169.5 140 60.7
CAN.G1164.13 Capsicum annuum HOM05D006296 ORTHO05D007777 4.0e-40 168.3 108 63.9
Zm00001eb065930 Zea mays HOM05D006296 ORTHO05D007777 7.6e-39 164.1 135 56.3
unitig_22.g6746 Utricularia gibba HOM05D006296 ORTHO05D007777 1.3e-38 163.3 136 52.2
Lj2A287T56 Lonicera japonica HOM05D006296 ORTHO05D007777 4.9e-38 161.4 116 69.8
Migut.H01493 Erythranthe guttata HOM05D006296 ORTHO05D007777 1.4e-37 159.8 119 54.6
Ciclev10017521m.g Citrus clementina HOM05D006296 ORTHO05D007777 3.2e-37 158.7 78 84.6
Nitab4.5_0005954g0020 Nicotiana tabacum HOM05D006296 ORTHO05D007777 2.7e-36 155.6 117 59.8
arahy.Tifrunner.gnm1.ann1.F25ZWM Arachis hypogaea HOM05D006296 ORTHO05D007777 2.3e-35 152.5 78 78.2
ATR0680G190 Amborella trichopoda HOM05D006296 ORTHO05D007777 3.0e-35 152.1 110 64.5
Oeu005074.1 Olea europaea HOM05D006296 ORTHO05D007777 5.1e-35 151.4 124 60.5
Peaxi162Scf00736g00313 Petunia axillaris HOM05D006296 ORTHO05D007777 5.1e-35 151.4 118 58.5
Actinidia25618 Actinidia chinensis HOM05D006296 ORTHO05D007777 1.3e-33 146.7 90 73.3
GSVIVG01002932001 Vitis vinifera HOM05D006296 ORTHO05D007777 6.2e-33 144.4 90 72.2
Sabra11G0035100 Salix brachista HOM05D006296 ORTHO05D007777 8.2e-33 144.1 149 50.3
ClCG00G005210 Citrullus lanatus HOM05D006296 ORTHO05D007777 2.1e-28 129.4 95 69.5
ClCG01G022900 Citrullus lanatus HOM05D006296 ORTHO05D007777 2.1e-28 129.4 95 69.5
Actinidia07582 Actinidia chinensis HOM05D006296 ORTHO05D007777 2.7e-28 129.0 99 64.6
AUR62014802 Chenopodium quinoa HOM05D006296 ORTHO05D007777 1.9e-26 122.9 93 64.5
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 9.7e-26 120.6 90 66.7
AUR62016993 Chenopodium quinoa HOM05D006296 ORTHO05D007777 3.7e-25 118.6 93 63.4
Sabra04G0025800 Salix brachista HOM05D006296 ORTHO05D007777 4.1e-24 115.2 98 59.2
Sed0020533 Sechium edule HOM05D006296 ORTHO05D007777 9.0e-24 114.0 95 60.0
AagrBONN_evm.TU.Sc2ySwM_362.1174 Anthoceros agrestis HOM05D006296 ORTHO05D007777 1.3e-22 110.2 93 49.5
CDE04G3708 Ceratophyllum demersum HOM05D006296 ORTHO05D007777 2.7e-20 102.4 96 55.2
PGSC0003DMG400022442 Solanum tuberosum HOM05D006296 ORTHO05D007777 2.4e-16 89.4 74 54.1
Haze_06487 Corylus avellana HOM05D006296 ORTHO05D007777 2.6e-10 69.3 38 78.9
Cpa.g.sc27.57 Carica papaya HOM05D006296 ORTHO05D007777 6.3e-09 64.7 62 53.2
PGSC0003DMG400022813 Solanum tuberosum HOM05D006296 ORTHO05D007777 3.4e-07 58.9 68 48.5
CSS0025334 Camellia sinensis var. sinensis HOM05D006296 ORTHO05D007777 8.5e-06 54.3 67 46.3


User provided reference genes

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