Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 3.6e-109 398.3 204 100.0
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 2.6e-99 365.5 196 96.4
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 4.4e-99 364.8 192 98.4
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 1.1e-89 333.6 180 95.6
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 9.3e-73 277.3 199 76.9
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 9.0e-68 260.8 196 69.9
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 2.6e-59 232.6 195 64.1
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 2.7e-56 222.6 194 62.4
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 6.0e-56 221.5 194 62.4
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 4.3e-54 215.3 196 59.2
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 4.8e-53 211.8 193 59.6
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 1.4e-52 210.3 195 60.0
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 1.5e-51 206.8 197 58.4
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 3.4e-51 205.7 193 59.1
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 4.5e-51 205.3 114 98.2
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 5.8e-51 204.9 198 56.6
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 8.4e-50 201.1 198 52.5
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 8.4e-50 201.1 198 52.5
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 1.4e-49 200.3 193 56.0
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 3.2e-49 199.1 193 54.9
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 7.1e-49 198.0 198 54.5
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 6.0e-48 194.9 110 97.3
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 6.0e-48 194.9 199 53.8
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 3.0e-47 192.6 193 53.4
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 3.0e-47 192.6 203 51.2
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 4.3e-46 188.7 193 51.3
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 7.4e-46 188.0 193 51.8
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 1.6e-45 186.8 193 52.8
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 4.8e-45 185.3 196 53.1
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 6.3e-45 184.9 193 52.8
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 1.8e-44 183.3 196 54.1
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 2.4e-44 183.0 198 51.0
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 3.1e-44 182.6 195 54.9
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 9.0e-44 181.0 196 53.6
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 1.2e-43 180.6 195 51.8
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 1.2e-43 180.6 191 51.8
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 3.4e-43 179.1 196 53.6
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 4.5e-43 178.7 193 51.8
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 5.9e-43 178.3 193 52.3
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 5.9e-43 178.3 199 50.8
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 1.3e-42 177.2 193 49.7
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 1.3e-42 177.2 201 50.2
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 2.9e-42 176.0 195 49.7
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 3.8e-42 175.6 196 52.0
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 3.8e-42 175.6 196 52.0
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 3.8e-42 175.6 195 49.2
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 6.5e-42 174.9 193 49.7
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 8.5e-42 174.5 193 48.2
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 1.1e-41 174.1 196 51.5
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 1.1e-41 174.1 198 50.0
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 2.5e-41 172.9 193 47.7
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 2.5e-41 172.9 198 50.0
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 2.5e-41 172.9 196 51.5
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 2.5e-41 172.9 195 50.3
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 7.2e-41 171.4 193 46.6
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 7.2e-41 171.4 193 47.2
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 7.2e-41 171.4 195 49.7
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 9.3e-41 171.0 196 49.5
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 1.6e-40 170.2 196 52.0
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 1.6e-40 170.2 193 46.1
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 2.1e-40 169.9 195 49.2
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 1.0e-39 167.5 193 47.7
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 1.3e-39 167.2 196 48.0
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 1.3e-39 167.2 194 50.5
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 1.8e-39 166.8 196 46.4
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 2.3e-39 166.4 199 44.7
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 2.3e-39 166.4 193 46.6
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 5.1e-39 165.2 194 47.4
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 1.1e-38 164.1 196 49.5
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 3.3e-38 162.5 193 45.1
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 8.2e-37 157.9 197 47.2
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 1.4e-36 157.1 198 50.0
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 1.4e-36 157.1 198 50.0
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 6.9e-36 154.8 193 45.6
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 1.5e-35 153.7 197 45.2
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 3.4e-35 152.5 193 47.7
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 2.5e-33 146.4 187 46.5
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 4.2e-33 145.6 193 40.9
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 4.2e-33 145.6 198 47.0
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 4.2e-33 145.6 193 41.5
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.1e-32 143.3 195 42.1
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 1.4e-31 140.6 194 42.3
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 5.1e-31 138.7 193 40.4
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 6.7e-31 138.3 193 40.4
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.1e-30 137.5 236 37.7
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 6.3e-29 131.7 194 40.2
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 8.2e-29 131.3 196 41.3
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 4.1e-28 129.0 194 40.2
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 1.5e-27 127.1 193 39.4
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 2.0e-27 126.7 194 39.7
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 2.6e-27 126.3 194 39.2
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 2.6e-27 126.3 194 39.2
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 2.6e-27 126.3 193 37.3
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 3.4e-27 125.9 196 39.8
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 3.4e-27 125.9 196 39.8
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.4e-27 125.9 193 37.8
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 4.5e-27 125.6 196 39.8
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 5.9e-27 125.2 193 37.3
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 7.7e-27 124.8 194 39.2
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 7.7e-27 124.8 198 41.4
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 1.0e-26 124.4 194 38.7
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 1.3e-26 124.0 199 41.7
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 2.2e-26 123.2 194 39.2
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.2e-26 123.2 193 37.8
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 1.1e-25 120.9 194 39.2
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 9.4e-25 117.9 194 39.7
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 1.2e-24 117.5 194 39.2
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 1.2e-24 117.5 194 39.2
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 1.2e-24 117.5 196 39.3
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.8e-23 113.6 213 35.7
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 1.5e-22 110.5 193 35.8
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 2.6e-22 109.8 128 49.2
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 4.5e-19 99.0 185 33.0
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 4.5e-19 99.0 87 55.2
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 1.1e-17 94.4 119 45.4
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 1.0e-15 87.8 99 47.5
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 4.1e-12 75.9 195 30.3
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 4.0e-07 59.3 94 35.1


User provided reference genes

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