Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 1.8e-192 676.0 404 100.0
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 4.7e-161 571.6 404 88.4
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 1.6e-137 493.4 412 76.7
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 9.3e-125 451.1 423 66.2
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 5.8e-119 431.8 415 69.9
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 2.9e-118 429.5 402 71.1
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 6.7e-115 418.3 406 66.5
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.2e-111 407.5 415 67.7
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 6.7e-91 338.6 416 60.6
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 1.2e-87 327.8 421 59.6
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 2.0e-87 327.0 409 57.9
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 7.7e-87 325.1 409 54.5
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 1.3e-86 324.3 397 51.1
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 2.5e-85 320.1 405 49.1
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 9.4e-85 318.2 411 56.0
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 1.6e-84 317.4 419 49.2
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 1.5e-82 310.8 399 52.1
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 5.7e-82 308.9 398 52.3
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 9.1e-80 301.6 409 49.4
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 1.1e-77 294.7 410 46.1
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 1.4e-77 294.3 405 50.1
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.9e-77 293.9 399 47.6
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.5e-77 293.5 404 47.8
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 3.2e-77 293.1 402 47.5
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 5.5e-77 292.4 401 48.1
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 7.2e-77 292.0 404 48.3
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 3.6e-76 289.7 409 52.6
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 3.9e-75 286.2 403 49.1
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 5.2e-75 285.8 430 48.1
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 6.7e-75 285.4 400 47.8
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 1.5e-74 284.3 399 48.1
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 7.4e-74 282.0 412 43.7
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 1.7e-73 280.8 397 45.1
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 4.8e-73 279.3 408 48.5
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 7.0e-72 275.4 407 44.5
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 7.0e-72 275.4 402 45.5
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 2.0e-71 273.9 399 43.6
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 7.7e-71 271.9 421 47.3
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 7.7e-71 271.9 400 45.0
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 1.3e-70 271.2 398 48.5
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 5.5e-69 265.8 403 47.9
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 2.7e-68 263.5 411 47.2
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 1.0e-67 261.5 402 49.8
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 2.3e-67 260.4 407 49.6
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 3.0e-67 260.0 395 42.8
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 8.8e-67 258.5 406 42.6
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 8.8e-67 258.5 413 47.9
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 8.8e-67 258.5 431 46.6
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 5.7e-66 255.8 395 42.8
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 5.7e-66 255.8 405 41.2
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 9.7e-66 255.0 408 42.6
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.3e-65 254.6 404 44.1
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 2.2e-65 253.8 409 46.7
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 8.2e-65 251.9 412 44.9
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.4e-64 251.1 404 43.8
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 2.4e-64 250.4 404 42.1
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 4.1e-64 249.6 407 46.9
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 9.1e-64 248.4 403 43.7
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 9.1e-64 248.4 402 41.5
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 9.1e-64 248.4 399 41.9
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 9.1e-64 248.4 396 49.5
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 2.0e-63 247.3 388 43.0
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 4.5e-63 246.1 399 44.1
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 5.9e-63 245.7 406 42.1
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 7.7e-63 245.4 412 42.5
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 7.7e-63 245.4 410 42.4
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 1.7e-62 244.2 409 48.2
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 2.2e-62 243.8 405 48.4
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 2.9e-62 243.4 412 44.4
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 1.1e-61 241.5 403 42.4
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 3.2e-61 240.0 434 45.4
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 6.1e-60 235.7 396 46.5
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 8.0e-60 235.3 397 44.3
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 1.4e-59 234.6 405 42.0
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 1.2e-58 231.5 396 42.4
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.2e-58 231.5 397 43.1
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 1.3e-57 228.0 353 43.1
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.8e-56 224.2 347 41.5
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 1.8e-56 224.2 351 41.3
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 3.1e-56 223.4 385 43.9
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 9.1e-56 221.9 410 40.2
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 2.0e-55 220.7 385 43.4
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 2.7e-55 220.3 408 43.1
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 1.0e-54 218.4 293 45.7
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 1.1e-53 214.9 412 40.8
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 2.5e-53 213.8 404 40.1
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 3.3e-53 213.4 419 44.9
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 3.3e-53 213.4 418 43.1
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 4.2e-53 213.0 403 46.2
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 8.0e-52 208.8 389 43.7
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.8e-51 207.6 420 41.7
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 3.0e-51 206.8 416 42.3
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 5.7e-50 202.6 411 44.3
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 1.4e-48 198.0 444 38.5
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 5.4e-48 196.1 412 38.6
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 5.4e-48 196.1 426 42.0
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 9.2e-48 195.3 348 39.9
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 9.2e-48 195.3 426 43.7
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 9.2e-48 195.3 407 42.8
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 9.2e-48 195.3 403 43.4
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 1.6e-47 194.5 420 41.0
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 1.6e-47 194.5 384 38.0
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 2.0e-47 194.1 404 42.8
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 2.0e-47 194.1 404 42.8
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 5.9e-47 192.6 408 38.7
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 1.0e-46 191.8 407 41.3
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 2.9e-46 190.3 399 40.6
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 2.9e-46 190.3 399 40.6
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.1e-45 188.3 206 53.4
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 1.5e-45 188.0 406 39.9
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 1.5e-45 188.0 406 39.9
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 1.5e-45 188.0 406 39.9
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 4.7e-44 183.0 408 41.9
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 1.4e-43 181.4 173 57.8
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 5.2e-43 179.5 423 41.6
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 1.5e-42 177.9 413 41.4
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 2.0e-42 177.6 392 39.8
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 2.6e-42 177.2 410 38.3
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 2.6e-42 177.2 410 38.3
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 9.8e-42 175.3 410 33.9
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 4.6e-39 166.4 356 42.7
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 6.0e-39 166.0 198 51.0
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 1.3e-38 164.9 404 36.6
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 3.0e-38 163.7 288 45.1
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 8.6e-38 162.2 416 41.8
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.9e-37 161.0 427 32.6
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 4.3e-37 159.8 411 34.8
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 1.6e-36 157.9 407 35.4
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 2.8e-36 157.1 389 35.5
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 4.7e-36 156.4 415 35.7
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 1.2e-34 151.8 360 33.3
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 2.6e-34 150.6 399 37.1
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 2.6e-34 150.6 275 40.7
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 3.7e-33 146.7 415 39.0
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 3.6e-28 130.2 271 38.4
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.8e-27 127.9 216 39.4
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 1.3e-25 121.7 398 31.2
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.3e-22 111.7 208 44.7
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 1.2e-20 105.1 188 41.5
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 6.2e-12 76.3 80 50.0
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 8.1e-12 75.9 355 27.3
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 1.3e-09 68.6 157 41.4
Actinidia37514 Actinidia chinensis HOM05D000378 ORTHO05D006084 3.9e-06 57.0 46 63.0
Pp3c23_18800 Physcomitrium patens HOM05D028458 ORTHO05D050317 3.9e-06 57.0 63 52.4
Actinidia25795 Actinidia chinensis HOM05D005109 ORTHO05D006084 5.1e-06 56.6 171 29.2


User provided reference genes

Program Settings