Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 1.6e-71 272.7 141 100.0
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 1.1e-61 240.0 141 88.7
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 4.3e-61 238.0 141 87.9
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 4.3e-61 238.0 141 87.9
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 4.8e-60 234.6 141 87.2
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 4.8e-60 234.6 141 87.2
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 4.8e-60 234.6 141 86.5
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 2.2e-57 225.7 141 83.7
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 8.4e-57 223.8 139 82.0
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 1.1e-56 223.4 141 82.3
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.1e-56 223.4 141 83.0
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 1.4e-56 223.0 141 82.3
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 1.4e-56 223.0 141 83.7
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 7.1e-56 220.7 141 81.6
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 2.7e-55 218.8 139 79.9
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 3.5e-55 218.4 139 82.7
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 3.0e-54 215.3 140 82.1
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.9e-54 214.9 139 77.7
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 5.1e-54 214.5 141 78.7
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 8.7e-54 213.8 141 76.6
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 1.5e-53 213.0 142 81.0
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 1.9e-53 212.6 141 78.7
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 2.5e-53 212.2 141 78.0
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 3.3e-53 211.8 141 77.3
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 5.6e-53 211.1 141 77.3
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 5.6e-53 211.1 142 78.9
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 5.6e-53 211.1 141 76.6
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 7.4e-53 210.7 141 79.4
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 9.6e-53 210.3 142 76.8
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.3e-52 209.9 141 78.0
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.6e-52 209.5 142 78.2
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 2.1e-52 209.1 143 77.6
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 78.0
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 78.0
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 76.6
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 76.6
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.8e-52 208.8 139 77.7
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 2.8e-52 208.8 139 77.7
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 3.6e-52 208.4 141 76.6
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 6.2e-52 207.6 141 78.0
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 6.2e-52 207.6 141 78.0
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 8.1e-52 207.2 141 75.2
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 8.1e-52 207.2 141 75.2
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 8.1e-52 207.2 141 76.6
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 8.1e-52 207.2 141 77.3
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 1.1e-51 206.8 141 78.0
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.1e-51 206.8 142 76.8
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 1.4e-51 206.5 142 78.2
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 1.4e-51 206.5 136 80.1
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.4e-51 206.5 139 76.3
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 1.8e-51 206.1 141 78.7
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 2.4e-51 205.7 141 74.5
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 3.1e-51 205.3 141 74.5
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 3.1e-51 205.3 141 74.5
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 4.0e-51 204.9 142 74.6
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 5.3e-51 204.5 141 77.3
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 5.3e-51 204.5 141 74.5
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 5.3e-51 204.5 141 73.8
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 5.3e-51 204.5 141 73.8
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 5.3e-51 204.5 141 73.8
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 9.0e-51 203.8 142 76.8
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 9.0e-51 203.8 133 78.2
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 9.0e-51 203.8 141 78.0
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 1.5e-50 203.0 142 74.6
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 1.5e-50 203.0 142 74.6
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.5e-50 203.0 141 75.9
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.5e-50 203.0 142 75.4
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 2.0e-50 202.6 142 75.4
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 2.0e-50 202.6 141 75.9
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 2.0e-50 202.6 142 76.8
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 2.0e-50 202.6 142 73.9
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 2.0e-50 202.6 141 74.5
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 2.0e-50 202.6 138 77.5
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 2.6e-50 202.2 142 74.6
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 74.5
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 74.5
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 74.5
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 74.5
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 74.5
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 3.4e-50 201.8 142 74.6
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 3.4e-50 201.8 142 74.6
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 3.4e-50 201.8 141 73.0
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 4.5e-50 201.4 142 73.9
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 4.5e-50 201.4 142 73.9
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 4.5e-50 201.4 142 74.6
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 4.5e-50 201.4 142 76.1
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 4.5e-50 201.4 141 77.3
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 5.8e-50 201.1 141 76.6
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.3e-49 199.9 133 79.7
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 1.7e-49 199.5 142 74.6
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 2.9e-49 198.7 138 74.6
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 2.9e-49 198.7 141 75.2
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 1.1e-48 196.8 141 75.9
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.1e-48 196.8 143 74.8
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 1.9e-48 196.1 139 75.5
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.9e-48 196.1 141 73.8
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 3.2e-48 195.3 141 73.8
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 7.1e-48 194.1 141 71.6
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 7.1e-48 194.1 141 75.2
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 9.3e-48 193.7 139 75.5
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 1.6e-47 193.0 144 72.2
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.6e-47 193.0 142 73.2
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.6e-47 193.0 142 73.2
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.1e-47 192.6 141 73.8
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 2.1e-47 192.6 142 75.4
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 3.5e-47 191.8 133 73.7
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 4.6e-47 191.4 141 73.0
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 4.6e-47 191.4 143 71.3
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 4.6e-47 191.4 143 71.3
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 6.0e-47 191.0 141 70.9
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 1.0e-46 190.3 143 72.7
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.3e-46 189.9 141 72.3
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 1.3e-46 189.9 141 73.0
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 1.3e-46 189.9 140 72.9
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 6.7e-46 187.6 144 71.5
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 6.7e-46 187.6 139 67.6
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 8.7e-46 187.2 141 71.6
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.1e-45 186.8 140 72.1
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.5e-45 186.4 143 72.7
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 1.9e-45 186.0 142 71.1
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 3.3e-45 185.3 141 72.3
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 4.3e-45 184.9 142 70.4
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.3e-44 183.3 157 68.2
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 1.3e-44 183.3 142 70.4
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 2.1e-44 182.6 143 71.3
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.8e-44 182.2 144 68.1
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 8.1e-44 180.6 141 68.8
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 3.1e-43 178.7 142 69.0
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.0e-41 173.7 139 67.6
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.0e-41 173.7 111 76.6
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 2.2e-41 172.6 142 69.0
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 2.2e-41 172.6 141 66.7
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 1.4e-40 169.9 140 65.0
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 3.2e-40 168.7 140 63.6
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 3.5e-39 165.2 134 64.9
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 7.9e-39 164.1 142 62.7
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 3.9e-38 161.8 155 65.2
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 6.7e-38 161.0 141 64.5
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 2.5e-37 159.1 117 71.8
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 9.6e-37 157.1 159 59.7
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.8e-35 152.9 141 63.1
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 9.0e-35 150.6 99 77.8
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.7e-33 146.4 126 63.5
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.7e-33 146.4 140 57.1
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 7.2e-32 141.0 88 77.3
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 7.2e-32 141.0 116 61.2
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 9.3e-32 140.6 134 56.7
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 3.6e-31 138.7 113 66.4
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 4.6e-31 138.3 138 57.2
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 5.1e-30 134.8 120 61.7
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 5.7e-29 131.3 119 63.9
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 5.7e-29 131.3 143 55.9
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 7.4e-29 131.0 91 80.2
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.3e-28 130.2 128 56.2
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 2.4e-27 125.9 140 55.0
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 5.3e-27 124.8 145 49.7
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 1.6e-23 113.2 91 70.3
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 1.0e-22 110.5 91 67.0
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 1.3e-20 103.6 81 71.6
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 2.2e-20 102.8 141 46.1
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 2.8e-20 102.4 66 71.2
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 1.1e-19 100.5 132 43.2
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 1.8e-19 99.8 53 84.9
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.0e-17 94.0 72 73.6
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 1.4e-14 83.6 80 53.8
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 5.5e-08 61.6 133 38.3


User provided reference genes

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