Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 1.6e-191 672.5 339 100.0
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 1.0e-180 636.7 339 93.8
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 5.7e-168 594.3 338 86.1
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 2.0e-152 542.7 337 79.2
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.3e-150 534.6 338 78.4
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 1.2e-149 533.5 338 78.1
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 3.5e-149 531.9 338 77.8
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 3.5e-149 531.9 338 78.1
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 4.5e-149 531.6 338 78.1
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.5e-147 526.6 326 79.1
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 1.9e-139 499.6 335 70.1
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 3.3e-139 498.8 335 72.8
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 8.0e-138 494.2 333 72.4
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 8.3e-135 484.2 341 71.6
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 3.1e-134 482.3 336 70.2
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 7.0e-134 481.1 336 70.5
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 1.2e-133 480.3 339 71.1
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 5.9e-133 478.0 336 68.2
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 5.9e-133 478.0 336 68.2
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 5.9e-133 478.0 334 70.1
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 7.8e-133 477.6 340 68.8
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 1.3e-132 476.9 335 69.9
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 3.8e-132 475.3 339 70.2
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 3.8e-132 475.3 334 69.2
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 5.0e-132 474.9 337 68.8
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 1.1e-131 473.8 336 68.5
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 2.5e-131 472.6 335 69.3
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 5.6e-131 471.5 341 70.1
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 7.3e-131 471.1 336 70.2
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 1.6e-130 469.9 340 67.6
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 1.6e-130 469.9 330 70.6
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 2.1e-130 469.5 332 69.9
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 2.8e-130 469.2 333 69.7
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 1.0e-129 467.2 337 68.0
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 1.8e-129 466.5 337 68.0
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 2.3e-129 466.1 339 67.6
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 2.0e-128 463.0 333 67.6
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 3.4e-128 462.2 338 68.3
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 5.8e-128 461.5 331 67.4
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 7.5e-128 461.1 336 67.0
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 1.3e-127 460.3 336 66.7
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 1.3e-127 460.3 319 70.5
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 1.7e-127 459.9 336 66.1
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 2.2e-127 459.5 331 67.7
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 3.7e-127 458.8 331 67.1
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 3.7e-127 458.8 336 66.7
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 3.7e-127 458.8 336 65.8
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 1.4e-126 456.8 345 66.4
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 1.4e-126 456.8 331 66.8
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 1.4e-126 456.8 334 68.9
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 1.9e-126 456.4 331 66.8
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 5.4e-126 454.9 325 68.0
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 2.7e-125 452.6 344 64.5
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 6.0e-125 451.4 331 66.5
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 3.9e-124 448.7 331 65.9
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 3.9e-124 448.7 334 68.0
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 1.1e-123 447.2 341 64.8
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 1.1e-123 447.2 329 66.3
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 3.3e-123 445.7 336 65.2
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 3.3e-123 445.7 337 65.3
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 1.2e-122 443.7 323 68.4
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 1.2e-122 443.7 319 69.0
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 6.2e-122 441.4 360 61.4
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 1.8e-121 439.9 337 64.7
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 3.1e-121 439.1 332 66.6
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 3.1e-121 439.1 329 66.9
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 4.0e-121 438.7 328 65.9
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 4.0e-121 438.7 328 65.5
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 5.2e-121 438.3 336 64.3
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 6.8e-121 438.0 336 63.7
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 1.2e-120 437.2 319 68.3
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 3.4e-120 435.6 328 64.9
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 5.8e-120 434.9 329 66.9
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 5.8e-120 434.9 340 65.6
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 3.7e-119 432.2 328 65.9
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 3.7e-119 432.2 329 65.0
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 8.3e-119 431.0 329 66.6
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 1.9e-118 429.9 337 63.8
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 3.2e-118 429.1 336 63.7
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 9.2e-118 427.6 336 64.0
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 1.2e-117 427.2 337 62.6
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 2.1e-117 426.4 326 62.3
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 7.8e-117 424.5 320 66.6
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 1.3e-116 423.7 336 62.8
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 6.6e-116 421.4 339 62.5
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 1.9e-115 419.9 340 62.6
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 1.6e-114 416.8 339 62.2
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 3.6e-114 415.6 329 65.7
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 1.1e-113 414.1 333 61.9
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 1.8e-113 413.3 321 63.6
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 2.3e-113 412.9 330 65.5
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 5.8e-112 408.3 335 60.9
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 1.7e-111 406.8 331 61.0
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 3.7e-111 405.6 337 59.9
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 8.3e-111 404.4 338 62.4
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 2.4e-110 402.9 338 62.4
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 1.2e-109 400.6 339 60.5
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 3.5e-109 399.1 330 63.3
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 7.8e-109 397.9 341 58.9
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 1.0e-108 397.5 319 62.7
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 6.8e-105 384.8 336 57.7
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 2.6e-104 382.9 330 57.0
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 2.6e-104 382.9 330 57.0
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 2.2e-103 379.8 319 58.9
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 8.7e-100 367.9 261 66.3
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 8.7e-100 367.9 318 57.5
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 7.3e-99 364.8 323 56.3
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 7.3e-99 364.8 286 61.9
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 4.7e-98 362.1 338 56.2
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 2.7e-85 319.7 252 62.3
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 4.8e-82 308.9 331 51.7
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 1.7e-79 300.4 322 45.0
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 2.1e-77 293.5 343 42.0
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 1.1e-67 261.2 341 39.6
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 1.7e-63 247.3 181 66.9
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 6.5e-63 245.4 181 66.3
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 2.5e-62 243.4 226 54.9
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 1.7e-58 230.7 172 64.0
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 2.8e-58 229.9 252 51.2
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 4.2e-54 216.1 319 38.6
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 7.9e-53 211.8 149 66.4
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 7.0e-49 198.7 161 62.7
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 2.6e-48 196.8 135 72.6
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 2.4e-41 173.7 143 60.8
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 2.0e-40 170.6 290 33.8
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 1.5e-38 164.5 110 70.9
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 7.2e-38 162.2 126 68.3
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 2.7e-37 160.2 108 70.4
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 3.0e-36 156.8 100 76.0
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 9.7e-35 151.8 116 66.4
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 2.2e-34 150.6 124 58.1
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 6.3e-34 149.1 199 40.2
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 6.3e-34 149.1 152 55.3
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 1.1e-33 148.3 126 61.1
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 9.1e-33 145.2 99 71.7
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 1.7e-31 141.0 100 64.0
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 1.5e-30 137.9 284 30.6
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 1.9e-30 137.5 340 27.4
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 2.6e-27 127.1 171 39.2
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 1.3e-26 124.8 293 33.1
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 7.0e-25 119.0 84 70.2
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 7.0e-25 119.0 84 70.2
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 9.1e-25 118.6 139 50.4
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 2.0e-24 117.5 176 38.1
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 2.3e-23 114.0 132 48.5
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 5.0e-23 112.8 121 54.5
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 1.6e-21 107.8 152 33.6
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 2.6e-19 100.5 113 47.8
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 2.8e-18 97.1 97 52.6
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 3.3e-14 83.6 78 59.0
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 2.3e-12 77.4 56 66.1
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 5.8e-11 72.8 128 42.2
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.3e-10 71.6 59 57.6
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 1.7e-07 61.2 127 42.5
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 8.6e-07 58.9 37 78.4
BcaC08g46242 Brassica carinata HOM05D004841 ORTHO05D005874 1.5e-06 58.2 40 62.5


User provided reference genes

Program Settings